Wall clock time and date at job start Tue Mar 31 2020 14:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47046 * 2 1 4 4 C 1.53000 * 109.47536 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46762 * 305.00296 * 4 3 2 6 6 N 1.46506 * 109.46710 * 64.99716 * 4 3 2 7 7 C 1.34773 * 119.99968 * 275.00042 * 6 4 3 8 8 O 1.21283 * 120.00360 * 359.73034 * 7 6 4 9 9 C 1.50706 * 120.00081 * 180.02562 * 7 6 4 10 10 S 1.80996 * 109.47276 * 179.72626 * 9 7 6 11 11 C 1.76195 * 99.99998 * 179.97438 * 10 9 7 12 12 H 1.08007 * 120.00003 * 0.02562 * 11 10 9 13 13 C 1.38797 * 120.00413 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99814 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00484 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46882 * 59.99910 * 15 13 11 17 17 H 1.48501 * 109.47377 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47309 * 300.00007 * 15 13 11 19 19 C 1.52995 * 109.47680 * 184.99668 * 4 3 2 20 20 H 1.09006 * 109.46509 * 65.00046 * 19 4 3 21 21 O 1.42898 * 109.47017 * 305.00414 * 19 4 3 22 22 C 1.50698 * 109.47509 * 184.99750 * 19 4 3 23 23 C 1.38237 * 119.99469 * 84.72867 * 22 19 4 24 24 C 1.38244 * 119.99581 * 179.81492 * 23 22 19 25 25 C 1.38229 * 119.99896 * 0.39536 * 24 23 22 26 26 C 1.38235 * 120.00041 * 359.85801 * 25 24 23 27 27 C 1.38228 * 120.00385 * 359.95701 * 26 25 24 28 28 H 1.09003 * 109.46649 * 60.00209 * 1 2 3 29 29 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47338 * 300.00183 * 1 2 3 31 31 H 1.08997 * 109.47338 * 239.99817 * 2 1 3 32 32 H 1.08996 * 109.46828 * 119.99452 * 2 1 3 33 33 H 1.08997 * 109.47201 * 59.99734 * 3 2 1 34 34 H 1.08999 * 109.47444 * 299.99890 * 3 2 1 35 35 H 0.96998 * 119.99507 * 95.00898 * 6 4 3 36 36 H 1.09001 * 109.46564 * 299.73030 * 9 7 6 37 37 H 1.08998 * 109.47012 * 59.72084 * 9 7 6 38 38 H 0.97001 * 120.00629 * 180.02562 * 14 13 11 39 39 H 0.96695 * 113.99974 * 299.99089 * 21 19 4 40 40 H 1.07995 * 120.00445 * 359.97438 * 23 22 19 41 41 H 1.07992 * 119.99730 * 180.23058 * 24 23 22 42 42 H 1.07996 * 120.00183 * 179.83852 * 25 24 23 43 43 H 1.08009 * 119.99995 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00435 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 7 4.0588 0.8586 -1.2509 7 6 4.1877 -0.4780 -1.3657 8 8 3.9036 -1.1972 -0.4314 9 6 4.6910 -1.0787 -2.6530 10 16 4.7595 -2.8802 -2.4919 11 6 5.3619 -3.3077 -4.0916 12 1 5.5674 -2.5334 -4.8160 13 6 5.5724 -4.6395 -4.4209 14 7 5.3214 -5.5833 -3.5383 15 14 6.2103 -5.0928 -6.1170 16 1 7.5342 -4.4560 -6.3344 17 1 6.3490 -6.5680 -6.2158 18 1 5.2556 -4.6147 -7.1491 19 6 4.0800 2.8796 0.1263 20 1 3.7911 3.2840 1.0965 21 8 3.5105 3.6796 -0.9119 22 6 5.5819 2.8922 0.0038 23 6 6.1731 2.9265 -1.2453 24 6 7.5509 2.9420 -1.3576 25 6 8.3373 2.9149 -0.2212 26 6 7.7460 2.8753 1.0277 27 6 6.3684 2.8637 1.1402 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 4.2899 1.4341 -1.9968 36 1 4.0165 -0.8119 -3.4666 37 1 5.6884 -0.6949 -2.8674 38 1 5.4689 -6.5140 -3.7681 39 1 3.7265 3.3773 -1.8046 40 1 5.5587 2.9438 -2.1333 41 1 8.0127 2.9725 -2.3333 42 1 9.4137 2.9243 -0.3089 43 1 8.3605 2.8537 1.9157 44 1 5.9065 2.8324 2.1159 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279821689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:10 Heat of formation + Delta-G solvation = -98.146214 kcal Electronic energy + Delta-G solvation = -25301.679967 eV Core-core repulsion = 21729.656554 eV Total energy + Delta-G solvation = -3572.023413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52843 -40.08886 -38.30704 -36.08376 -34.59844 -34.53904 -32.70757 -31.73720 -31.29497 -29.53232 -27.64295 -26.94428 -23.83913 -23.52310 -22.18319 -21.84334 -21.40909 -19.88725 -18.71979 -17.94894 -17.72392 -16.87617 -16.78729 -16.70437 -16.33138 -15.94099 -15.87206 -15.29132 -15.02300 -14.82025 -14.67777 -14.53381 -14.31997 -14.01197 -13.80075 -13.67216 -13.24813 -13.16595 -12.89669 -12.86951 -12.64313 -12.53600 -12.45585 -12.14491 -11.93014 -11.84371 -11.70044 -11.48194 -11.12597 -11.06266 -10.82634 -10.26417 -10.05684 -9.79983 -9.63843 -8.64628 -8.34223 -6.11425 0.39394 0.49553 1.27310 1.43132 1.46767 1.56405 1.69096 2.24426 2.29732 2.81634 2.99957 3.31395 3.40719 3.46654 3.78361 3.91665 3.98437 4.12198 4.12746 4.17138 4.27622 4.31288 4.34321 4.41372 4.50396 4.54425 4.61042 4.74854 4.77679 4.85529 4.97704 5.06488 5.08166 5.13039 5.29830 5.33382 5.41527 5.50764 5.53952 5.57076 5.61924 5.62982 6.09287 6.19580 6.47523 6.60338 7.07217 7.29512 8.74605 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.003857 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.793677 B = 7257.717444 C = 9010.565419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.113 4.113 4 C 0.123 3.877 5 H 0.077 0.923 6 N -0.706 5.706 7 C 0.539 3.461 8 O -0.549 6.549 9 C -0.131 4.131 10 S -0.144 6.144 11 C -0.548 4.548 12 H 0.081 0.919 13 C 0.016 3.984 14 N -0.911 5.911 15 Si 0.995 3.005 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.262 1.262 19 C 0.158 3.842 20 H 0.135 0.865 21 O -0.551 6.551 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.124 4.124 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.406 0.594 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.271 0.729 39 H 0.381 0.619 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 23.044 5.693 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.151 4.151 4 C 0.018 3.982 5 H 0.095 0.905 6 N -0.361 5.361 7 C 0.325 3.675 8 O -0.426 6.426 9 C -0.282 4.282 10 S 0.083 5.917 11 C -0.695 4.695 12 H 0.099 0.901 13 C -0.189 4.189 14 N -0.548 5.548 15 Si 0.817 3.183 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.187 1.187 19 C 0.098 3.902 20 H 0.152 0.848 21 O -0.357 6.357 22 C -0.125 4.125 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.151 4.151 26 C -0.148 4.148 27 C -0.142 4.142 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.243 0.757 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.231 0.769 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.271 22.025 7.800 23.400 hybrid contribution 1.208 -0.243 -2.585 2.863 sum -0.063 21.783 5.215 22.398 Atomic orbital electron populations 1.21749 0.95174 1.01178 1.02279 1.21519 0.96032 0.97104 1.01069 1.21871 0.93186 0.96086 1.03941 1.21754 0.94873 0.94166 0.87430 0.90501 1.45715 1.67854 1.05539 1.17021 1.19836 0.76634 0.82789 0.88269 1.90709 1.49800 1.61176 1.40932 1.23373 1.05064 1.00686 0.99087 1.85539 1.86653 0.98170 1.21346 1.23175 1.50977 0.95778 0.99619 0.90088 1.26081 0.95062 0.95116 1.02668 1.70172 1.46855 1.00974 1.36781 0.85052 0.79102 0.77248 0.76911 1.18692 1.20425 1.18651 1.21068 0.87105 0.88284 0.93750 0.84766 1.86642 1.75572 1.55577 1.17946 1.20590 0.96477 1.01144 0.94285 1.21085 0.95408 1.00202 0.97112 1.21422 0.94054 0.99590 0.99555 1.21488 1.00955 0.99735 0.92872 1.21435 0.95151 0.99751 0.98422 1.21252 0.94197 0.99936 0.98775 0.92288 0.94041 0.91442 0.94418 0.93850 0.89341 0.90305 0.75701 0.87642 0.87878 0.92035 0.76934 0.84645 0.84560 0.84727 0.84507 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.91 71.98 0.71 -2.68 16 2 C -0.12 -3.31 4.54 30.59 0.14 -3.17 16 3 C -0.11 -2.27 4.61 30.59 0.14 -2.12 16 4 C 0.12 2.55 2.15 44.99 0.10 2.64 16 5 H 0.08 2.00 7.57 -2.39 -0.02 1.98 16 6 N -0.71 -16.44 4.22 -442.53 -1.87 -18.31 16 7 C 0.54 18.89 6.41 87.66 0.56 19.46 16 8 O -0.55 -23.94 13.02 -3.04 -0.04 -23.98 16 9 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 10 S -0.14 -7.92 20.57 -56.49 -1.16 -9.08 16 11 C -0.55 -31.10 9.50 67.95 0.65 -30.46 16 12 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 13 C 0.02 0.88 5.49 84.86 0.47 1.35 16 14 N -0.91 -55.92 13.22 21.65 0.29 -55.64 16 15 Si 1.00 43.39 29.55 68.60 2.03 45.41 16 16 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 19 C 0.16 2.47 3.12 29.85 0.09 2.56 16 20 H 0.13 1.76 8.05 -2.38 -0.02 1.74 16 21 O -0.55 -8.06 12.36 -148.98 -1.84 -9.90 16 22 C -0.12 -2.24 4.78 -19.87 -0.09 -2.33 16 23 C -0.12 -2.06 8.17 22.27 0.18 -1.88 16 24 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 25 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 26 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 27 C -0.12 -2.27 9.68 22.27 0.22 -2.05 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.29 5.65 -2.39 -0.01 1.27 16 32 H 0.04 1.38 7.85 -2.39 -0.02 1.36 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.46 7.73 -2.39 -0.02 1.44 16 35 H 0.41 6.86 5.61 -92.71 -0.52 6.34 16 36 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 37 H 0.10 3.67 8.14 -2.40 -0.02 3.65 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.38 3.73 6.26 -74.06 -0.46 3.27 16 40 H 0.14 1.61 5.62 -2.91 -0.02 1.59 16 41 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -76.36 370.46 1.70 -74.66 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.03 Total: 26.60 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 4.27 Total: -29.78 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -1.58 Total: -73.94 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.88 Total: -33.88 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -76.36 1.70 -74.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279821689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.485 kcal (2) G-P(sol) polarization free energy of solvation -76.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds