Wall clock time and date at job start Tue Mar 31 2020 13:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47369 * 2 1 4 4 C 1.38260 * 119.99758 * 265.02247 * 3 2 1 5 5 C 1.38207 * 119.99666 * 179.71961 * 4 3 2 6 6 C 1.38263 * 120.00112 * 0.51413 * 5 4 3 7 7 S 1.76201 * 119.99975 * 179.76231 * 6 5 4 8 8 O 1.42099 * 106.40002 * 156.17978 * 7 6 5 9 9 O 1.42107 * 106.40139 * 23.26457 * 7 6 5 10 10 N 1.65590 * 107.21770 * 269.72286 * 7 6 5 11 11 C 1.36943 * 119.99870 * 90.00417 * 10 7 6 12 12 H 1.08003 * 119.99842 * 228.29041 * 11 10 7 13 13 C 1.38813 * 120.00052 * 48.28862 * 11 10 7 14 14 N 1.31614 * 120.00290 * 25.30812 * 13 11 10 15 15 Si 1.86796 * 119.99888 * 205.30510 * 13 11 10 16 16 H 1.48499 * 109.47101 * 90.00091 * 15 13 11 17 17 H 1.48499 * 109.47285 * 210.00303 * 15 13 11 18 18 H 1.48503 * 109.47466 * 330.00377 * 15 13 11 19 19 C 1.46494 * 120.00411 * 269.72246 * 10 7 6 20 20 C 1.53000 * 117.50469 * 188.20362 * 19 10 7 21 21 C 1.53002 * 117.50023 * 119.54203 * 19 10 7 22 22 C 1.38210 * 119.99816 * 359.48528 * 6 5 4 23 23 C 1.38209 * 120.00186 * 85.00129 * 3 2 1 24 24 C 1.50701 * 119.99978 * 359.97438 * 23 3 2 25 25 C 1.53001 * 109.47215 * 85.02358 * 24 23 3 26 26 H 1.08999 * 109.47450 * 60.00048 * 1 2 3 27 27 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46977 * 300.00214 * 1 2 3 29 29 H 1.09006 * 109.46977 * 239.99786 * 2 1 3 30 30 H 1.09005 * 109.47207 * 120.00350 * 2 1 3 31 31 H 1.07998 * 119.99748 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.00088 * 180.27328 * 5 4 3 33 33 H 0.96993 * 120.00523 * 174.20804 * 14 13 11 34 34 H 1.09008 * 115.55084 * 333.87698 * 19 10 7 35 35 H 1.09003 * 117.49688 * 359.97438 * 20 19 10 36 36 H 1.09005 * 117.50176 * 145.02172 * 20 19 10 37 37 H 1.09004 * 117.50323 * 214.98420 * 21 19 10 38 38 H 1.09000 * 117.49875 * 359.97438 * 21 19 10 39 39 H 1.08001 * 119.99935 * 180.27666 * 22 6 5 40 40 H 1.08999 * 109.47504 * 205.02281 * 24 23 3 41 41 H 1.09005 * 109.47179 * 325.02921 * 24 23 3 42 42 H 1.08997 * 109.47383 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.46822 * 300.00341 * 25 24 23 44 44 H 1.08999 * 109.47163 * 59.99529 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0379 -1.1929 5 6 2.8160 3.3428 -1.1934 6 6 2.9531 4.0276 -0.0001 7 16 3.5395 5.6892 -0.0003 8 8 3.0588 6.2844 1.1972 9 8 3.2641 6.2118 -1.2928 10 7 5.1884 5.6271 0.1375 11 6 5.9677 5.5670 -0.9870 12 1 6.7584 4.8347 -1.0575 13 6 5.7414 6.4474 -2.0361 14 7 5.1717 7.6115 -1.8071 15 14 6.2455 5.9798 -3.7729 16 1 5.1199 5.2811 -4.4438 17 1 6.5915 7.2063 -4.5351 18 1 7.4258 5.0800 -3.7206 19 6 5.8140 5.6427 1.4621 20 6 7.3368 5.7772 1.5228 21 6 6.6727 4.4379 1.8521 22 6 2.6248 3.4107 1.1923 23 6 2.1644 2.1071 1.1924 24 6 1.8055 1.4349 2.4925 25 6 3.0025 0.6256 2.9957 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2568 1.5018 -2.1246 32 1 3.0683 3.8264 -2.1256 33 1 5.0895 8.2605 -2.5233 34 1 5.2345 6.1238 2.2501 35 1 7.8734 5.8536 0.5771 36 1 7.7593 6.3464 2.3509 37 1 6.6585 4.1266 2.8966 38 1 6.7719 3.6335 1.1232 39 1 2.7277 3.9472 2.1240 40 1 1.5415 2.1910 3.2318 41 1 0.9571 0.7688 2.3350 42 1 2.7430 0.1397 3.9363 43 1 3.2664 -0.1306 2.2563 44 1 3.8509 1.2915 3.1530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270152249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:02 Heat of formation + Delta-G solvation = -27.790155 kcal Electronic energy + Delta-G solvation = -26552.925503 eV Core-core repulsion = 22983.952958 eV Total energy + Delta-G solvation = -3568.972545 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.39192 -37.13746 -35.64200 -34.49495 -34.09489 -33.31224 -33.24327 -30.60516 -29.58841 -28.79193 -24.93128 -24.35435 -23.33026 -21.57987 -21.38081 -20.60443 -20.34466 -18.82268 -17.15274 -16.16303 -16.05596 -15.81695 -15.19560 -15.03770 -14.33025 -14.05680 -13.94882 -13.73007 -13.68392 -13.49479 -13.10646 -13.02235 -12.58911 -12.32746 -12.26362 -11.77902 -11.69426 -11.47127 -11.39116 -11.28009 -11.13335 -11.07319 -10.84866 -10.77933 -10.60941 -10.48189 -10.40627 -10.31528 -10.24894 -9.95518 -9.50693 -9.34201 -8.65872 -8.51224 -8.28849 -7.51754 -6.51230 -4.12610 1.42062 1.80360 2.02758 3.20555 3.26855 3.29984 3.92151 4.12877 4.61819 4.74289 4.81720 4.91569 4.94337 5.02124 5.05073 5.31069 5.38112 5.39015 5.45243 5.50834 5.65432 5.69122 5.74619 5.78087 5.80152 5.83330 5.84871 5.87885 5.94200 6.05142 6.12476 6.21710 6.27369 6.31604 6.41587 6.42135 6.57470 6.72901 6.74984 6.90413 6.91163 7.00678 7.41301 7.42082 7.52652 8.22061 8.90937 9.33431 10.54492 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.005349 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.782600 B = 5232.976754 C = 6004.824502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.053 4.053 4 C -0.145 4.145 5 C -0.023 4.023 6 C -0.659 4.659 7 S 2.572 3.428 8 O -1.014 7.014 9 O -0.943 6.943 10 N -0.788 5.788 11 C -0.290 4.290 12 H 0.082 0.918 13 C 0.063 3.937 14 N -0.775 5.775 15 Si 0.920 3.080 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.269 1.269 19 C 0.096 3.904 20 C -0.163 4.163 21 C -0.213 4.213 22 C -0.027 4.027 23 C -0.111 4.111 24 C -0.085 4.085 25 C -0.147 4.147 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.280 0.720 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.339 -12.382 4.557 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.054 4.054 4 C -0.163 4.163 5 C -0.042 4.042 6 C -0.736 4.736 7 S 2.671 3.329 8 O -1.003 7.003 9 O -0.931 6.931 10 N -0.610 5.610 11 C -0.436 4.436 12 H 0.099 0.901 13 C -0.155 4.155 14 N -0.410 5.410 15 Si 0.745 3.255 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.193 1.193 19 C -0.013 4.013 20 C -0.202 4.202 21 C -0.253 4.253 22 C -0.046 4.046 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.204 4.204 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.145 0.855 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.305 -11.582 4.522 12.865 hybrid contribution 0.140 -0.895 -0.911 1.285 sum -3.165 -12.477 3.611 13.369 Atomic orbital electron populations 1.21756 0.94878 1.01381 1.02393 1.20625 0.96113 0.93129 1.02760 1.19774 0.97228 0.95418 0.92932 1.21084 1.02395 0.95735 0.97133 1.20888 0.92603 0.93330 0.97380 1.32563 1.12144 1.31177 0.97669 1.09956 0.74483 0.75268 0.73221 1.93297 1.81353 1.76469 1.49219 1.93441 1.83951 1.75847 1.39902 1.52330 1.20238 1.81484 1.06971 1.18901 1.15390 1.15855 0.93492 0.90061 1.25663 0.95249 0.93575 1.01047 1.69812 1.32521 1.03882 1.34759 0.86065 0.78905 0.78591 0.81936 1.19530 1.20657 1.19320 1.21372 0.92284 1.00115 0.87501 1.23070 0.95439 0.98760 1.02963 1.23340 1.08161 0.93068 1.00713 1.20723 0.93505 0.93362 0.97042 1.19744 1.02348 0.94691 0.94386 1.20552 0.98413 0.99152 0.94094 1.21769 0.98288 1.00023 1.00358 0.92517 0.92565 0.92412 0.91236 0.90692 0.86336 0.84923 0.90961 0.86479 0.87359 0.89836 0.89893 0.89073 0.85528 0.91174 0.91070 0.92686 0.92651 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.72 37.16 0.36 -1.15 16 2 C -0.09 -1.03 5.38 -27.88 -0.15 -1.18 16 3 C -0.05 -0.82 5.13 -104.62 -0.54 -1.36 16 4 C -0.14 -2.46 9.68 -39.58 -0.38 -2.84 16 5 C -0.02 -0.47 9.52 -39.58 -0.38 -0.84 16 6 C -0.66 -14.33 5.97 -39.58 -0.24 -14.57 16 7 S 2.57 65.03 5.45 -107.50 -0.59 64.45 16 8 O -1.01 -27.14 16.06 -57.17 -0.92 -28.06 16 9 O -0.94 -26.47 13.27 -57.17 -0.76 -27.23 16 10 N -0.79 -19.05 3.05 -53.42 -0.16 -19.21 16 11 C -0.29 -7.16 7.69 -15.06 -0.12 -7.28 16 12 H 0.08 1.90 7.72 -52.48 -0.41 1.50 16 13 C 0.06 1.61 4.00 -17.43 -0.07 1.54 16 14 N -0.78 -21.30 11.52 55.49 0.64 -20.66 16 15 Si 0.92 19.89 29.63 -169.99 -5.04 14.86 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 C 0.10 2.03 6.38 -67.93 -0.43 1.60 16 20 C -0.16 -2.97 9.84 -26.69 -0.26 -3.23 16 21 C -0.21 -3.72 10.29 -26.69 -0.27 -3.99 16 22 C -0.03 -0.53 9.16 -39.59 -0.36 -0.89 16 23 C -0.11 -1.80 5.13 -104.63 -0.54 -2.34 16 24 C -0.08 -1.07 5.38 -27.88 -0.15 -1.22 16 25 C -0.15 -1.64 9.72 37.16 0.36 -1.28 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.61 6.80 -51.93 -0.35 0.25 16 29 H 0.07 0.73 8.05 -51.93 -0.42 0.32 16 30 H 0.07 0.79 5.62 -51.93 -0.29 0.49 16 31 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.13 2.75 7.61 -52.48 -0.40 2.35 16 33 H 0.28 7.24 8.32 -40.82 -0.34 6.90 16 34 H 0.12 2.44 7.38 -51.92 -0.38 2.06 16 35 H 0.11 2.10 6.96 -51.93 -0.36 1.73 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.13 2.40 7.62 -52.49 -0.40 2.00 16 40 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 41 H 0.07 0.78 5.62 -51.93 -0.29 0.49 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.60 6.80 -51.93 -0.35 0.25 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -30.92 364.92 -11.08 -42.00 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.59 Total: 7.40 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: -3.17 Total: -39.04 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.48 Total: -39.87 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -1.68 Total: -55.30 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.04 Total: 14.86 kcal Atomic # 16 Polarization: 65.03 SS G_CDS: -0.59 Total: 64.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.92 -11.08 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270152249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.212 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds