Wall clock time and date at job start Tue Mar 31 2020 14:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47662 * 2 1 4 4 C 1.53006 * 109.47118 * 120.00314 * 2 1 3 5 5 H 1.08997 * 110.46718 * 297.07017 * 4 2 1 6 6 C 1.53757 * 109.87848 * 59.83103 * 4 2 1 7 7 N 1.46534 * 105.18273 * 119.01869 * 6 4 2 8 8 S 1.65604 * 124.95535 * 179.53901 * 7 6 4 9 9 O 1.42097 * 104.27491 * 26.07603 * 8 7 6 10 10 O 1.42097 * 104.27454 * 153.92854 * 8 7 6 11 11 C 1.81396 * 104.45139 * 270.00601 * 8 7 6 12 12 C 1.52997 * 109.47074 * 180.02562 * 11 8 7 13 13 C 1.50705 * 109.46874 * 179.97438 * 12 11 8 14 14 H 1.07993 * 120.00087 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99625 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99986 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00057 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47119 * 90.00483 * 17 15 13 19 19 H 1.48511 * 109.46932 * 210.00013 * 17 15 13 20 20 H 1.48500 * 109.47483 * 329.99973 * 17 15 13 21 21 C 1.39573 * 110.08643 * 359.52454 * 7 6 4 22 22 C 1.39672 * 129.31725 * 180.02562 * 21 7 6 23 23 C 1.37829 * 120.28076 * 179.70141 * 22 21 7 24 24 C 1.38302 * 120.23143 * 0.25654 * 23 22 21 25 25 C 1.38234 * 119.83298 * 359.97438 * 24 23 22 26 26 C 1.38177 * 120.14952 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.46942 * 300.00113 * 1 2 3 28 28 H 1.09005 * 109.46643 * 59.99920 * 1 2 3 29 29 H 1.08994 * 109.47462 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46942 * 239.99886 * 2 1 3 31 31 H 1.09005 * 109.46612 * 307.63780 * 3 2 1 32 32 H 1.08997 * 109.47000 * 67.63460 * 3 2 1 33 33 H 1.08996 * 109.47150 * 187.63815 * 3 2 1 34 34 H 1.09005 * 110.70605 * 359.88218 * 6 4 2 35 35 H 1.09004 * 109.97965 * 237.78643 * 6 4 2 36 36 H 1.09005 * 109.46673 * 299.99882 * 11 8 7 37 37 H 1.08994 * 109.47229 * 59.99855 * 11 8 7 38 38 H 1.08997 * 109.47097 * 299.99663 * 12 11 8 39 39 H 1.08994 * 109.47416 * 59.99718 * 12 11 8 40 40 H 0.96997 * 120.00472 * 179.97438 * 16 15 13 41 41 H 1.07998 * 119.86043 * 359.97438 * 22 21 7 42 42 H 1.08007 * 119.88747 * 180.22985 * 23 22 21 43 43 H 1.08002 * 120.08282 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.92495 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7289 -0.1910 2.1493 6 6 1.5292 -2.1715 1.2608 7 7 2.7352 -3.0034 1.2380 8 16 2.7460 -4.6594 1.2504 9 8 1.4971 -5.0222 0.6779 10 8 3.9702 -5.0066 0.6181 11 6 2.7912 -5.0986 3.0098 12 6 2.8050 -6.6216 3.1551 13 6 2.8432 -6.9865 4.6168 14 1 2.8567 -6.2098 5.3670 15 6 2.8608 -8.3119 4.9962 16 7 2.8936 -8.6304 6.2717 17 14 2.8366 -9.6553 3.6985 18 1 4.2298 -10.0028 3.3197 19 1 2.1573 -10.8581 4.2437 20 1 2.1035 -9.1732 2.5004 21 6 3.8736 -2.1965 1.2040 22 6 5.2201 -2.5666 1.1736 23 6 6.2049 -1.6031 1.1360 24 6 5.8672 -0.2619 1.1333 25 6 4.5370 0.1124 1.1680 26 6 3.5461 -0.8499 1.2058 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.5696 1.9942 -0.8139 32 1 1.7926 1.9153 0.9503 33 1 3.1215 1.4454 -0.1366 34 1 0.9155 -2.3710 0.3822 35 1 0.9581 -2.3580 2.1703 36 1 3.6899 -4.6824 3.4652 37 1 1.9105 -4.6937 3.5081 38 1 1.9066 -7.0382 2.6996 39 1 3.6859 -7.0262 2.6568 40 1 2.9057 -9.5628 6.5387 41 1 5.4905 -3.6121 1.1753 42 1 7.2440 -1.8964 1.1090 43 1 6.6409 0.4911 1.1042 44 1 4.2717 1.1592 1.1663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278003466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:24 Heat of formation + Delta-G solvation = -72.009022 kcal Electronic energy + Delta-G solvation = -25832.404082 eV Core-core repulsion = 22261.514063 eV Total energy + Delta-G solvation = -3570.890019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76799 -38.55723 -37.75354 -37.29270 -36.38555 -35.97951 -33.56323 -32.11488 -30.52838 -29.73957 -27.98706 -27.71567 -24.33307 -23.95936 -22.97765 -22.58267 -20.88224 -20.33881 -19.47797 -18.70820 -17.68355 -17.41870 -16.99760 -16.66899 -16.47694 -16.15323 -15.75434 -15.43243 -15.26794 -14.92004 -14.84870 -14.19448 -14.04369 -13.88616 -13.80758 -13.63181 -13.45289 -13.24097 -13.16592 -13.15475 -13.08162 -13.05240 -12.84119 -12.40304 -12.31720 -12.09749 -12.04142 -11.82447 -11.72771 -11.60478 -11.45494 -11.27154 -11.16848 -10.88328 -9.70790 -8.88221 -8.40219 -6.47005 -1.06006 0.45560 0.48510 1.29675 1.31288 1.35138 1.41282 2.26207 2.52871 2.83155 2.87167 2.93257 3.20039 3.53937 3.75832 3.82398 3.89119 3.96190 4.12254 4.18198 4.32756 4.38021 4.45436 4.47538 4.54238 4.61352 4.63494 4.76975 4.87496 4.91281 4.95626 4.95840 4.98162 5.09871 5.18204 5.24357 5.32321 5.37743 5.40906 5.47021 5.53306 5.56376 5.64694 5.69997 6.11773 6.13960 6.58544 7.17416 8.75316 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.003724 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.514256 B = 7517.156707 C = 8181.231033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 C -0.150 4.150 4 C -0.038 4.038 5 H 0.118 0.882 6 C 0.098 3.902 7 N -0.940 5.940 8 S 2.613 3.387 9 O -0.972 6.972 10 O -0.971 6.971 11 C -0.580 4.580 12 C -0.014 4.014 13 C -0.530 4.530 14 H 0.049 0.951 15 C 0.016 3.984 16 N -0.937 5.937 17 Si 0.925 3.075 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.250 1.250 21 C 0.136 3.864 22 C -0.182 4.182 23 C -0.093 4.093 24 C -0.143 4.143 25 C -0.076 4.076 26 C -0.129 4.129 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.035 0.965 39 H 0.033 0.967 40 H 0.271 0.729 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.157 0.843 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 23.677 -12.857 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 C -0.207 4.207 4 C -0.057 4.057 5 H 0.135 0.865 6 C -0.025 4.025 7 N -0.764 5.764 8 S 2.713 3.287 9 O -0.963 6.963 10 O -0.961 6.961 11 C -0.712 4.712 12 C -0.054 4.054 13 C -0.569 4.569 14 H 0.067 0.933 15 C -0.183 4.183 16 N -0.577 5.577 17 Si 0.747 3.253 18 H -0.184 1.184 19 H -0.196 1.196 20 H -0.173 1.173 21 C 0.040 3.960 22 C -0.204 4.204 23 C -0.112 4.112 24 C -0.162 4.162 25 C -0.094 4.094 26 C -0.134 4.134 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.163 0.837 43 H 0.174 0.826 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.098 22.828 -13.540 26.542 hybrid contribution 0.048 -1.301 0.609 1.437 sum -0.050 21.527 -12.931 25.112 Atomic orbital electron populations 1.21955 0.93925 1.02118 1.03024 1.21124 0.96435 0.97077 0.95622 1.21982 1.01691 0.94224 1.02780 1.20852 0.89815 0.93818 1.01252 0.86462 1.22474 0.85405 0.90223 1.04432 1.56164 1.12078 1.23679 1.84496 1.04976 0.73408 0.71760 0.78556 1.93528 1.44946 1.81360 1.76449 1.93512 1.46545 1.81804 1.74279 1.30263 1.12551 1.06355 1.22066 1.19380 0.98098 0.89444 0.98443 1.21104 1.51817 0.93079 0.90872 0.93300 1.25858 0.93797 1.01215 0.97423 1.69997 1.51262 1.19324 1.17102 0.86034 0.80018 0.79076 0.80186 1.18446 1.19617 1.17317 1.18341 0.86809 0.91382 0.99495 1.21162 0.90575 1.01709 1.06926 1.21156 0.99275 0.92965 0.97770 1.21417 0.96775 0.95952 1.02030 1.20898 0.91271 0.99628 0.97649 1.20326 0.96136 0.91390 1.05535 0.91113 0.91731 0.92900 0.92631 0.91953 0.91314 0.91848 0.89087 0.88359 0.84529 0.83886 0.94628 0.94907 0.91968 0.86026 0.83724 0.82570 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.93 71.98 0.64 -1.25 16 2 C -0.08 -1.22 2.35 -10.79 -0.03 -1.25 16 3 C -0.15 -1.58 8.48 71.98 0.61 -0.97 16 4 C -0.04 -0.67 2.64 -11.12 -0.03 -0.70 16 5 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 6 C 0.10 2.19 6.15 86.63 0.53 2.72 16 7 N -0.94 -27.31 3.40 -337.77 -1.15 -28.45 16 8 S 2.61 93.19 5.56 -56.49 -0.31 92.88 16 9 O -0.97 -38.31 17.56 -127.65 -2.24 -40.56 16 10 O -0.97 -38.90 15.25 -127.65 -1.95 -40.84 16 11 C -0.58 -21.86 6.12 71.98 0.44 -21.42 16 12 C -0.01 -0.69 4.05 29.85 0.12 -0.57 16 13 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 14 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 15 C 0.02 0.93 5.47 84.66 0.46 1.40 16 16 N -0.94 -57.67 13.96 21.45 0.30 -57.37 16 17 Si 0.92 43.82 27.47 68.60 1.88 45.70 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 21 C 0.14 3.82 6.59 38.34 0.25 4.07 16 22 C -0.18 -5.24 9.37 22.52 0.21 -5.03 16 23 C -0.09 -2.03 10.02 22.19 0.22 -1.81 16 24 C -0.14 -2.41 10.06 22.28 0.22 -2.18 16 25 C -0.08 -1.28 8.72 22.25 0.19 -1.09 16 26 C -0.13 -2.77 5.47 -19.63 -0.11 -2.88 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.05 0.74 6.46 -2.39 -0.02 0.72 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.58 8.13 -2.38 -0.02 0.57 16 32 H 0.07 0.58 8.13 -2.39 -0.02 0.56 16 33 H 0.06 0.67 5.34 -2.39 -0.01 0.66 16 34 H 0.09 2.00 6.35 -2.38 -0.02 1.99 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.14 4.86 8.14 -2.39 -0.02 4.84 16 37 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 38 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 39 H 0.03 1.53 7.57 -2.39 -0.02 1.51 16 40 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.12 3.97 6.11 -2.91 -0.02 3.95 16 42 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 44 H 0.16 1.64 6.24 -2.91 -0.02 1.62 16 Total: -1.00 -73.97 358.97 1.47 -72.50 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.93 Total: 17.04 kcal Atomic # 6 Polarization: -64.90 SS G_CDS: 4.00 Total: -60.90 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -0.85 Total: -85.82 kcal Atomic # 8 Polarization: -77.21 SS G_CDS: -4.19 Total: -81.40 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 16 Polarization: 93.19 SS G_CDS: -0.31 Total: 92.88 kcal Total: -73.97 1.47 -72.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278003466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.492 kcal (2) G-P(sol) polarization free energy of solvation -73.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds