Wall clock time and date at job start Tue Mar 31 2020 14:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 C 1.53001 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46731 * 55.00163 * 4 3 2 6 6 N 1.46496 * 109.47017 * 295.00322 * 4 3 2 7 7 C 1.34773 * 120.00226 * 85.00086 * 6 4 3 8 8 O 1.21281 * 120.00130 * 359.97438 * 7 6 4 9 9 C 1.50706 * 120.00146 * 179.97438 * 7 6 4 10 10 S 1.81001 * 109.47023 * 179.97438 * 9 7 6 11 11 C 1.76197 * 99.99746 * 180.02562 * 10 9 7 12 12 H 1.07994 * 120.00415 * 359.97438 * 11 10 9 13 13 C 1.38807 * 119.99946 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99650 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00042 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47200 * 89.99569 * 15 13 11 17 17 H 1.48502 * 109.47150 * 209.99731 * 15 13 11 18 18 H 1.48503 * 109.47055 * 329.99704 * 15 13 11 19 19 C 1.52997 * 109.47242 * 174.99869 * 4 3 2 20 20 H 1.09002 * 109.47153 * 175.00232 * 19 4 3 21 21 O 1.42896 * 109.46906 * 55.00515 * 19 4 3 22 22 C 1.50701 * 109.47212 * 295.00231 * 19 4 3 23 23 C 1.38237 * 119.99605 * 84.72864 * 22 19 4 24 24 C 1.38236 * 119.99544 * 179.81222 * 23 22 19 25 25 C 1.38237 * 120.00196 * 0.39148 * 24 23 22 26 26 C 1.38230 * 119.99861 * 359.86039 * 25 24 23 27 27 C 1.38229 * 120.00169 * 265.00276 * 22 19 4 28 28 H 1.08997 * 109.47495 * 60.00177 * 1 2 3 29 29 H 1.09002 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47080 * 299.99846 * 1 2 3 31 31 H 1.08992 * 109.47225 * 240.00214 * 2 1 3 32 32 H 1.09002 * 109.46829 * 120.00068 * 2 1 3 33 33 H 1.09001 * 109.47061 * 60.00142 * 3 2 1 34 34 H 1.08997 * 109.46835 * 300.00228 * 3 2 1 35 35 H 0.96996 * 120.00110 * 264.99221 * 6 4 3 36 36 H 1.08994 * 109.46841 * 299.99917 * 9 7 6 37 37 H 1.09000 * 109.46831 * 60.00138 * 9 7 6 38 38 H 0.97000 * 119.99169 * 180.02562 * 14 13 11 39 39 H 0.96708 * 114.00101 * 299.99268 * 21 19 4 40 40 H 1.08002 * 120.00277 * 359.97438 * 23 22 19 41 41 H 1.08001 * 119.99795 * 180.23017 * 24 23 22 42 42 H 1.08002 * 120.00265 * 179.83609 * 25 24 23 43 43 H 1.08000 * 120.00485 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.99905 * 359.97433 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8410 6 7 4.0578 0.8590 1.2527 7 6 4.1865 -0.4776 1.3680 8 8 3.8981 -1.1974 0.4355 9 6 4.6889 -1.0779 2.6559 10 16 4.7491 -2.8800 2.4984 11 6 5.3516 -3.3069 4.0982 12 1 5.5615 -2.5322 4.8206 13 6 5.5576 -4.6391 4.4295 14 7 5.3022 -5.5834 3.5487 15 14 6.1957 -5.0917 6.1257 16 1 5.0494 -5.2976 7.0471 17 1 6.9910 -6.3427 6.0378 18 1 7.0539 -3.9947 6.6407 19 6 4.0800 2.8795 -0.1251 20 1 5.1663 2.8887 -0.0356 21 8 3.5099 3.6798 0.9124 22 6 3.6819 3.4383 -1.4669 23 6 2.4313 4.0022 -1.6372 24 6 2.0675 4.5182 -2.8669 25 6 2.9512 4.4631 -3.9285 26 6 4.1998 3.8946 -3.7595 27 6 4.5650 3.3819 -2.5287 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 4.2882 1.4346 1.9986 36 1 5.6881 -0.6978 2.8684 37 1 4.0163 -0.8069 3.4697 38 1 5.4458 -6.5143 3.7804 39 1 2.5437 3.7174 0.8942 40 1 1.7394 4.0419 -0.8088 41 1 1.0918 4.9621 -2.9990 42 1 2.6660 4.8639 -4.8900 43 1 4.8902 3.8511 -4.5889 44 1 5.5406 2.9378 -2.3967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279821663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:04 Heat of formation + Delta-G solvation = -99.395575 kcal Electronic energy + Delta-G solvation = -24895.206967 eV Core-core repulsion = 21323.129377 eV Total energy + Delta-G solvation = -3572.077589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48308 -40.23338 -38.30705 -36.04641 -34.61798 -34.56353 -32.78152 -31.77702 -31.26118 -29.20153 -27.64762 -27.27118 -23.84458 -23.55471 -22.23494 -21.68399 -21.42813 -19.82253 -18.73371 -17.90924 -17.50166 -17.04328 -16.88333 -16.64149 -16.34055 -16.11132 -15.88844 -15.33324 -15.06779 -14.91242 -14.56079 -14.48113 -14.26447 -14.20398 -13.77718 -13.67668 -13.16958 -13.15100 -12.92115 -12.89507 -12.66754 -12.59822 -12.45975 -12.04803 -11.97066 -11.76984 -11.72695 -11.49656 -11.15333 -11.14518 -10.80720 -10.27121 -10.10410 -9.79794 -9.60107 -8.65522 -8.35149 -6.12305 0.37341 0.50163 1.27241 1.41629 1.46735 1.57386 1.66801 2.24573 2.29470 2.84968 2.98921 3.31855 3.41859 3.56188 3.67463 3.85191 4.00734 4.05897 4.08752 4.15150 4.28673 4.30520 4.31154 4.46450 4.48511 4.52016 4.62910 4.67771 4.77516 4.85375 4.96920 4.97342 5.05430 5.15054 5.27318 5.30622 5.41520 5.50618 5.52861 5.57372 5.62201 5.63406 6.09689 6.19458 6.54377 6.64442 7.06353 7.30176 8.73972 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.002598 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.788881 B =10774.543552 C =11087.401572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.128 4.128 4 C 0.123 3.877 5 H 0.072 0.928 6 N -0.706 5.706 7 C 0.536 3.464 8 O -0.551 6.551 9 C -0.131 4.131 10 S -0.145 6.145 11 C -0.547 4.547 12 H 0.081 0.919 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.259 1.259 19 C 0.157 3.843 20 H 0.112 0.888 21 O -0.555 6.555 22 C -0.124 4.124 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.129 4.129 27 C -0.125 4.125 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.415 0.585 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.271 0.729 39 H 0.386 0.614 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.095 25.127 -10.556 28.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.018 3.982 5 H 0.090 0.910 6 N -0.360 5.360 7 C 0.321 3.679 8 O -0.428 6.428 9 C -0.282 4.282 10 S 0.082 5.918 11 C -0.695 4.695 12 H 0.099 0.901 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.819 3.181 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.183 1.183 19 C 0.097 3.903 20 H 0.130 0.870 21 O -0.363 6.363 22 C -0.125 4.125 23 C -0.133 4.133 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.143 4.143 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.252 0.748 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.237 0.763 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.960 23.857 -11.989 27.592 hybrid contribution 0.418 -0.039 1.903 1.949 sum -6.542 23.818 -10.086 26.680 Atomic orbital electron populations 1.21752 0.94835 1.01321 1.02431 1.21462 0.96250 0.96831 1.00933 1.22109 0.93628 0.97106 1.03772 1.21641 0.95273 0.94229 0.87080 0.90994 1.45714 1.67606 1.05448 1.17200 1.19911 0.76786 0.82857 0.88298 1.90707 1.49860 1.61222 1.41054 1.23384 1.05249 1.00577 0.99028 1.85511 1.86679 0.98143 1.21441 1.23209 1.50851 0.95756 0.99659 0.90112 1.26119 0.95112 0.95136 1.02788 1.70184 1.46930 1.00936 1.36717 0.84969 0.78448 0.78012 0.76656 1.19286 1.20252 1.18271 1.20868 0.98786 0.86415 0.84251 0.86990 1.86612 1.26886 1.71182 1.51611 1.20375 0.95733 1.00762 0.95618 1.21158 0.95455 0.98044 0.98600 1.21455 1.00635 0.99391 0.92762 1.21524 0.93860 0.98978 0.99979 1.21415 0.97491 0.98361 0.97416 1.21226 0.99954 0.99823 0.93320 0.91390 0.94096 0.91846 0.94247 0.94416 0.89708 0.88895 0.74810 0.87665 0.87683 0.92009 0.76290 0.84133 0.83784 0.84155 0.84583 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.12 -3.24 4.54 30.60 0.14 -3.10 16 3 C -0.13 -2.47 3.83 30.59 0.12 -2.35 16 4 C 0.12 2.68 2.12 44.99 0.10 2.78 16 5 H 0.07 2.00 7.58 -2.38 -0.02 1.98 16 6 N -0.71 -17.79 5.01 -442.53 -2.22 -20.01 16 7 C 0.54 19.43 6.42 87.66 0.56 19.99 16 8 O -0.55 -24.49 13.00 -3.03 -0.04 -24.53 16 9 C -0.13 -5.24 6.16 71.24 0.44 -4.81 16 10 S -0.14 -8.06 20.57 -56.49 -1.16 -9.23 16 11 C -0.55 -31.48 9.50 67.96 0.65 -30.84 16 12 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 13 C 0.01 0.76 5.49 84.86 0.47 1.22 16 14 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 15 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 19 C 0.16 2.63 3.16 29.85 0.09 2.73 16 20 H 0.11 1.95 8.05 -2.39 -0.02 1.93 16 21 O -0.55 -8.37 12.77 -148.98 -1.90 -10.27 16 22 C -0.12 -2.01 4.74 -19.87 -0.09 -2.10 16 23 C -0.11 -1.51 7.34 22.27 0.16 -1.35 16 24 C -0.12 -1.52 10.05 22.27 0.22 -1.29 16 25 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 26 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 27 C -0.13 -2.11 9.68 22.27 0.22 -1.89 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.29 7.85 -2.39 -0.02 1.27 16 32 H 0.04 1.30 5.64 -2.39 -0.01 1.29 16 33 H 0.08 1.29 7.00 -2.39 -0.02 1.27 16 34 H 0.09 1.48 5.52 -2.39 -0.01 1.47 16 35 H 0.41 8.42 8.38 -92.71 -0.78 7.64 16 36 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 37 H 0.10 3.84 8.14 -2.40 -0.02 3.82 16 38 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.39 3.65 5.67 -74.05 -0.42 3.23 16 40 H 0.14 1.19 6.09 -2.91 -0.02 1.17 16 41 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 44 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -76.53 369.30 1.04 -75.49 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -0.18 Total: 25.20 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 4.23 Total: -26.61 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.93 Total: -76.03 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.94 Total: -34.81 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.23 kcal Total: -76.53 1.04 -75.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279821663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.904 kcal (2) G-P(sol) polarization free energy of solvation -76.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds