Wall clock time and date at job start Tue Mar 31 2020 13:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.47099 * 2 1 4 4 C 1.38237 * 119.99727 * 90.00016 * 3 2 1 5 5 C 1.38242 * 119.99556 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00124 * 0.02562 * 5 4 3 7 7 S 1.76196 * 119.99859 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.39984 * 336.45348 * 7 6 5 9 9 O 1.42105 * 106.39961 * 203.54103 * 7 6 5 10 10 N 1.65593 * 107.22113 * 90.00020 * 7 6 5 11 11 C 1.46502 * 119.99605 * 269.99694 * 10 7 6 12 12 C 1.50700 * 109.47099 * 264.99737 * 11 10 7 13 13 H 1.07992 * 120.00396 * 0.02562 * 12 11 10 14 14 C 1.37886 * 119.99695 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00026 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99768 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47146 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47043 * 119.99680 * 16 14 12 19 19 H 1.48497 * 109.46888 * 240.00002 * 16 14 12 20 20 C 1.46499 * 120.00395 * 89.99978 * 10 7 6 21 21 C 1.53000 * 109.46840 * 265.00156 * 20 10 7 22 22 C 1.53003 * 117.49371 * 243.61805 * 21 20 10 23 23 C 1.53001 * 117.49608 * 174.99880 * 21 20 10 24 24 C 1.38233 * 120.00111 * 0.25270 * 6 5 4 25 25 C 1.38231 * 120.00000 * 270.02278 * 3 2 1 26 26 H 1.09002 * 109.46697 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47282 * 59.99523 * 1 2 3 28 28 H 1.08996 * 109.47508 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46697 * 240.00026 * 2 1 3 30 30 H 1.08996 * 109.47041 * 119.99895 * 2 1 3 31 31 H 1.08003 * 120.00327 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.99502 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47474 * 25.00485 * 11 10 7 34 34 H 1.09003 * 109.46943 * 145.00256 * 11 10 7 35 35 H 0.97000 * 119.99891 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47391 * 144.99826 * 20 10 7 37 37 H 1.09001 * 109.46813 * 24.99883 * 20 10 7 38 38 H 1.08995 * 115.55630 * 29.32490 * 21 20 10 39 39 H 1.08998 * 117.50656 * 0.02562 * 22 21 20 40 40 H 1.09001 * 117.49674 * 145.02590 * 22 21 20 41 41 H 1.09003 * 117.49710 * 214.97494 * 23 21 20 42 42 H 1.08998 * 117.50185 * 359.97438 * 23 21 20 43 43 H 1.07990 * 120.00334 * 179.72905 * 24 6 5 44 44 H 1.08007 * 119.99797 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3756 1.1972 6 6 2.9545 4.0272 0.0000 7 16 3.5418 5.6884 0.0000 8 8 3.1621 6.2482 1.2497 9 8 3.1622 6.2482 -1.2497 10 7 5.1964 5.6234 0.0000 11 6 5.9283 5.5947 1.2688 12 6 6.3420 6.9950 1.6419 13 1 6.0852 7.8235 0.9985 14 6 7.0486 7.2183 2.8047 15 7 7.3609 6.2095 3.5884 16 14 7.5608 8.9541 3.2675 17 1 7.0903 9.9032 2.2267 18 1 6.9589 9.3155 4.5761 19 1 9.0408 9.0234 3.3672 20 6 5.9284 5.5947 -1.2686 21 6 6.2356 4.1445 -1.6474 22 6 7.7065 3.7292 -1.7177 23 6 6.8956 3.8935 -3.0047 24 6 2.7186 3.3776 -1.1971 25 6 2.2623 2.0726 -1.1971 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0824 1.5634 2.1325 32 1 2.9045 3.8845 2.1325 33 1 5.2868 5.1853 2.0491 34 1 6.8152 4.9700 1.1626 35 1 7.8583 6.3666 4.4062 36 1 6.8616 6.1480 -1.1624 37 1 5.3210 6.0532 -2.0490 38 1 5.5197 3.4038 -1.2913 39 1 8.4553 4.4889 -1.4938 40 1 7.9584 2.7150 -1.4077 41 1 6.6141 2.9875 -3.5414 42 1 7.1106 4.7615 -3.6280 43 1 2.8944 3.8881 -2.1324 44 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264103736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:47 Heat of formation + Delta-G solvation = -51.956576 kcal Electronic energy + Delta-G solvation = -25889.435727 eV Core-core repulsion = 22319.415248 eV Total energy + Delta-G solvation = -3570.020480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.41929 -38.88923 -38.27149 -36.88495 -36.39009 -35.21715 -34.38937 -32.06150 -30.56497 -29.70258 -27.06914 -25.21852 -24.33275 -23.86619 -23.13522 -22.18315 -21.61249 -19.99257 -19.08974 -18.40435 -18.22126 -17.49333 -16.74388 -16.57514 -16.26850 -15.94953 -15.60706 -15.31457 -14.83184 -14.70978 -14.63921 -14.42541 -14.30329 -14.12552 -13.75268 -13.55012 -13.18322 -13.13813 -13.02803 -12.96772 -12.73115 -12.56815 -12.43218 -12.37185 -12.33106 -12.27006 -12.03119 -11.76367 -11.75612 -11.57795 -11.21336 -10.74543 -10.58864 -10.12894 -10.04456 -9.77159 -8.19547 -6.30952 -0.57384 -0.18614 0.30088 1.38267 1.40906 1.52505 2.02643 2.41339 2.52248 2.85007 2.99080 3.11599 3.33101 3.72216 3.75299 3.81236 3.93484 4.01895 4.18029 4.24454 4.26644 4.33359 4.46910 4.48212 4.52981 4.59709 4.81465 4.84975 4.90424 4.91681 4.94503 5.06704 5.07370 5.10056 5.11849 5.19413 5.22936 5.33248 5.35220 5.38277 5.49122 5.50892 5.70613 5.87577 5.92159 6.11275 6.77098 7.37484 8.88351 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.004423 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.989753 B = 6328.600276 C = 7099.006823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.027 4.027 4 C -0.143 4.143 5 C -0.037 4.037 6 C -0.684 4.684 7 S 2.687 3.313 8 O -0.992 6.992 9 O -0.987 6.987 10 N -0.983 5.983 11 C 0.276 3.724 12 C -0.547 4.547 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.923 5.923 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.270 1.270 20 C 0.146 3.854 21 C -0.189 4.189 22 C -0.181 4.181 23 C -0.151 4.151 24 C -0.025 4.025 25 C -0.137 4.137 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.014 0.986 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.147 0.853 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.154 -14.984 -12.054 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.027 4.027 4 C -0.162 4.162 5 C -0.057 4.057 6 C -0.774 4.774 7 S 2.781 3.219 8 O -0.983 6.983 9 O -0.978 6.978 10 N -0.820 5.820 11 C 0.153 3.847 12 C -0.586 4.586 13 H 0.071 0.929 14 C -0.185 4.185 15 N -0.563 5.563 16 Si 0.780 3.220 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.195 1.195 20 C 0.021 3.979 21 C -0.209 4.209 22 C -0.218 4.218 23 C -0.189 4.189 24 C -0.045 4.045 25 C -0.156 4.156 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.168 0.832 32 H 0.140 0.860 33 H 0.032 0.968 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.165 0.835 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.552 -14.237 -11.882 20.421 hybrid contribution 0.531 0.557 1.019 1.277 sum -8.021 -13.680 -10.863 19.222 Atomic orbital electron populations 1.21754 0.93577 1.02984 1.02090 1.20758 0.96899 0.90087 1.04829 1.20639 0.92230 0.97294 0.92572 1.21425 1.01097 0.93896 0.99761 1.21032 0.92904 0.95549 0.96186 1.30720 1.20143 1.25767 1.00786 1.01642 0.72755 0.75204 0.72256 1.93529 1.82401 1.77228 1.45124 1.93456 1.82537 1.77337 1.44464 1.57214 1.22722 1.89036 1.13036 1.18591 0.91574 0.96011 0.78544 1.21848 1.35315 0.94445 1.07009 0.92924 1.25710 0.95800 1.01113 0.95910 1.70018 1.40268 1.32282 1.13721 0.85556 0.78274 0.79986 0.78198 1.19406 1.20520 1.19488 1.20986 0.98097 0.95223 0.83597 1.22793 0.97465 0.97442 1.03209 1.23019 0.93515 1.02638 1.02633 1.23048 1.02024 1.04222 0.89562 1.21117 0.92335 0.95160 0.95860 1.21508 1.00632 0.94014 0.99423 0.93176 0.92479 0.90346 0.88684 0.89591 0.83200 0.86011 0.96756 0.95266 0.92416 0.90345 0.88929 0.88133 0.89428 0.88509 0.86791 0.87663 0.83509 0.81816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.90 71.98 0.71 -1.00 16 2 C -0.09 -1.14 6.06 29.85 0.18 -0.96 16 3 C -0.03 -0.55 5.13 -19.87 -0.10 -0.65 16 4 C -0.14 -3.60 9.70 22.27 0.22 -3.38 16 5 C -0.04 -1.23 9.52 22.27 0.21 -1.02 16 6 C -0.68 -23.42 5.97 22.27 0.13 -23.29 16 7 S 2.69 113.91 5.65 -56.49 -0.32 113.59 16 8 O -0.99 -50.60 16.25 -128.00 -2.08 -52.68 16 9 O -0.99 -41.83 15.83 -128.00 -2.03 -43.86 16 10 N -0.98 -42.43 2.77 -519.84 -1.44 -43.87 16 11 C 0.28 14.37 5.10 85.63 0.44 14.81 16 12 C -0.55 -31.49 9.38 25.60 0.24 -31.25 16 13 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 14 C 0.01 0.81 5.46 84.66 0.46 1.27 16 15 N -0.92 -54.61 13.29 21.45 0.28 -54.33 16 16 Si 0.95 45.20 29.54 68.60 2.03 47.23 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 C 0.15 5.22 5.96 86.38 0.51 5.74 16 21 C -0.19 -5.52 6.01 -10.79 -0.06 -5.58 16 22 C -0.18 -4.81 10.18 30.60 0.31 -4.50 16 23 C -0.15 -3.27 10.25 30.60 0.31 -2.96 16 24 C -0.03 -0.69 9.10 22.27 0.20 -0.49 16 25 C -0.14 -2.86 9.70 22.27 0.22 -2.64 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 30 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 31 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 32 H 0.12 4.40 7.62 -2.91 -0.02 4.38 16 33 H 0.01 0.81 7.61 -2.39 -0.02 0.79 16 34 H 0.03 1.55 8.11 -2.39 -0.02 1.54 16 35 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.08 2.91 7.84 -2.39 -0.02 2.89 16 37 H 0.09 3.07 6.91 -2.39 -0.02 3.06 16 38 H 0.10 2.95 7.71 -2.39 -0.02 2.93 16 39 H 0.09 2.49 8.03 -2.39 -0.02 2.47 16 40 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.15 3.63 7.61 -2.92 -0.02 3.60 16 44 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -72.79 380.78 1.40 -71.39 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.97 Total: 18.43 kcal Atomic # 6 Polarization: -59.88 SS G_CDS: 3.99 Total: -55.89 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -1.15 Total: -98.20 kcal Atomic # 8 Polarization: -92.44 SS G_CDS: -4.11 Total: -96.54 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 113.91 SS G_CDS: -0.32 Total: 113.59 kcal Total: -72.79 1.40 -71.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264103736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.429 kcal (2) G-P(sol) polarization free energy of solvation -72.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds