Wall clock time and date at job start Tue Mar 31 2020 14:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47704 * 54.99481 * 4 3 2 6 6 N 1.46502 * 109.46798 * 294.99603 * 4 3 2 7 7 C 1.34777 * 120.00376 * 85.00350 * 6 4 3 8 8 O 1.21289 * 119.99636 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00649 * 179.97438 * 7 6 4 10 10 S 1.80996 * 109.47395 * 180.02562 * 9 7 6 11 11 C 1.76202 * 100.00103 * 179.97438 * 10 9 7 12 12 H 1.07996 * 119.99805 * 0.02562 * 11 10 9 13 13 C 1.38791 * 119.99942 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00274 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99916 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47275 * 60.00194 * 15 13 11 17 17 H 1.48504 * 109.47098 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46973 * 300.00108 * 15 13 11 19 19 C 1.53000 * 109.47194 * 175.00077 * 4 3 2 20 20 H 1.09002 * 109.46818 * 299.99696 * 19 4 3 21 21 O 1.42898 * 109.47241 * 59.99386 * 19 4 3 22 22 C 1.50703 * 109.47186 * 179.97438 * 19 4 3 23 23 C 1.38227 * 119.99881 * 279.72390 * 22 19 4 24 24 C 1.38235 * 119.99620 * 179.78726 * 23 22 19 25 25 C 1.38230 * 120.00308 * 0.44300 * 24 23 22 26 26 C 1.38234 * 120.00004 * 359.81202 * 25 24 23 27 27 C 1.38236 * 119.99972 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 0.97002 * 120.00091 * 264.99863 * 6 4 3 36 36 H 1.09005 * 109.46742 * 300.00094 * 9 7 6 37 37 H 1.09000 * 109.46761 * 59.99796 * 9 7 6 38 38 H 0.96997 * 120.00179 * 179.97438 * 14 13 11 39 39 H 0.96702 * 113.99841 * 60.00376 * 21 19 4 40 40 H 1.07996 * 120.00447 * 359.97438 * 23 22 19 41 41 H 1.08007 * 120.00180 * 180.27616 * 24 23 22 42 42 H 1.08006 * 120.00180 * 179.83184 * 25 24 23 43 43 H 1.08001 * 120.00378 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00406 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 7 4.0587 0.8586 1.2509 7 6 4.1875 -0.4781 1.3660 8 8 3.8983 -1.1976 0.4334 9 6 4.6908 -1.0787 2.6532 10 16 4.7522 -2.8806 2.4948 11 6 5.3572 -3.3079 4.0936 12 1 5.5667 -2.5333 4.8164 13 6 5.5636 -4.6399 4.4243 14 7 5.3070 -5.5841 3.5438 15 14 6.2044 -5.0930 6.1195 16 1 5.2541 -4.6098 7.1533 17 1 6.3379 -6.5686 6.2202 18 1 7.5311 -4.4607 6.3325 19 6 4.0800 2.8795 -0.1263 20 1 3.7163 3.3139 -1.0576 21 8 3.6040 3.6521 0.9775 22 6 5.5870 2.8795 -0.1264 23 6 6.2781 2.7809 1.0667 24 6 7.6605 2.7765 1.0663 25 6 8.3516 2.8799 -0.1264 26 6 7.6605 2.9838 -1.3190 27 6 6.2781 2.9837 -1.3190 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 4.2898 1.4340 1.9969 36 1 5.6903 -0.6986 2.8650 37 1 4.0189 -0.8078 3.4676 38 1 5.4516 -6.5150 3.7748 39 1 3.8897 3.3225 1.8405 40 1 5.7382 2.7042 1.9988 41 1 8.2006 2.6949 1.9980 42 1 9.4317 2.8791 -0.1264 43 1 8.2005 3.0650 -2.2508 44 1 5.7381 3.0645 -2.2508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279821705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:13 Heat of formation + Delta-G solvation = -75.155604 kcal Electronic energy + Delta-G solvation = -25277.234921 eV Core-core repulsion = 21706.208456 eV Total energy + Delta-G solvation = -3571.026465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.55586 -39.04968 -37.40198 -35.10433 -33.39288 -32.43951 -31.89735 -31.02886 -30.11260 -28.28182 -26.09828 -25.49095 -22.96630 -22.72277 -21.20953 -20.88346 -20.27124 -18.19974 -17.69811 -16.76935 -16.59299 -15.96556 -15.52100 -15.37300 -14.89691 -14.81428 -14.45950 -14.11850 -14.09380 -13.77558 -13.57537 -13.45044 -13.01697 -12.96114 -12.70536 -12.61537 -12.11030 -11.90966 -11.72136 -11.48230 -11.33565 -11.16641 -11.05796 -11.04949 -10.87705 -10.77677 -10.41689 -10.20161 -9.82554 -9.37416 -9.13117 -9.06968 -8.96883 -8.78657 -8.25127 -6.50581 -6.22581 -3.93028 1.12333 1.21849 2.98429 3.09245 3.22371 3.26209 3.29007 3.53505 3.66875 4.11077 4.19530 4.24971 4.57352 4.62710 4.77688 4.91560 5.06325 5.09316 5.11408 5.12821 5.18209 5.29522 5.33726 5.41081 5.52306 5.61680 5.71893 5.75545 5.80143 5.82740 5.87158 6.00159 6.03325 6.11336 6.24799 6.27676 6.30565 6.34036 6.42945 6.60691 6.68407 6.78700 7.19808 7.57897 7.62611 8.33771 8.60188 9.22753 10.84743 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.003804 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.735597 B = 7358.660063 C = 9084.328681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.120 3.880 5 H 0.097 0.903 6 N -0.731 5.731 7 C 0.536 3.464 8 O -0.508 6.508 9 C -0.154 4.154 10 S -0.056 6.056 11 C -0.537 4.537 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.868 5.868 15 Si 0.917 3.083 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.142 3.858 20 H 0.119 0.881 21 O -0.548 6.548 22 C -0.114 4.114 23 C -0.106 4.106 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.109 4.109 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.389 0.611 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.269 0.731 39 H 0.370 0.630 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 20.532 -7.281 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.160 4.160 4 C 0.015 3.985 5 H 0.115 0.885 6 N -0.388 5.388 7 C 0.322 3.678 8 O -0.381 6.381 9 C -0.305 4.305 10 S 0.170 5.830 11 C -0.685 4.685 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 C 0.083 3.917 20 H 0.137 0.863 21 O -0.353 6.353 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.136 4.136 27 C -0.128 4.128 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.223 0.777 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.218 0.782 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.292 19.467 -9.370 21.643 hybrid contribution 1.264 0.394 2.983 3.264 sum -0.028 19.861 -6.386 20.862 Atomic orbital electron populations 1.21778 0.96633 1.01483 1.00851 1.21607 0.94711 0.95713 1.03856 1.21944 0.93707 0.98003 1.02367 1.21657 0.94585 0.93174 0.89116 0.88455 1.46023 1.69619 1.07321 1.15795 1.20189 0.76742 0.81312 0.89562 1.90714 1.47618 1.59750 1.40050 1.23539 1.03498 1.06358 0.97118 1.85383 1.86217 0.90891 1.20488 1.22823 1.51069 0.95042 0.99558 0.91057 1.24970 0.95073 0.95289 0.98120 1.70001 1.45439 1.00528 1.34321 0.86248 0.79321 0.77492 0.82587 1.19932 1.20796 1.19957 1.21210 0.88519 0.90543 0.91472 0.86339 1.86647 1.76445 1.55655 1.16563 1.20433 0.96094 1.00803 0.94076 1.20787 0.94487 1.00062 0.97041 1.21141 0.94157 0.99427 0.98417 1.21189 1.00030 0.99789 0.92668 1.21140 0.94229 0.99984 0.98197 1.20959 0.94433 1.00079 0.97287 0.92780 0.93290 0.93400 0.91499 0.91078 0.91525 0.91374 0.77681 0.89449 0.89408 0.92129 0.78158 0.86712 0.85814 0.86033 0.85978 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.68 4.53 -26.73 -0.12 -1.81 16 3 C -0.12 -1.35 4.67 -26.73 -0.12 -1.48 16 4 C 0.12 1.35 2.08 -67.93 -0.14 1.20 16 5 H 0.10 1.29 7.58 -51.93 -0.39 0.90 16 6 N -0.73 -9.01 4.14 -53.81 -0.22 -9.23 16 7 C 0.54 9.37 6.42 -10.99 -0.07 9.30 16 8 O -0.51 -10.68 13.00 5.55 0.07 -10.61 16 9 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 10 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 11 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 12 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 13 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 15 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 19 C 0.14 1.31 3.09 -27.88 -0.09 1.22 16 20 H 0.12 0.96 8.01 -51.93 -0.42 0.54 16 21 O -0.55 -5.01 12.60 -35.23 -0.44 -5.45 16 22 C -0.11 -1.14 4.88 -104.62 -0.51 -1.65 16 23 C -0.11 -1.05 8.32 -39.59 -0.33 -1.38 16 24 C -0.11 -1.14 10.05 -39.59 -0.40 -1.54 16 25 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.11 -1.07 9.67 -39.58 -0.38 -1.45 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 32 H 0.07 1.20 5.65 -51.93 -0.29 0.90 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.74 7.84 -51.93 -0.41 0.34 16 35 H 0.39 3.73 5.47 -40.82 -0.22 3.51 16 36 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.37 2.54 6.11 45.56 0.28 2.82 16 40 H 0.12 0.90 5.50 -52.49 -0.29 0.61 16 41 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -34.05 370.45 -9.61 -43.66 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.92 Total: 6.49 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.17 Total: -17.68 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.51 Total: -34.50 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.37 Total: -16.06 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.05 -9.61 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279821705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.500 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds