Wall clock time and date at job start Tue Mar 31 2020 14:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47662 * 2 1 4 4 C 1.53006 * 109.47118 * 120.00314 * 2 1 3 5 5 H 1.08997 * 110.46718 * 297.07017 * 4 2 1 6 6 C 1.53757 * 109.87848 * 59.83103 * 4 2 1 7 7 N 1.46534 * 105.18273 * 119.01869 * 6 4 2 8 8 S 1.65604 * 124.95535 * 179.53901 * 7 6 4 9 9 O 1.42097 * 104.27491 * 26.07603 * 8 7 6 10 10 O 1.42097 * 104.27454 * 153.92854 * 8 7 6 11 11 C 1.81396 * 104.45139 * 270.00601 * 8 7 6 12 12 C 1.52997 * 109.47074 * 180.02562 * 11 8 7 13 13 C 1.50705 * 109.46874 * 179.97438 * 12 11 8 14 14 H 1.07993 * 120.00087 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99625 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99986 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00057 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47119 * 90.00483 * 17 15 13 19 19 H 1.48511 * 109.46932 * 210.00013 * 17 15 13 20 20 H 1.48500 * 109.47483 * 329.99973 * 17 15 13 21 21 C 1.39573 * 110.08643 * 359.52454 * 7 6 4 22 22 C 1.39672 * 129.31725 * 180.02562 * 21 7 6 23 23 C 1.37829 * 120.28076 * 179.70141 * 22 21 7 24 24 C 1.38302 * 120.23143 * 0.25654 * 23 22 21 25 25 C 1.38234 * 119.83298 * 359.97438 * 24 23 22 26 26 C 1.38177 * 120.14952 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.46942 * 300.00113 * 1 2 3 28 28 H 1.09005 * 109.46643 * 59.99920 * 1 2 3 29 29 H 1.08994 * 109.47462 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46942 * 239.99886 * 2 1 3 31 31 H 1.09005 * 109.46612 * 307.63780 * 3 2 1 32 32 H 1.08997 * 109.47000 * 67.63460 * 3 2 1 33 33 H 1.08996 * 109.47150 * 187.63815 * 3 2 1 34 34 H 1.09005 * 110.70605 * 359.88218 * 6 4 2 35 35 H 1.09004 * 109.97965 * 237.78643 * 6 4 2 36 36 H 1.09005 * 109.46673 * 299.99882 * 11 8 7 37 37 H 1.08994 * 109.47229 * 59.99855 * 11 8 7 38 38 H 1.08997 * 109.47097 * 299.99663 * 12 11 8 39 39 H 1.08994 * 109.47416 * 59.99718 * 12 11 8 40 40 H 0.96997 * 120.00472 * 179.97438 * 16 15 13 41 41 H 1.07998 * 119.86043 * 359.97438 * 22 21 7 42 42 H 1.08007 * 119.88747 * 180.22985 * 23 22 21 43 43 H 1.08002 * 120.08282 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.92495 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7289 -0.1910 2.1493 6 6 1.5292 -2.1715 1.2608 7 7 2.7352 -3.0034 1.2380 8 16 2.7460 -4.6594 1.2504 9 8 1.4971 -5.0222 0.6779 10 8 3.9702 -5.0066 0.6181 11 6 2.7912 -5.0986 3.0098 12 6 2.8050 -6.6216 3.1551 13 6 2.8432 -6.9865 4.6168 14 1 2.8567 -6.2098 5.3670 15 6 2.8608 -8.3119 4.9962 16 7 2.8936 -8.6304 6.2717 17 14 2.8366 -9.6553 3.6985 18 1 4.2298 -10.0028 3.3197 19 1 2.1573 -10.8581 4.2437 20 1 2.1035 -9.1732 2.5004 21 6 3.8736 -2.1965 1.2040 22 6 5.2201 -2.5666 1.1736 23 6 6.2049 -1.6031 1.1360 24 6 5.8672 -0.2619 1.1333 25 6 4.5370 0.1124 1.1680 26 6 3.5461 -0.8499 1.2058 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.5696 1.9942 -0.8139 32 1 1.7926 1.9153 0.9503 33 1 3.1215 1.4454 -0.1366 34 1 0.9155 -2.3710 0.3822 35 1 0.9581 -2.3580 2.1703 36 1 3.6899 -4.6824 3.4652 37 1 1.9105 -4.6937 3.5081 38 1 1.9066 -7.0382 2.6996 39 1 3.6859 -7.0262 2.6568 40 1 2.9057 -9.5628 6.5387 41 1 5.4905 -3.6121 1.1753 42 1 7.2440 -1.8964 1.1090 43 1 6.6409 0.4911 1.1042 44 1 4.2717 1.1592 1.1663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278003466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:25 Heat of formation + Delta-G solvation = -51.192283 kcal Electronic energy + Delta-G solvation = -25831.501401 eV Core-core repulsion = 22261.514063 eV Total energy + Delta-G solvation = -3569.987338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87331 -37.26865 -36.73264 -35.81655 -35.52179 -34.03054 -31.55671 -31.27935 -29.61137 -28.91367 -27.12998 -26.06100 -23.48491 -22.85415 -21.76137 -21.17721 -20.16506 -19.06259 -17.87032 -17.10594 -16.50973 -16.24288 -15.91412 -15.42239 -15.17809 -14.88838 -14.48534 -14.33748 -14.05282 -13.76066 -13.38585 -13.29930 -12.87505 -12.77789 -12.69600 -12.46282 -12.38289 -12.10064 -11.97115 -11.91223 -11.79789 -11.69959 -11.32771 -11.31004 -11.19336 -11.05704 -10.92237 -10.56602 -10.50808 -10.48981 -10.17426 -9.71188 -9.42792 -8.82812 -8.70627 -7.90515 -6.20618 -4.22627 0.35433 1.33724 1.40722 2.61819 3.23275 3.30795 3.34266 3.69187 4.00100 4.08217 4.14470 4.31770 4.44898 4.55030 4.72026 4.84602 4.96479 5.04597 5.10081 5.16376 5.17651 5.27187 5.36640 5.39167 5.40380 5.46342 5.49685 5.56278 5.61007 5.64274 5.76152 5.82451 5.91719 6.04536 6.10082 6.15614 6.17637 6.28352 6.41945 6.54030 6.61103 6.72494 6.85136 7.02088 7.48559 8.31702 8.80113 9.38335 10.91641 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.003724 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.514256 B = 7517.156707 C = 8181.231033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 C -0.152 4.152 4 C -0.044 4.044 5 H 0.096 0.904 6 C 0.114 3.886 7 N -0.942 5.942 8 S 2.584 3.416 9 O -0.951 6.951 10 O -0.948 6.948 11 C -0.575 4.575 12 C -0.006 4.006 13 C -0.521 4.521 14 H 0.079 0.921 15 C 0.073 3.927 16 N -0.894 5.894 17 Si 0.869 3.131 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.262 1.262 21 C 0.171 3.829 22 C -0.153 4.153 23 C -0.085 4.085 24 C -0.152 4.152 25 C -0.079 4.079 26 C -0.131 4.131 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.267 0.733 41 H 0.145 0.855 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 21.105 -11.561 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 C -0.209 4.209 4 C -0.063 4.063 5 H 0.115 0.885 6 C -0.010 4.010 7 N -0.763 5.763 8 S 2.685 3.315 9 O -0.942 6.942 10 O -0.939 6.939 11 C -0.709 4.709 12 C -0.045 4.045 13 C -0.560 4.560 14 H 0.097 0.903 15 C -0.130 4.130 16 N -0.531 5.531 17 Si 0.695 3.305 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.187 1.187 21 C 0.074 3.926 22 C -0.174 4.174 23 C -0.104 4.104 24 C -0.171 4.171 25 C -0.098 4.098 26 C -0.135 4.135 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.163 0.837 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.067 20.257 -12.249 23.673 hybrid contribution -0.012 -0.677 0.181 0.701 sum -0.079 19.580 -12.068 23.001 Atomic orbital electron populations 1.21958 0.94766 1.02322 1.02060 1.21150 0.95746 0.96384 0.97229 1.21999 1.01756 0.95427 1.01763 1.20773 0.91041 0.94905 0.99615 0.88549 1.22089 0.86158 0.89280 1.03518 1.56563 1.10609 1.24765 1.84327 1.06124 0.74505 0.71130 0.79787 1.93564 1.44072 1.80133 1.76394 1.93542 1.45644 1.80555 1.74151 1.30294 1.11331 1.09493 1.19799 1.19435 0.97986 0.85872 1.01249 1.20810 1.52537 0.93545 0.89076 0.90330 1.24974 0.94055 0.98603 0.95363 1.69872 1.49699 1.18517 1.15042 0.86936 0.79231 0.81884 0.82481 1.19581 1.20638 1.18653 1.18073 0.87110 0.90276 0.97163 1.21096 0.89496 1.02024 1.04830 1.20871 0.98934 0.92475 0.98125 1.20989 0.95775 0.96102 1.04253 1.20485 0.91655 0.98441 0.99199 1.20020 0.94776 0.92297 1.06456 0.92332 0.92421 0.92080 0.90807 0.92669 0.92540 0.91812 0.89099 0.89915 0.85273 0.85372 0.94851 0.95234 0.92291 0.83732 0.85427 0.85887 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.93 37.16 0.33 -0.79 16 2 C -0.09 -0.73 2.35 -90.62 -0.21 -0.94 16 3 C -0.15 -1.07 8.48 37.16 0.32 -0.75 16 4 C -0.04 -0.43 2.64 -91.12 -0.24 -0.68 16 5 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 6 C 0.11 1.33 6.15 -3.63 -0.02 1.31 16 7 N -0.94 -13.77 3.40 -58.11 -0.20 -13.96 16 8 S 2.58 45.63 5.56 -107.50 -0.60 45.03 16 9 O -0.95 -18.73 17.56 -57.54 -1.01 -19.74 16 10 O -0.95 -18.56 15.25 -57.54 -0.88 -19.44 16 11 C -0.58 -10.69 6.12 37.16 0.23 -10.47 16 12 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 13 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 14 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 15 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 17 Si 0.87 21.30 27.47 -169.99 -4.67 16.63 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 21 C 0.17 2.44 6.59 -83.67 -0.55 1.89 16 22 C -0.15 -2.19 9.37 -39.20 -0.37 -2.55 16 23 C -0.09 -0.99 10.02 -39.71 -0.40 -1.39 16 24 C -0.15 -1.52 10.06 -39.56 -0.40 -1.92 16 25 C -0.08 -0.80 8.72 -39.61 -0.35 -1.14 16 26 C -0.13 -1.54 5.47 -104.26 -0.57 -2.11 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 6.46 -51.93 -0.34 0.14 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.35 8.13 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 33 H 0.06 0.46 5.34 -51.93 -0.28 0.18 16 34 H 0.09 1.03 6.35 -51.93 -0.33 0.70 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.13 2.23 8.14 -51.92 -0.42 1.81 16 37 H 0.13 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 39 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.15 2.23 6.11 -52.49 -0.32 1.91 16 42 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.13 0.96 6.24 -52.49 -0.33 0.63 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -33.51 358.97 -10.54 -44.04 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.59 Total: 0.69 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: -2.78 Total: -32.60 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.58 Total: -40.04 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -1.89 Total: -39.17 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 45.63 SS G_CDS: -0.60 Total: 45.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.51 -10.54 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278003466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.148 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds