Wall clock time and date at job start Tue Mar 31 2020 14:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47046 * 2 1 4 4 C 1.53000 * 109.47536 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46762 * 305.00296 * 4 3 2 6 6 N 1.46506 * 109.46710 * 64.99716 * 4 3 2 7 7 C 1.34773 * 119.99968 * 275.00042 * 6 4 3 8 8 O 1.21283 * 120.00360 * 359.73034 * 7 6 4 9 9 C 1.50706 * 120.00081 * 180.02562 * 7 6 4 10 10 S 1.80996 * 109.47276 * 179.72626 * 9 7 6 11 11 C 1.76195 * 99.99998 * 179.97438 * 10 9 7 12 12 H 1.08007 * 120.00003 * 0.02562 * 11 10 9 13 13 C 1.38797 * 120.00413 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99814 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00484 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46882 * 59.99910 * 15 13 11 17 17 H 1.48501 * 109.47377 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47309 * 300.00007 * 15 13 11 19 19 C 1.52995 * 109.47680 * 184.99668 * 4 3 2 20 20 H 1.09006 * 109.46509 * 65.00046 * 19 4 3 21 21 O 1.42898 * 109.47017 * 305.00414 * 19 4 3 22 22 C 1.50698 * 109.47509 * 184.99750 * 19 4 3 23 23 C 1.38237 * 119.99469 * 84.72867 * 22 19 4 24 24 C 1.38244 * 119.99581 * 179.81492 * 23 22 19 25 25 C 1.38229 * 119.99896 * 0.39536 * 24 23 22 26 26 C 1.38235 * 120.00041 * 359.85801 * 25 24 23 27 27 C 1.38228 * 120.00385 * 359.95701 * 26 25 24 28 28 H 1.09003 * 109.46649 * 60.00209 * 1 2 3 29 29 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47338 * 300.00183 * 1 2 3 31 31 H 1.08997 * 109.47338 * 239.99817 * 2 1 3 32 32 H 1.08996 * 109.46828 * 119.99452 * 2 1 3 33 33 H 1.08997 * 109.47201 * 59.99734 * 3 2 1 34 34 H 1.08999 * 109.47444 * 299.99890 * 3 2 1 35 35 H 0.96998 * 119.99507 * 95.00898 * 6 4 3 36 36 H 1.09001 * 109.46564 * 299.73030 * 9 7 6 37 37 H 1.08998 * 109.47012 * 59.72084 * 9 7 6 38 38 H 0.97001 * 120.00629 * 180.02562 * 14 13 11 39 39 H 0.96695 * 113.99974 * 299.99089 * 21 19 4 40 40 H 1.07995 * 120.00445 * 359.97438 * 23 22 19 41 41 H 1.07992 * 119.99730 * 180.23058 * 24 23 22 42 42 H 1.07996 * 120.00183 * 179.83852 * 25 24 23 43 43 H 1.08009 * 119.99995 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00435 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 7 4.0588 0.8586 -1.2509 7 6 4.1877 -0.4780 -1.3657 8 8 3.9036 -1.1972 -0.4314 9 6 4.6910 -1.0787 -2.6530 10 16 4.7595 -2.8802 -2.4919 11 6 5.3619 -3.3077 -4.0916 12 1 5.5674 -2.5334 -4.8160 13 6 5.5724 -4.6395 -4.4209 14 7 5.3214 -5.5833 -3.5383 15 14 6.2103 -5.0928 -6.1170 16 1 7.5342 -4.4560 -6.3344 17 1 6.3490 -6.5680 -6.2158 18 1 5.2556 -4.6147 -7.1491 19 6 4.0800 2.8796 0.1263 20 1 3.7911 3.2840 1.0965 21 8 3.5105 3.6796 -0.9119 22 6 5.5819 2.8922 0.0038 23 6 6.1731 2.9265 -1.2453 24 6 7.5509 2.9420 -1.3576 25 6 8.3373 2.9149 -0.2212 26 6 7.7460 2.8753 1.0277 27 6 6.3684 2.8637 1.1402 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 4.2899 1.4341 -1.9968 36 1 4.0165 -0.8119 -3.4666 37 1 5.6884 -0.6949 -2.8674 38 1 5.4689 -6.5140 -3.7681 39 1 3.7265 3.3773 -1.8046 40 1 5.5587 2.9438 -2.1333 41 1 8.0127 2.9725 -2.3333 42 1 9.4137 2.9243 -0.3089 43 1 8.3605 2.8537 1.9157 44 1 5.9065 2.8324 2.1159 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279821689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:10 Heat of formation + Delta-G solvation = -75.827640 kcal Electronic energy + Delta-G solvation = -25300.712161 eV Core-core repulsion = 21729.656554 eV Total energy + Delta-G solvation = -3571.055607 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55472 -39.04053 -37.40305 -35.09506 -33.40361 -32.43613 -31.87389 -31.02408 -30.10510 -28.26350 -26.12202 -25.48698 -22.92614 -22.75313 -21.20987 -20.88292 -20.23957 -18.18127 -17.69987 -16.76519 -16.58338 -15.96175 -15.50449 -15.39729 -14.90375 -14.81187 -14.46741 -14.14844 -14.07904 -13.77005 -13.56282 -13.44022 -13.03659 -12.94667 -12.69024 -12.61276 -12.09391 -11.90276 -11.69842 -11.48480 -11.32732 -11.19215 -11.05464 -11.04741 -10.85912 -10.77345 -10.42371 -10.21183 -9.82290 -9.36517 -9.12672 -9.06694 -8.94635 -8.79217 -8.24734 -6.50213 -6.22334 -3.92681 1.12865 1.21813 2.99666 3.10165 3.22499 3.26456 3.29361 3.53918 3.67917 4.09516 4.19826 4.25840 4.58470 4.61750 4.77760 4.91951 5.04994 5.10218 5.12397 5.13279 5.18137 5.29504 5.33886 5.41035 5.52785 5.62117 5.71918 5.76126 5.80293 5.82777 5.87870 6.00265 6.03623 6.12199 6.24922 6.27694 6.30435 6.34163 6.43007 6.62033 6.68496 6.78889 7.20094 7.58165 7.64206 8.34010 8.61190 9.22973 10.84998 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.003857 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.793677 B = 7257.717444 C = 9010.565419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.121 4.121 4 C 0.120 3.880 5 H 0.097 0.903 6 N -0.731 5.731 7 C 0.536 3.464 8 O -0.508 6.508 9 C -0.154 4.154 10 S -0.056 6.056 11 C -0.537 4.537 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.868 5.868 15 Si 0.917 3.083 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.142 3.858 20 H 0.119 0.881 21 O -0.548 6.548 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.110 4.110 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.389 0.611 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.269 0.731 39 H 0.371 0.629 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.608 20.591 6.917 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.159 4.159 4 C 0.014 3.986 5 H 0.115 0.885 6 N -0.387 5.387 7 C 0.322 3.678 8 O -0.382 6.382 9 C -0.305 4.305 10 S 0.170 5.830 11 C -0.685 4.685 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 C 0.082 3.918 20 H 0.137 0.863 21 O -0.353 6.353 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.134 4.134 27 C -0.128 4.128 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.224 0.776 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.219 0.781 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.331 19.509 9.040 21.543 hybrid contribution 1.230 0.412 -3.027 3.293 sum -0.101 19.921 6.014 20.809 Atomic orbital electron populations 1.21778 0.96628 1.01477 1.00855 1.21606 0.94720 0.95736 1.03841 1.21926 0.93670 0.97939 1.02404 1.21665 0.94607 0.93140 0.89162 0.88466 1.46019 1.69560 1.07311 1.15823 1.20184 0.76705 0.81337 0.89580 1.90710 1.47768 1.59789 1.39949 1.23538 1.03486 1.06321 0.97142 1.85375 1.86296 0.90966 1.20348 1.22826 1.51124 0.95067 0.99464 0.91067 1.24972 0.95077 0.95289 0.98123 1.70003 1.45480 1.00552 1.34266 0.86248 0.79315 0.77490 0.82592 1.19961 1.20795 1.19933 1.21202 0.87634 0.90100 0.92843 0.86318 1.86641 1.75665 1.55721 1.17301 1.20423 0.96065 1.00714 0.94008 1.20776 0.95057 1.00500 0.96381 1.21128 0.93640 0.99498 0.98831 1.21185 0.99983 0.99879 0.92668 1.21143 0.94769 0.99803 0.97697 1.20944 0.93849 1.00068 0.97907 0.93293 0.92784 0.93391 0.91100 0.91502 0.91495 0.91398 0.77629 0.89442 0.89461 0.92133 0.78119 0.86653 0.85844 0.86038 0.85968 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.68 4.54 -26.73 -0.12 -1.81 16 3 C -0.12 -1.34 4.61 -26.73 -0.12 -1.46 16 4 C 0.12 1.34 2.15 -67.93 -0.15 1.19 16 5 H 0.10 1.28 7.57 -51.93 -0.39 0.89 16 6 N -0.73 -9.06 4.22 -53.80 -0.23 -9.29 16 7 C 0.54 9.42 6.41 -10.98 -0.07 9.35 16 8 O -0.51 -10.72 13.02 5.56 0.07 -10.65 16 9 C -0.15 -3.03 6.16 36.01 0.22 -2.80 16 10 S -0.06 -1.50 20.57 -107.50 -2.21 -3.72 16 11 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 12 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 13 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16 15 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.14 1.30 3.12 -27.89 -0.09 1.21 16 20 H 0.12 0.96 8.05 -51.93 -0.42 0.55 16 21 O -0.55 -4.94 12.36 -35.23 -0.44 -5.38 16 22 C -0.11 -1.11 4.78 -104.62 -0.50 -1.61 16 23 C -0.11 -1.05 8.17 -39.58 -0.32 -1.38 16 24 C -0.11 -1.11 10.05 -39.58 -0.40 -1.51 16 25 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 26 C -0.12 -1.13 10.05 -39.59 -0.40 -1.52 16 27 C -0.11 -1.08 9.68 -39.59 -0.38 -1.47 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.19 5.65 -51.93 -0.29 0.90 16 32 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.74 7.73 -51.93 -0.40 0.33 16 35 H 0.39 3.81 5.61 -40.82 -0.23 3.58 16 36 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 37 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.37 2.49 6.26 45.56 0.29 2.78 16 40 H 0.12 0.86 5.62 -52.49 -0.30 0.56 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -34.06 370.46 -9.59 -43.65 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.92 Total: 6.49 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -2.16 Total: -17.65 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.51 Total: -34.59 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.36 Total: -16.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.06 -9.59 -43.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279821689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.174 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds