Wall clock time and date at job start Tue Mar 31 2020 13:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.47099 * 2 1 4 4 C 1.38237 * 119.99727 * 90.00016 * 3 2 1 5 5 C 1.38242 * 119.99556 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00124 * 0.02562 * 5 4 3 7 7 S 1.76196 * 119.99859 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.39984 * 336.45348 * 7 6 5 9 9 O 1.42105 * 106.39961 * 203.54103 * 7 6 5 10 10 N 1.65593 * 107.22113 * 90.00020 * 7 6 5 11 11 C 1.46502 * 119.99605 * 269.99694 * 10 7 6 12 12 C 1.50700 * 109.47099 * 264.99737 * 11 10 7 13 13 H 1.07992 * 120.00396 * 0.02562 * 12 11 10 14 14 C 1.37886 * 119.99695 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00026 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99768 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47146 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47043 * 119.99680 * 16 14 12 19 19 H 1.48497 * 109.46888 * 240.00002 * 16 14 12 20 20 C 1.46499 * 120.00395 * 89.99978 * 10 7 6 21 21 C 1.53000 * 109.46840 * 265.00156 * 20 10 7 22 22 C 1.53003 * 117.49371 * 243.61805 * 21 20 10 23 23 C 1.53001 * 117.49608 * 174.99880 * 21 20 10 24 24 C 1.38233 * 120.00111 * 0.25270 * 6 5 4 25 25 C 1.38231 * 120.00000 * 270.02278 * 3 2 1 26 26 H 1.09002 * 109.46697 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47282 * 59.99523 * 1 2 3 28 28 H 1.08996 * 109.47508 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46697 * 240.00026 * 2 1 3 30 30 H 1.08996 * 109.47041 * 119.99895 * 2 1 3 31 31 H 1.08003 * 120.00327 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.99502 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47474 * 25.00485 * 11 10 7 34 34 H 1.09003 * 109.46943 * 145.00256 * 11 10 7 35 35 H 0.97000 * 119.99891 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47391 * 144.99826 * 20 10 7 37 37 H 1.09001 * 109.46813 * 24.99883 * 20 10 7 38 38 H 1.08995 * 115.55630 * 29.32490 * 21 20 10 39 39 H 1.08998 * 117.50656 * 0.02562 * 22 21 20 40 40 H 1.09001 * 117.49674 * 145.02590 * 22 21 20 41 41 H 1.09003 * 117.49710 * 214.97494 * 23 21 20 42 42 H 1.08998 * 117.50185 * 359.97438 * 23 21 20 43 43 H 1.07990 * 120.00334 * 179.72905 * 24 6 5 44 44 H 1.08007 * 119.99797 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3756 1.1972 6 6 2.9545 4.0272 0.0000 7 16 3.5418 5.6884 0.0000 8 8 3.1621 6.2482 1.2497 9 8 3.1622 6.2482 -1.2497 10 7 5.1964 5.6234 0.0000 11 6 5.9283 5.5947 1.2688 12 6 6.3420 6.9950 1.6419 13 1 6.0852 7.8235 0.9985 14 6 7.0486 7.2183 2.8047 15 7 7.3609 6.2095 3.5884 16 14 7.5608 8.9541 3.2675 17 1 7.0903 9.9032 2.2267 18 1 6.9589 9.3155 4.5761 19 1 9.0408 9.0234 3.3672 20 6 5.9284 5.5947 -1.2686 21 6 6.2356 4.1445 -1.6474 22 6 7.7065 3.7292 -1.7177 23 6 6.8956 3.8935 -3.0047 24 6 2.7186 3.3776 -1.1971 25 6 2.2623 2.0726 -1.1971 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0824 1.5634 2.1325 32 1 2.9045 3.8845 2.1325 33 1 5.2868 5.1853 2.0491 34 1 6.8152 4.9700 1.1626 35 1 7.8583 6.3666 4.4062 36 1 6.8616 6.1480 -1.1624 37 1 5.3210 6.0532 -2.0490 38 1 5.5197 3.4038 -1.2913 39 1 8.4553 4.4889 -1.4938 40 1 7.9584 2.7150 -1.4077 41 1 6.6141 2.9875 -3.5414 42 1 7.1106 4.7615 -3.6280 43 1 2.8944 3.8881 -2.1324 44 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264103736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:49 Heat of formation + Delta-G solvation = -33.355059 kcal Electronic energy + Delta-G solvation = -25888.629105 eV Core-core repulsion = 22319.415248 eV Total energy + Delta-G solvation = -3569.213858 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.37064 -37.60991 -36.59084 -35.18580 -34.77102 -34.35756 -32.35766 -30.97711 -29.64271 -27.86500 -25.37650 -24.33958 -22.80920 -22.41439 -22.07448 -21.23813 -20.39012 -18.53271 -17.53089 -16.66461 -16.38934 -15.95921 -15.55619 -15.53910 -14.68447 -14.45566 -14.37755 -14.11127 -13.84058 -13.71559 -13.40378 -13.16258 -12.87170 -12.56363 -12.46307 -12.12753 -11.84584 -11.53086 -11.47592 -11.45333 -11.38454 -11.30777 -11.12349 -11.07594 -10.97198 -10.76927 -10.58842 -10.41413 -10.13934 -10.01443 -9.69469 -9.56058 -9.04588 -8.95567 -8.43110 -8.06637 -6.04980 -4.08517 0.81928 1.13296 1.38144 3.32152 3.39737 3.40637 3.45917 3.78015 4.09884 4.36806 4.46876 4.54061 4.61640 4.81561 4.96102 4.99075 5.09060 5.13484 5.19941 5.23711 5.30528 5.30996 5.38716 5.52175 5.61504 5.64372 5.74918 5.79312 5.80968 5.85310 5.94288 6.02069 6.12142 6.16945 6.21903 6.25902 6.35109 6.46566 6.52164 6.61008 6.91856 7.26350 7.40923 7.61264 7.92651 8.21766 8.94118 9.56464 11.03617 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.004423 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.989753 B = 6328.600276 C = 7099.006823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.038 4.038 4 C -0.141 4.141 5 C -0.012 4.012 6 C -0.676 4.676 7 S 2.683 3.317 8 O -0.943 6.943 9 O -0.977 6.977 10 N -0.976 5.976 11 C 0.257 3.743 12 C -0.527 4.527 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.284 1.284 20 C 0.151 3.849 21 C -0.171 4.171 22 C -0.172 4.172 23 C -0.182 4.182 24 C -0.019 4.019 25 C -0.145 4.145 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.142 0.858 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.137 0.863 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.657 -12.655 -10.123 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.038 4.038 4 C -0.160 4.160 5 C -0.031 4.031 6 C -0.760 4.760 7 S 2.772 3.228 8 O -0.933 6.933 9 O -0.967 6.967 10 N -0.815 5.815 11 C 0.135 3.865 12 C -0.566 4.566 13 H 0.080 0.920 14 C -0.139 4.139 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.210 1.210 20 C 0.025 3.975 21 C -0.191 4.191 22 C -0.209 4.209 23 C -0.220 4.220 24 C -0.038 4.038 25 C -0.164 4.164 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.155 0.845 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.083 -11.963 -9.927 17.521 hybrid contribution 0.463 -0.030 0.464 0.656 sum -7.620 -11.993 -9.463 17.072 Atomic orbital electron populations 1.21746 0.94366 1.01828 1.02491 1.20651 0.96441 0.92486 1.03225 1.20163 0.94448 0.95749 0.93430 1.21149 1.01918 0.95178 0.97771 1.21029 0.90979 0.93941 0.97124 1.31465 1.17427 1.28022 0.99114 1.02257 0.73159 0.73971 0.73430 1.93600 1.81738 1.74860 1.43087 1.93490 1.82579 1.75963 1.44681 1.57384 1.22523 1.88270 1.13306 1.19101 0.92311 0.97794 0.77278 1.21526 1.35053 0.93349 1.06698 0.92023 1.24913 0.95793 0.97253 0.95970 1.69930 1.39740 1.30446 1.13315 0.86482 0.77967 0.84597 0.78655 1.19601 1.20826 1.21033 1.20828 0.98820 0.93025 0.84873 1.22951 0.96640 0.99423 1.00045 1.22971 0.94532 1.02521 1.00870 1.22919 1.05375 1.02905 0.90798 1.20888 0.92269 0.93986 0.96668 1.21082 1.02495 0.95178 0.97630 0.92338 0.92425 0.92226 0.90736 0.90621 0.85382 0.83999 0.94464 0.94266 0.92791 0.89185 0.89789 0.88073 0.88369 0.89365 0.89299 0.88743 0.84533 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.90 37.16 0.37 -0.76 16 2 C -0.09 -0.78 6.06 -27.88 -0.17 -0.95 16 3 C -0.04 -0.44 5.13 -104.62 -0.54 -0.98 16 4 C -0.14 -1.86 9.70 -39.58 -0.38 -2.25 16 5 C -0.01 -0.19 9.52 -39.58 -0.38 -0.56 16 6 C -0.68 -11.34 5.97 -39.58 -0.24 -11.57 16 7 S 2.68 54.09 5.65 -107.50 -0.61 53.48 16 8 O -0.94 -22.40 16.25 -57.17 -0.93 -23.33 16 9 O -0.98 -20.12 15.83 -57.17 -0.91 -21.03 16 10 N -0.98 -20.06 2.77 -115.66 -0.32 -20.38 16 11 C 0.26 6.31 5.10 -5.19 -0.03 6.28 16 12 C -0.53 -14.53 9.38 -34.44 -0.32 -14.85 16 13 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.90 -25.77 13.29 55.43 0.74 -25.04 16 16 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.15 2.63 5.96 -4.04 -0.02 2.60 16 21 C -0.17 -2.53 6.01 -90.62 -0.54 -3.08 16 22 C -0.17 -2.36 10.18 -26.73 -0.27 -2.63 16 23 C -0.18 -2.20 10.25 -26.73 -0.27 -2.47 16 24 C -0.02 -0.27 9.10 -39.58 -0.36 -0.63 16 25 C -0.15 -1.76 9.70 -39.58 -0.38 -2.14 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.14 2.33 7.62 -52.49 -0.40 1.93 16 33 H 0.04 0.97 7.61 -51.93 -0.40 0.57 16 34 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.09 1.60 7.84 -51.93 -0.41 1.19 16 37 H 0.08 1.37 6.91 -51.93 -0.36 1.01 16 38 H 0.10 1.52 7.71 -51.93 -0.40 1.12 16 39 H 0.10 1.39 8.03 -51.93 -0.42 0.97 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.14 1.80 7.61 -52.49 -0.40 1.40 16 44 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -32.40 380.78 -11.92 -44.31 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.97 Total: 1.94 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: -3.64 Total: -32.34 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.42 Total: -45.41 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -1.83 Total: -44.36 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -0.61 Total: 53.48 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.40 -11.92 -44.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264103736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.957 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds