Wall clock time and date at job start Tue Mar 31 2020 14:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46866 * 2 1 4 4 C 1.52991 * 109.47237 * 120.00072 * 2 1 3 5 5 H 1.09003 * 110.38044 * 302.93706 * 4 2 1 6 6 C 1.53755 * 110.61530 * 180.53817 * 4 2 1 7 7 N 1.46532 * 105.18273 * 241.49469 * 6 4 2 8 8 S 1.65604 * 124.95251 * 179.89243 * 7 6 4 9 9 O 1.42104 * 104.27465 * 153.64498 * 8 7 6 10 10 O 1.42103 * 104.27585 * 25.79403 * 8 7 6 11 11 C 1.81390 * 104.45012 * 269.71746 * 8 7 6 12 12 C 1.52998 * 109.47261 * 179.97438 * 11 8 7 13 13 C 1.50707 * 109.47509 * 180.02562 * 12 11 8 14 14 H 1.07997 * 119.99407 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99794 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00715 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99558 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47448 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47538 * 119.99916 * 17 15 13 20 20 H 1.48503 * 109.47163 * 239.99864 * 17 15 13 21 21 C 1.39576 * 110.09092 * 359.62441 * 7 6 4 22 22 C 1.39681 * 129.32054 * 180.24233 * 21 7 6 23 23 C 1.37830 * 120.27765 * 180.02562 * 22 21 7 24 24 C 1.38307 * 120.23364 * 359.97438 * 23 22 21 25 25 C 1.38232 * 119.83037 * 359.97438 * 24 23 22 26 26 C 1.38173 * 120.15312 * 0.02562 * 25 24 23 27 27 H 1.08995 * 109.47407 * 292.59410 * 1 2 3 28 28 H 1.09007 * 109.47399 * 52.59449 * 1 2 3 29 29 H 1.08999 * 109.47273 * 172.59187 * 1 2 3 30 30 H 1.08999 * 109.47181 * 240.00424 * 2 1 3 31 31 H 1.09002 * 109.47172 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47574 * 299.99765 * 3 2 1 33 33 H 1.09001 * 109.47374 * 60.00092 * 3 2 1 34 34 H 1.08994 * 110.40638 * 122.51221 * 6 4 2 35 35 H 1.08998 * 110.18710 * 0.36502 * 6 4 2 36 36 H 1.09001 * 109.47828 * 300.00042 * 11 8 7 37 37 H 1.09005 * 109.47024 * 60.00225 * 11 8 7 38 38 H 1.09001 * 109.47312 * 300.00531 * 12 11 8 39 39 H 1.09006 * 109.47265 * 60.00504 * 12 11 8 40 40 H 0.97001 * 120.00500 * 180.02562 * 16 15 13 41 41 H 1.07992 * 119.86177 * 0.02562 * 22 21 7 42 42 H 1.07993 * 119.88354 * 179.97438 * 23 22 21 43 43 H 1.07996 * 120.08333 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.92206 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 1 1.6427 -0.2501 2.1483 6 6 3.5772 -0.7249 1.2825 7 7 3.9584 -2.1393 1.2493 8 16 5.5155 -2.7028 1.2641 9 8 5.4135 -3.9995 1.8365 10 8 6.2544 -1.6739 1.9081 11 6 5.9732 -2.8144 -0.4875 12 6 7.4090 -3.3292 -0.6078 13 6 7.7895 -3.4213 -2.0631 14 1 7.0785 -3.1403 -2.8259 15 6 9.0452 -3.8643 -2.4205 16 7 9.9112 -4.2059 -1.4917 17 14 9.5171 -3.9777 -4.2244 18 1 8.3737 -3.5382 -5.0638 19 1 10.6885 -3.1033 -4.4857 20 1 9.8640 -5.3826 -4.5579 21 6 2.8176 -2.9426 1.2096 22 6 2.7165 -4.3352 1.1741 23 6 1.4793 -4.9415 1.1369 24 6 0.3280 -4.1750 1.1348 25 6 0.4198 -2.7962 1.1708 26 6 1.6578 -2.1838 1.2082 27 1 -0.3634 0.3948 0.9487 28 1 -0.3634 0.6243 -0.8164 29 1 -0.3634 -1.0191 -0.1325 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.9386 -0.2572 2.1983 35 1 3.9736 -0.2058 0.4098 36 1 5.2969 -3.5009 -0.9969 37 1 5.9019 -1.8277 -0.9453 38 1 8.0851 -2.6424 -0.0986 39 1 7.4808 -4.3159 -0.1500 40 1 10.7948 -4.5172 -1.7432 41 1 3.6115 -4.9396 1.1759 42 1 1.4085 -6.0187 1.1092 43 1 -0.6402 -4.6525 1.1052 44 1 -0.4782 -2.1963 1.1688 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278003461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:21 Heat of formation + Delta-G solvation = -76.333927 kcal Electronic energy + Delta-G solvation = -25851.326402 eV Core-core repulsion = 22280.248840 eV Total energy + Delta-G solvation = -3571.077561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76173 -38.53812 -37.74395 -37.26938 -36.37000 -35.97842 -33.23100 -32.10979 -30.52209 -29.73124 -27.70228 -27.68469 -24.33531 -24.11690 -23.21144 -22.58493 -20.86979 -20.31242 -19.25703 -18.46083 -17.61430 -17.45181 -16.96646 -16.66481 -16.57589 -16.22440 -15.72901 -15.32744 -15.23445 -14.86668 -14.54411 -14.20536 -14.04293 -13.83556 -13.82084 -13.59169 -13.41742 -13.30382 -13.09373 -13.01068 -13.00274 -12.87983 -12.79945 -12.40361 -12.36159 -12.21972 -12.10895 -11.87056 -11.72159 -11.56591 -11.39757 -11.24470 -11.09747 -10.69820 -9.70685 -8.88009 -8.30307 -6.45152 -1.03063 0.45607 0.48762 1.38977 1.39656 1.40242 1.53210 2.34707 2.57350 2.84979 2.87758 3.03203 3.21206 3.54199 3.81660 3.86397 3.91240 3.98691 4.13033 4.18072 4.33207 4.40464 4.47575 4.55128 4.60873 4.62673 4.64202 4.77990 4.88106 4.93057 4.97301 5.11508 5.16193 5.16616 5.19218 5.25002 5.34110 5.39138 5.48467 5.55013 5.57504 5.62849 5.65026 5.70440 5.99369 6.14430 6.67661 7.25446 8.82171 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.003765 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.899265 B = 7434.716082 C = 7852.790330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.036 4.036 5 H 0.113 0.887 6 C 0.099 3.901 7 N -0.941 5.941 8 S 2.611 3.389 9 O -0.977 6.977 10 O -0.978 6.978 11 C -0.579 4.579 12 C 0.023 3.977 13 C -0.540 4.540 14 H 0.075 0.925 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.975 3.025 18 H -0.257 1.257 19 H -0.276 1.276 20 H -0.277 1.277 21 C 0.136 3.864 22 C -0.183 4.183 23 C -0.092 4.092 24 C -0.142 4.142 25 C -0.075 4.075 26 C -0.129 4.129 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.269 0.731 41 H 0.118 0.882 42 H 0.145 0.855 43 H 0.158 0.842 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.569 8.199 2.981 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 C -0.211 4.211 4 C -0.056 4.056 5 H 0.131 0.869 6 C -0.024 4.024 7 N -0.764 5.764 8 S 2.711 3.289 9 O -0.967 6.967 10 O -0.969 6.969 11 C -0.712 4.712 12 C -0.016 4.016 13 C -0.579 4.579 14 H 0.093 0.907 15 C -0.200 4.200 16 N -0.572 5.572 17 Si 0.799 3.201 18 H -0.180 1.180 19 H -0.201 1.201 20 H -0.202 1.202 21 C 0.040 3.960 22 C -0.205 4.205 23 C -0.111 4.111 24 C -0.161 4.161 25 C -0.093 4.093 26 C -0.133 4.133 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.078 0.922 41 H 0.136 0.864 42 H 0.163 0.837 43 H 0.176 0.824 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -23.722 8.008 3.846 25.331 hybrid contribution 1.216 -0.400 -1.109 1.693 sum -22.507 7.608 2.737 23.915 Atomic orbital electron populations 1.21980 0.93371 1.02612 1.02718 1.21113 0.97426 0.96028 0.95628 1.21959 1.01140 0.95021 1.02967 1.20819 0.91736 0.91754 1.01255 0.86926 1.22441 0.97188 0.78538 1.04233 1.56189 1.20744 1.14950 1.84562 1.05030 0.71857 0.73085 0.78889 1.93498 1.84996 1.41380 1.76826 1.93512 1.70411 1.58867 1.74081 1.30319 1.07692 1.11763 1.21426 1.18841 0.87904 0.95499 0.99377 1.21481 0.99553 1.45086 0.91780 0.90731 1.26106 0.96304 0.94355 1.03223 1.70097 1.07004 1.44705 1.35399 0.85244 0.78612 0.78048 0.78231 1.18035 1.20118 1.20225 1.18360 0.86504 0.91710 0.99438 1.21154 1.00488 0.91817 1.07040 1.21148 0.91009 1.01166 0.97763 1.21417 0.99118 0.93545 1.02020 1.20902 0.96028 0.94815 0.97585 1.20323 0.92371 0.95056 1.05598 0.91419 0.91931 0.91767 0.92062 0.92816 0.91691 0.91270 0.89259 0.88561 0.84417 0.83806 0.97170 0.97307 0.92242 0.86375 0.83748 0.82447 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.48 71.98 0.61 -0.99 16 2 C -0.08 -1.22 2.38 -10.80 -0.03 -1.25 16 3 C -0.15 -1.94 8.93 71.98 0.64 -1.30 16 4 C -0.04 -0.66 2.59 -11.12 -0.03 -0.69 16 5 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 6 C 0.10 2.35 6.22 86.63 0.54 2.89 16 7 N -0.94 -29.06 3.40 -337.79 -1.15 -30.20 16 8 S 2.61 102.17 5.56 -56.49 -0.31 101.86 16 9 O -0.98 -43.30 15.25 -127.65 -1.95 -45.25 16 10 O -0.98 -42.64 17.56 -127.65 -2.24 -44.88 16 11 C -0.58 -23.29 6.12 71.98 0.44 -22.85 16 12 C 0.02 1.22 4.98 29.85 0.15 1.37 16 13 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 14 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 15 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 16 N -0.93 -56.84 13.29 21.44 0.28 -56.56 16 17 Si 0.98 43.40 29.54 68.60 2.03 45.42 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 C 0.14 4.00 6.59 38.34 0.25 4.25 16 22 C -0.18 -5.54 9.37 22.52 0.21 -5.32 16 23 C -0.09 -2.09 10.02 22.19 0.22 -1.86 16 24 C -0.14 -2.44 10.06 22.28 0.22 -2.22 16 25 C -0.08 -1.28 8.72 22.25 0.19 -1.09 16 26 C -0.13 -2.85 5.47 -19.63 -0.11 -2.96 16 27 H 0.07 0.58 8.13 -2.39 -0.02 0.56 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.68 5.32 -2.39 -0.01 0.67 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.75 6.48 -2.39 -0.02 0.73 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.10 2.00 6.35 -2.39 -0.02 1.99 16 36 H 0.14 5.07 8.14 -2.39 -0.02 5.05 16 37 H 0.14 5.04 8.14 -2.39 -0.02 5.02 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.12 4.12 6.11 -2.91 -0.02 4.10 16 42 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 43 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 44 H 0.16 1.66 6.24 -2.91 -0.02 1.65 16 Total: -1.00 -75.48 362.62 1.67 -73.81 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.99 Total: 17.49 kcal Atomic # 6 Polarization: -65.70 SS G_CDS: 4.02 Total: -61.69 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -0.86 Total: -86.76 kcal Atomic # 8 Polarization: -85.95 SS G_CDS: -4.19 Total: -90.13 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 102.17 SS G_CDS: -0.31 Total: 101.86 kcal Total: -75.48 1.67 -73.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278003461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.522 kcal (2) G-P(sol) polarization free energy of solvation -75.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds