Wall clock time and date at job start Tue Mar 31 2020 14:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 C 1.53001 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46731 * 55.00163 * 4 3 2 6 6 N 1.46496 * 109.47017 * 295.00322 * 4 3 2 7 7 C 1.34773 * 120.00226 * 85.00086 * 6 4 3 8 8 O 1.21281 * 120.00130 * 359.97438 * 7 6 4 9 9 C 1.50706 * 120.00146 * 179.97438 * 7 6 4 10 10 S 1.81001 * 109.47023 * 179.97438 * 9 7 6 11 11 C 1.76197 * 99.99746 * 180.02562 * 10 9 7 12 12 H 1.07994 * 120.00415 * 359.97438 * 11 10 9 13 13 C 1.38807 * 119.99946 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99650 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00042 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47200 * 89.99569 * 15 13 11 17 17 H 1.48502 * 109.47150 * 209.99731 * 15 13 11 18 18 H 1.48503 * 109.47055 * 329.99704 * 15 13 11 19 19 C 1.52997 * 109.47242 * 174.99869 * 4 3 2 20 20 H 1.09002 * 109.47153 * 175.00232 * 19 4 3 21 21 O 1.42896 * 109.46906 * 55.00515 * 19 4 3 22 22 C 1.50701 * 109.47212 * 295.00231 * 19 4 3 23 23 C 1.38237 * 119.99605 * 84.72864 * 22 19 4 24 24 C 1.38236 * 119.99544 * 179.81222 * 23 22 19 25 25 C 1.38237 * 120.00196 * 0.39148 * 24 23 22 26 26 C 1.38230 * 119.99861 * 359.86039 * 25 24 23 27 27 C 1.38229 * 120.00169 * 265.00276 * 22 19 4 28 28 H 1.08997 * 109.47495 * 60.00177 * 1 2 3 29 29 H 1.09002 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47080 * 299.99846 * 1 2 3 31 31 H 1.08992 * 109.47225 * 240.00214 * 2 1 3 32 32 H 1.09002 * 109.46829 * 120.00068 * 2 1 3 33 33 H 1.09001 * 109.47061 * 60.00142 * 3 2 1 34 34 H 1.08997 * 109.46835 * 300.00228 * 3 2 1 35 35 H 0.96996 * 120.00110 * 264.99221 * 6 4 3 36 36 H 1.08994 * 109.46841 * 299.99917 * 9 7 6 37 37 H 1.09000 * 109.46831 * 60.00138 * 9 7 6 38 38 H 0.97000 * 119.99169 * 180.02562 * 14 13 11 39 39 H 0.96708 * 114.00101 * 299.99268 * 21 19 4 40 40 H 1.08002 * 120.00277 * 359.97438 * 23 22 19 41 41 H 1.08001 * 119.99795 * 180.23017 * 24 23 22 42 42 H 1.08002 * 120.00265 * 179.83609 * 25 24 23 43 43 H 1.08000 * 120.00485 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.99905 * 359.97433 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8410 6 7 4.0578 0.8590 1.2527 7 6 4.1865 -0.4776 1.3680 8 8 3.8981 -1.1974 0.4355 9 6 4.6889 -1.0779 2.6559 10 16 4.7491 -2.8800 2.4984 11 6 5.3516 -3.3069 4.0982 12 1 5.5615 -2.5322 4.8206 13 6 5.5576 -4.6391 4.4295 14 7 5.3022 -5.5834 3.5487 15 14 6.1957 -5.0917 6.1257 16 1 5.0494 -5.2976 7.0471 17 1 6.9910 -6.3427 6.0378 18 1 7.0539 -3.9947 6.6407 19 6 4.0800 2.8795 -0.1251 20 1 5.1663 2.8887 -0.0356 21 8 3.5099 3.6798 0.9124 22 6 3.6819 3.4383 -1.4669 23 6 2.4313 4.0022 -1.6372 24 6 2.0675 4.5182 -2.8669 25 6 2.9512 4.4631 -3.9285 26 6 4.1998 3.8946 -3.7595 27 6 4.5650 3.3819 -2.5287 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 4.2882 1.4346 1.9986 36 1 5.6881 -0.6978 2.8684 37 1 4.0163 -0.8069 3.4697 38 1 5.4458 -6.5143 3.7804 39 1 2.5437 3.7174 0.8942 40 1 1.7394 4.0419 -0.8088 41 1 1.0918 4.9621 -2.9990 42 1 2.6660 4.8639 -4.8900 43 1 4.8902 3.8511 -4.5889 44 1 5.5406 2.9378 -2.3967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279821663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:05 Heat of formation + Delta-G solvation = -76.504552 kcal Electronic energy + Delta-G solvation = -24894.214337 eV Core-core repulsion = 21323.129377 eV Total energy + Delta-G solvation = -3571.084960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56945 -39.18647 -37.44877 -35.04727 -33.41225 -32.42104 -32.05072 -31.20410 -29.98855 -27.99138 -26.49160 -25.46880 -22.95343 -22.94352 -21.37959 -20.67403 -20.21453 -18.03612 -17.85836 -16.63567 -16.43868 -16.09340 -15.81454 -15.30648 -15.22454 -14.79731 -14.43407 -14.25897 -14.06377 -13.86243 -13.68816 -13.31165 -13.20776 -12.98647 -12.64267 -12.54364 -12.18252 -11.92481 -11.83083 -11.53675 -11.39396 -11.11730 -11.05108 -11.00811 -10.92178 -10.75856 -10.46954 -10.29996 -9.79538 -9.34966 -9.20976 -9.14672 -9.05762 -8.73429 -8.22698 -6.48770 -6.21207 -3.91244 0.97911 1.07973 3.01631 3.11121 3.22835 3.27696 3.31412 3.44127 3.71924 4.10828 4.21306 4.36815 4.47239 4.50549 4.68672 4.76688 4.82740 5.03438 5.13626 5.14233 5.15518 5.20909 5.27237 5.40900 5.45287 5.59757 5.61433 5.66484 5.72333 5.77727 5.90173 5.92830 5.94822 6.11938 6.16732 6.19429 6.21286 6.26263 6.38683 6.62036 6.64938 6.68789 7.22082 7.60506 7.76245 8.36037 8.64803 9.24381 10.86192 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.002598 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.788881 B =10774.543552 C =11087.401572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.138 4.138 4 C 0.122 3.878 5 H 0.097 0.903 6 N -0.729 5.729 7 C 0.532 3.468 8 O -0.512 6.512 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.141 3.859 20 H 0.115 0.885 21 O -0.551 6.551 22 C -0.110 4.110 23 C -0.108 4.108 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.107 4.107 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.402 0.598 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.268 0.732 39 H 0.374 0.626 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 22.350 -11.472 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.177 4.177 4 C 0.016 3.984 5 H 0.115 0.885 6 N -0.384 5.384 7 C 0.319 3.681 8 O -0.386 6.386 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.683 4.683 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.081 3.919 20 H 0.132 0.868 21 O -0.358 6.358 22 C -0.111 4.111 23 C -0.126 4.126 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.135 4.135 27 C -0.125 4.125 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.236 0.764 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.223 0.777 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.314 21.019 -12.910 25.462 hybrid contribution 0.261 0.702 2.291 2.410 sum -6.053 21.720 -10.620 24.924 Atomic orbital electron populations 1.21789 0.96612 1.01639 1.00752 1.21551 0.94659 0.95325 1.04016 1.22173 0.94665 0.99030 1.01783 1.21530 0.94482 0.93254 0.89163 0.88525 1.45969 1.69214 1.07188 1.16016 1.20259 0.76833 0.81465 0.89575 1.90708 1.47898 1.59912 1.40094 1.23540 1.03661 1.06105 0.97142 1.85357 1.86329 0.91074 1.20462 1.22874 1.50889 0.95051 0.99520 0.90963 1.24992 0.95125 0.95318 0.98166 1.70021 1.45655 1.00461 1.34196 0.86175 0.78836 0.78054 0.82485 1.20279 1.20763 1.19695 1.21129 0.98963 0.88184 0.83615 0.86756 1.86618 1.25676 1.71589 1.51882 1.20376 0.94934 0.99765 0.96037 1.20886 0.95636 0.98485 0.97638 1.21119 0.99703 0.99789 0.93039 1.21192 0.94130 0.99528 0.98918 1.21164 0.96716 0.98366 0.97280 1.21036 0.99545 0.99233 0.92680 0.93429 0.92666 0.93292 0.91404 0.90934 0.91952 0.90854 0.76385 0.89314 0.89338 0.92212 0.77686 0.86098 0.85940 0.86063 0.85855 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.62 4.54 -26.73 -0.12 -1.75 16 3 C -0.14 -1.45 3.83 -26.73 -0.10 -1.55 16 4 C 0.12 1.38 2.12 -67.93 -0.14 1.23 16 5 H 0.10 1.31 7.58 -51.92 -0.39 0.91 16 6 N -0.73 -9.52 5.01 -53.81 -0.27 -9.79 16 7 C 0.53 9.54 6.42 -10.98 -0.07 9.47 16 8 O -0.51 -10.87 13.00 5.56 0.07 -10.80 16 9 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 10 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 11 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 15 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C 0.14 1.30 3.16 -27.88 -0.09 1.21 16 20 H 0.11 1.07 8.05 -51.93 -0.42 0.65 16 21 O -0.55 -4.96 12.77 -35.23 -0.45 -5.41 16 22 C -0.11 -0.98 4.74 -104.62 -0.50 -1.48 16 23 C -0.11 -0.86 7.34 -39.58 -0.29 -1.15 16 24 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 25 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 26 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 27 C -0.11 -0.94 9.68 -39.58 -0.38 -1.32 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 32 H 0.07 1.22 5.64 -51.93 -0.29 0.93 16 33 H 0.06 0.58 7.00 -51.93 -0.36 0.21 16 34 H 0.07 0.68 5.52 -51.93 -0.29 0.39 16 35 H 0.40 4.49 8.38 -40.82 -0.34 4.15 16 36 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.37 2.47 5.67 45.56 0.26 2.73 16 40 H 0.12 0.74 6.09 -52.49 -0.32 0.42 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -33.87 369.30 -9.60 -43.47 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.92 Total: 6.20 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -2.10 Total: -16.43 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.46 Total: -35.24 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.38 Total: -16.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.87 -9.60 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279821663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.036 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds