Wall clock time and date at job start Tue Mar 31 2020 13:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47369 * 2 1 4 4 C 1.38260 * 119.99758 * 265.02247 * 3 2 1 5 5 C 1.38207 * 119.99666 * 179.71961 * 4 3 2 6 6 C 1.38263 * 120.00112 * 0.51413 * 5 4 3 7 7 S 1.76201 * 119.99975 * 179.76231 * 6 5 4 8 8 O 1.42099 * 106.40002 * 156.17978 * 7 6 5 9 9 O 1.42107 * 106.40139 * 23.26457 * 7 6 5 10 10 N 1.65590 * 107.21770 * 269.72286 * 7 6 5 11 11 C 1.36943 * 119.99870 * 90.00417 * 10 7 6 12 12 H 1.08003 * 119.99842 * 228.29041 * 11 10 7 13 13 C 1.38813 * 120.00052 * 48.28862 * 11 10 7 14 14 N 1.31614 * 120.00290 * 25.30812 * 13 11 10 15 15 Si 1.86796 * 119.99888 * 205.30510 * 13 11 10 16 16 H 1.48499 * 109.47101 * 90.00091 * 15 13 11 17 17 H 1.48499 * 109.47285 * 210.00303 * 15 13 11 18 18 H 1.48503 * 109.47466 * 330.00377 * 15 13 11 19 19 C 1.46494 * 120.00411 * 269.72246 * 10 7 6 20 20 C 1.53000 * 117.50469 * 188.20362 * 19 10 7 21 21 C 1.53002 * 117.50023 * 119.54203 * 19 10 7 22 22 C 1.38210 * 119.99816 * 359.48528 * 6 5 4 23 23 C 1.38209 * 120.00186 * 85.00129 * 3 2 1 24 24 C 1.50701 * 119.99978 * 359.97438 * 23 3 2 25 25 C 1.53001 * 109.47215 * 85.02358 * 24 23 3 26 26 H 1.08999 * 109.47450 * 60.00048 * 1 2 3 27 27 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46977 * 300.00214 * 1 2 3 29 29 H 1.09006 * 109.46977 * 239.99786 * 2 1 3 30 30 H 1.09005 * 109.47207 * 120.00350 * 2 1 3 31 31 H 1.07998 * 119.99748 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.00088 * 180.27328 * 5 4 3 33 33 H 0.96993 * 120.00523 * 174.20804 * 14 13 11 34 34 H 1.09008 * 115.55084 * 333.87698 * 19 10 7 35 35 H 1.09003 * 117.49688 * 359.97438 * 20 19 10 36 36 H 1.09005 * 117.50176 * 145.02172 * 20 19 10 37 37 H 1.09004 * 117.50323 * 214.98420 * 21 19 10 38 38 H 1.09000 * 117.49875 * 359.97438 * 21 19 10 39 39 H 1.08001 * 119.99935 * 180.27666 * 22 6 5 40 40 H 1.08999 * 109.47504 * 205.02281 * 24 23 3 41 41 H 1.09005 * 109.47179 * 325.02921 * 24 23 3 42 42 H 1.08997 * 109.47383 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.46822 * 300.00341 * 25 24 23 44 44 H 1.08999 * 109.47163 * 59.99529 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0379 -1.1929 5 6 2.8160 3.3428 -1.1934 6 6 2.9531 4.0276 -0.0001 7 16 3.5395 5.6892 -0.0003 8 8 3.0588 6.2844 1.1972 9 8 3.2641 6.2118 -1.2928 10 7 5.1884 5.6271 0.1375 11 6 5.9677 5.5670 -0.9870 12 1 6.7584 4.8347 -1.0575 13 6 5.7414 6.4474 -2.0361 14 7 5.1717 7.6115 -1.8071 15 14 6.2455 5.9798 -3.7729 16 1 5.1199 5.2811 -4.4438 17 1 6.5915 7.2063 -4.5351 18 1 7.4258 5.0800 -3.7206 19 6 5.8140 5.6427 1.4621 20 6 7.3368 5.7772 1.5228 21 6 6.6727 4.4379 1.8521 22 6 2.6248 3.4107 1.1923 23 6 2.1644 2.1071 1.1924 24 6 1.8055 1.4349 2.4925 25 6 3.0025 0.6256 2.9957 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2568 1.5018 -2.1246 32 1 3.0683 3.8264 -2.1256 33 1 5.0895 8.2605 -2.5233 34 1 5.2345 6.1238 2.2501 35 1 7.8734 5.8536 0.5771 36 1 7.7593 6.3464 2.3509 37 1 6.6585 4.1266 2.8966 38 1 6.7719 3.6335 1.1232 39 1 2.7277 3.9472 2.1240 40 1 1.5415 2.1910 3.2318 41 1 0.9571 0.7688 2.3350 42 1 2.7430 0.1397 3.9363 43 1 3.2664 -0.1306 2.2563 44 1 3.8509 1.2915 3.1530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270152249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:01 Heat of formation + Delta-G solvation = -45.302269 kcal Electronic energy + Delta-G solvation = -26553.684885 eV Core-core repulsion = 22983.952958 eV Total energy + Delta-G solvation = -3569.731927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.71152 -38.77851 -37.68831 -36.18456 -35.67602 -35.07615 -34.37244 -32.44893 -30.84598 -29.99698 -26.82186 -25.44061 -24.53066 -23.02830 -22.55167 -22.24921 -21.73178 -20.69333 -18.87295 -17.96201 -17.70815 -17.17050 -16.95010 -16.46900 -16.03018 -15.54735 -15.37427 -15.22994 -14.85110 -14.60147 -14.49618 -14.20897 -14.10251 -13.76445 -13.48465 -13.25899 -13.13450 -12.99133 -12.91842 -12.67833 -12.57784 -12.48368 -12.33601 -12.17763 -12.14602 -12.12517 -12.00043 -11.91949 -11.64673 -11.49274 -11.14349 -10.97035 -10.53798 -9.93891 -9.67190 -9.31625 -8.42284 -6.08176 -0.09295 0.18540 0.37774 1.44729 1.51896 1.58916 2.30158 2.48850 2.87797 3.00116 3.21039 3.49003 3.67425 3.78355 3.91030 3.99117 4.13736 4.20812 4.26848 4.32590 4.38398 4.40568 4.44934 4.52638 4.57387 4.63641 4.77597 4.82858 4.86573 4.93232 4.96354 5.02062 5.07050 5.12376 5.23051 5.25485 5.32266 5.36224 5.40699 5.47594 5.48686 5.53708 5.60967 5.80224 6.03399 6.28493 7.02696 7.45149 8.64049 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.005349 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.782600 B = 5232.976754 C = 6004.824502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.043 4.043 4 C -0.142 4.142 5 C -0.047 4.047 6 C -0.680 4.680 7 S 2.577 3.423 8 O -1.042 7.042 9 O -0.983 6.983 10 N -0.801 5.801 11 C -0.295 4.295 12 H 0.092 0.908 13 C 0.020 3.980 14 N -0.824 5.824 15 Si 0.971 3.029 16 H -0.280 1.280 17 H -0.276 1.276 18 H -0.243 1.243 19 C 0.052 3.948 20 C -0.152 4.152 21 C -0.182 4.182 22 C -0.045 4.045 23 C -0.105 4.105 24 C -0.085 4.085 25 C -0.145 4.145 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.149 0.851 32 H 0.115 0.885 33 H 0.277 0.723 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 -16.566 5.413 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.043 4.043 4 C -0.161 4.161 5 C -0.067 4.067 6 C -0.763 4.763 7 S 2.680 3.320 8 O -1.032 7.032 9 O -0.972 6.972 10 N -0.623 5.623 11 C -0.440 4.440 12 H 0.110 0.890 13 C -0.194 4.194 14 N -0.460 5.460 15 Si 0.793 3.207 16 H -0.206 1.206 17 H -0.201 1.201 18 H -0.166 1.166 19 C -0.057 4.057 20 C -0.192 4.192 21 C -0.221 4.221 22 C -0.064 4.064 23 C -0.106 4.106 24 C -0.122 4.122 25 C -0.202 4.202 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.167 0.833 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.105 0.895 39 H 0.139 0.861 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.080 -15.723 5.391 16.905 hybrid contribution -0.023 0.250 -1.057 1.087 sum -3.102 -15.473 4.334 16.365 Atomic orbital electron populations 1.21766 0.93677 1.03014 1.01898 1.20754 0.96928 0.90113 1.04602 1.20321 0.94826 0.97378 0.91773 1.21419 1.01044 0.94299 0.99322 1.20884 0.94531 0.95126 0.96123 1.31884 1.15377 1.29490 0.99516 1.09038 0.74891 0.76096 0.71928 1.93239 1.82061 1.77985 1.49938 1.93383 1.84744 1.77734 1.41312 1.52197 1.19583 1.82449 1.08099 1.19157 1.15434 1.15617 0.93781 0.89040 1.26551 0.95076 0.93211 1.04579 1.69909 1.35276 1.05248 1.35607 0.85279 0.79044 0.78789 0.77538 1.20579 1.20124 1.16564 1.21609 0.93816 1.03998 0.86235 1.23139 0.92949 0.99662 1.03402 1.23352 1.04552 0.91885 1.02333 1.20820 0.94684 0.95070 0.95859 1.20178 1.00314 0.93343 0.96749 1.20676 0.99976 0.99585 0.91997 1.21763 0.96936 0.99692 1.01812 0.93380 0.89899 0.92669 0.89571 0.88794 0.83333 0.86695 0.91301 0.87356 0.88696 0.87000 0.86625 0.89529 0.86101 0.91131 0.88622 0.90134 0.91939 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.72 71.98 0.70 -1.67 16 2 C -0.09 -1.60 5.38 29.85 0.16 -1.44 16 3 C -0.04 -1.20 5.13 -19.87 -0.10 -1.30 16 4 C -0.14 -4.60 9.68 22.27 0.22 -4.38 16 5 C -0.05 -1.97 9.52 22.27 0.21 -1.75 16 6 C -0.68 -30.68 5.97 22.27 0.13 -30.54 16 7 S 2.58 137.93 5.45 -56.49 -0.31 137.62 16 8 O -1.04 -59.26 16.06 -128.00 -2.06 -61.31 16 9 O -0.98 -58.88 13.27 -128.00 -1.70 -60.58 16 10 N -0.80 -40.27 3.05 -322.93 -0.99 -41.26 16 11 C -0.29 -14.99 7.69 84.03 0.65 -14.34 16 12 H 0.09 4.33 7.72 -2.91 -0.02 4.31 16 13 C 0.02 1.05 4.00 84.86 0.34 1.39 16 14 N -0.82 -47.76 11.52 21.65 0.25 -47.51 16 15 Si 0.97 41.55 29.63 68.60 2.03 43.59 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.24 -9.26 7.11 99.48 0.71 -8.55 16 19 C 0.05 2.22 6.38 44.99 0.29 2.50 16 20 C -0.15 -5.44 9.84 30.62 0.30 -5.14 16 21 C -0.18 -6.09 10.29 30.62 0.31 -5.78 16 22 C -0.05 -1.77 9.16 22.27 0.20 -1.56 16 23 C -0.11 -3.21 5.13 -19.87 -0.10 -3.32 16 24 C -0.09 -1.87 5.38 29.85 0.16 -1.71 16 25 C -0.14 -2.69 9.72 71.98 0.70 -1.99 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.05 0.93 6.80 -2.38 -0.02 0.91 16 29 H 0.09 1.37 8.05 -2.38 -0.02 1.35 16 30 H 0.09 1.44 5.62 -2.38 -0.01 1.42 16 31 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.12 5.05 7.61 -2.91 -0.02 5.03 16 33 H 0.28 15.24 8.32 -92.71 -0.77 14.47 16 34 H 0.11 4.73 7.38 -2.38 -0.02 4.71 16 35 H 0.09 3.65 6.96 -2.39 -0.02 3.64 16 36 H 0.11 3.31 8.14 -2.38 -0.02 3.29 16 37 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.12 4.74 7.62 -2.91 -0.02 4.71 16 40 H 0.07 1.56 8.05 -2.39 -0.02 1.54 16 41 H 0.10 1.66 5.62 -2.38 -0.01 1.65 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.07 6.80 -2.39 -0.02 1.06 16 44 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -72.01 364.92 2.39 -69.61 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.99 Total: 30.88 kcal Atomic # 6 Polarization: -75.20 SS G_CDS: 4.17 Total: -71.03 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -0.74 Total: -88.77 kcal Atomic # 8 Polarization: -118.14 SS G_CDS: -3.75 Total: -121.89 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 137.93 SS G_CDS: -0.31 Total: 137.62 kcal Total: -72.01 2.39 -69.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270152249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.313 kcal (2) G-P(sol) polarization free energy of solvation -72.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds