Wall clock time and date at job start Tue Mar 31 2020 14:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47000 * 2 1 4 4 O 1.42891 * 109.47523 * 239.99915 * 2 1 3 5 5 C 1.53006 * 109.47186 * 119.99491 * 2 1 3 6 6 N 1.46507 * 109.46675 * 60.34466 * 5 2 1 7 7 C 1.46495 * 119.99514 * 82.98777 * 6 5 2 8 8 C 1.50705 * 109.47335 * 90.00164 * 7 6 5 9 9 C 1.38228 * 120.00292 * 89.99633 * 8 7 6 10 10 C 1.38233 * 120.00275 * 179.97438 * 9 8 7 11 11 C 1.38239 * 119.99750 * 359.97438 * 10 9 8 12 12 C 1.38235 * 119.99843 * 0.27040 * 11 10 9 13 13 C 1.38233 * 120.00004 * 359.51767 * 12 11 10 14 14 C 1.34776 * 120.00223 * 262.98724 * 6 5 2 15 15 O 1.21274 * 119.99984 * 184.15243 * 14 6 5 16 16 C 1.50702 * 119.99692 * 4.14894 * 14 6 5 17 17 S 1.81000 * 109.46955 * 186.47948 * 16 14 6 18 18 C 1.76202 * 100.00054 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99713 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99505 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00740 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99444 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47162 * 90.00123 * 22 20 18 24 24 H 1.48506 * 109.46921 * 210.00470 * 22 20 18 25 25 H 1.48504 * 109.46988 * 329.99860 * 22 20 18 26 26 H 1.09000 * 109.47183 * 306.00155 * 1 2 3 27 27 H 1.09002 * 109.46951 * 65.99970 * 1 2 3 28 28 H 1.08997 * 109.46739 * 185.99822 * 1 2 3 29 29 H 1.08997 * 109.47117 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47039 * 299.99430 * 3 2 1 31 31 H 1.08997 * 109.47240 * 59.99742 * 3 2 1 32 32 H 0.96701 * 114.00562 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47048 * 300.34836 * 5 2 1 34 34 H 1.08994 * 109.47083 * 180.34791 * 5 2 1 35 35 H 1.08999 * 109.47679 * 329.99713 * 7 6 5 36 36 H 1.09010 * 109.47008 * 209.99657 * 7 6 5 37 37 H 1.08001 * 120.00140 * 359.97438 * 9 8 7 38 38 H 1.07994 * 120.00437 * 179.97438 * 10 9 8 39 39 H 1.08002 * 119.99783 * 180.02562 * 11 10 9 40 40 H 1.08004 * 119.99881 * 179.72655 * 12 11 10 41 41 H 1.08000 * 119.99934 * 180.26812 * 13 12 11 42 42 H 1.09006 * 109.47069 * 306.47694 * 16 14 6 43 43 H 1.08990 * 109.47407 * 66.47975 * 16 14 6 44 44 H 0.96999 * 120.00304 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 1.5584 -2.1048 1.2452 7 6 2.2767 -3.1280 0.4815 8 6 3.3275 -3.7623 1.3558 9 6 3.0163 -4.8760 2.1132 10 6 3.9803 -5.4581 2.9148 11 6 5.2558 -4.9269 2.9586 12 6 5.5656 -3.8102 2.2050 13 6 4.6028 -3.2307 1.4001 14 6 0.4547 -2.4363 1.9441 15 8 0.0989 -3.5942 2.0023 16 6 -0.3372 -1.3680 2.6532 17 16 -1.6357 -2.1409 3.6495 18 6 -2.3827 -0.7049 4.3456 19 1 -1.9999 0.2750 4.1017 20 6 -3.4631 -0.8334 5.2075 21 7 -3.9293 -2.0278 5.5052 22 14 -4.2555 0.6891 5.9450 23 1 -5.3426 1.1634 5.0516 24 1 -4.8197 0.3570 7.2780 25 1 -3.2341 1.7569 6.0919 26 1 -0.3633 0.6041 0.8314 27 1 -0.3633 0.4180 -0.9388 28 1 -0.3633 -1.0220 0.1074 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 2.9704 -0.7121 -1.2326 33 1 1.6716 -0.2109 2.1393 34 1 3.1300 -0.7158 1.2525 35 1 2.7535 -2.6677 -0.3839 36 1 1.5741 -3.8910 0.1461 37 1 2.0199 -5.2913 2.0788 38 1 3.7371 -6.3279 3.5069 39 1 6.0091 -5.3820 3.5845 40 1 6.5609 -3.3925 2.2425 41 1 4.8460 -2.3608 0.8080 42 1 0.3255 -0.7946 3.3015 43 1 -0.7905 -0.7034 1.9179 44 1 -4.6841 -2.1175 6.1078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272031485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:14 Heat of formation + Delta-G solvation = -82.244076 kcal Electronic energy + Delta-G solvation = -25624.909625 eV Core-core repulsion = 22053.575781 eV Total energy + Delta-G solvation = -3571.333844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45228 -39.79777 -39.03821 -36.10755 -34.58607 -33.96781 -32.33325 -31.75887 -30.81522 -28.31927 -27.82594 -27.61402 -26.29543 -23.42884 -22.47602 -21.62271 -20.58973 -19.59528 -18.13250 -18.06621 -17.39777 -17.12553 -16.88437 -16.60466 -16.02666 -15.94801 -15.82260 -15.68261 -15.20411 -14.59257 -14.52759 -14.31218 -14.25366 -13.73463 -13.47154 -13.43675 -13.24675 -13.17834 -12.99907 -12.92138 -12.80109 -12.64828 -12.57428 -12.44241 -12.19687 -11.87233 -11.77406 -11.68770 -11.19925 -11.13632 -10.86946 -10.24730 -9.79664 -9.71177 -9.52700 -8.66357 -8.34521 -6.12717 0.37490 0.52467 1.26866 1.41828 1.46553 1.55974 1.61290 2.14545 2.27619 2.96800 2.99698 3.21029 3.37310 3.64896 3.74866 3.87291 3.93232 3.99323 4.10973 4.18338 4.19980 4.30835 4.36187 4.39044 4.47528 4.61422 4.66167 4.75972 4.79586 4.80143 4.86802 4.96699 5.06652 5.12742 5.18065 5.26174 5.34533 5.41053 5.56576 5.57256 5.64176 5.72833 6.14356 6.19382 6.28786 6.97240 7.06523 7.18215 8.74796 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.004025 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.392881 B = 6955.070901 C = 8526.404244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.123 3.877 3 C -0.170 4.170 4 O -0.565 6.565 5 C 0.075 3.925 6 N -0.588 5.588 7 C 0.163 3.837 8 C -0.116 4.116 9 C -0.123 4.123 10 C -0.140 4.140 11 C -0.123 4.123 12 C -0.125 4.125 13 C -0.104 4.104 14 C 0.531 3.469 15 O -0.561 6.561 16 C -0.135 4.135 17 S -0.155 6.155 18 C -0.543 4.543 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.256 1.256 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.390 0.610 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.142 0.858 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.647 6.220 -11.726 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.081 3.919 3 C -0.228 4.228 4 O -0.374 6.374 5 C -0.048 4.048 6 N -0.319 5.319 7 C 0.041 3.959 8 C -0.117 4.117 9 C -0.142 4.142 10 C -0.158 4.158 11 C -0.141 4.141 12 C -0.143 4.143 13 C -0.122 4.122 14 C 0.319 3.681 15 O -0.439 6.439 16 C -0.286 4.286 17 S 0.072 5.928 18 C -0.691 4.691 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.549 5.549 22 Si 0.819 3.181 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.180 1.180 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.240 0.760 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.140 0.860 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.119 0.881 43 H 0.136 0.864 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.440 4.344 -11.589 24.756 hybrid contribution -0.396 1.396 0.729 1.624 sum 21.043 5.741 -10.861 24.366 Atomic orbital electron populations 1.22008 0.94840 1.01300 1.02756 1.21509 0.93751 0.92061 0.84583 1.22385 1.02937 0.94120 1.03382 1.86615 1.27993 1.79449 1.43339 1.22688 1.01839 0.80519 0.99729 1.47720 1.25620 1.10019 1.48590 1.20422 0.92125 0.90570 0.92769 1.20377 0.96027 0.95965 0.99350 1.21258 0.98767 0.97046 0.97164 1.21356 0.94293 1.00865 0.99303 1.21484 0.96127 0.96967 0.99556 1.21525 1.00596 0.95854 0.96298 1.21345 0.91484 1.00176 0.99190 1.20119 0.80837 0.88736 0.78431 1.90658 1.69592 1.21710 1.61937 1.23767 1.00820 1.01244 1.02770 1.85600 1.35853 1.14441 1.56906 1.23168 1.19530 0.93385 1.32990 0.89917 1.26116 0.96434 1.00509 0.95964 1.70190 1.25156 1.24733 1.34794 0.84977 0.78470 0.77284 0.77408 1.19319 1.20361 1.17953 0.90635 0.91491 0.94525 0.89540 0.91559 0.91116 0.76027 0.89265 0.86587 0.85674 0.92430 0.88733 0.86018 0.84022 0.82934 0.82711 0.88147 0.86446 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 7.16 71.98 0.52 -3.17 16 2 C 0.12 2.07 1.17 -10.79 -0.01 2.05 16 3 C -0.17 -1.93 8.82 71.98 0.63 -1.29 16 4 O -0.57 -8.97 11.19 -148.98 -1.67 -10.64 16 5 C 0.07 1.37 4.70 86.38 0.41 1.78 16 6 N -0.59 -16.01 2.09 -826.13 -1.72 -17.73 16 7 C 0.16 3.98 5.24 85.64 0.45 4.43 16 8 C -0.12 -2.83 5.46 -19.87 -0.11 -2.94 16 9 C -0.12 -3.72 9.60 22.27 0.21 -3.50 16 10 C -0.14 -3.59 10.05 22.27 0.22 -3.36 16 11 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 12 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 13 C -0.10 -1.76 9.70 22.27 0.22 -1.55 16 14 C 0.53 20.79 6.41 87.66 0.56 21.35 16 15 O -0.56 -27.06 14.76 -3.01 -0.04 -27.11 16 16 C -0.14 -5.59 4.63 71.24 0.33 -5.26 16 17 S -0.16 -8.82 20.59 -56.49 -1.16 -9.98 16 18 C -0.54 -31.21 9.50 67.95 0.65 -30.56 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.83 5.49 84.86 0.47 1.29 16 21 N -0.91 -56.65 13.22 21.65 0.29 -56.37 16 22 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 26 H 0.07 1.82 6.86 -2.39 -0.02 1.80 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.13 5.71 -2.39 -0.01 1.11 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.39 2.45 8.64 -74.06 -0.64 1.81 16 33 H 0.09 1.77 6.03 -2.39 -0.01 1.75 16 34 H 0.12 1.27 8.12 -2.39 -0.02 1.25 16 35 H 0.13 2.07 6.11 -2.39 -0.01 2.05 16 36 H 0.06 1.78 7.43 -2.38 -0.02 1.76 16 37 H 0.09 3.45 7.41 -2.91 -0.02 3.43 16 38 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 42 H 0.10 3.76 6.92 -2.39 -0.02 3.75 16 43 H 0.12 4.47 4.33 -2.40 -0.01 4.46 16 44 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -81.75 369.22 3.08 -78.67 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.37 Total: 22.19 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 4.99 Total: -24.73 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -1.44 Total: -74.10 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -1.71 Total: -37.75 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -81.75 3.08 -78.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272031485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.572 kcal (2) G-P(sol) polarization free energy of solvation -81.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds