Wall clock time and date at job start Tue Mar 31 2020 14:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47704 * 54.99481 * 4 3 2 6 6 N 1.46502 * 109.46798 * 294.99603 * 4 3 2 7 7 C 1.34777 * 120.00376 * 85.00350 * 6 4 3 8 8 O 1.21289 * 119.99636 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00649 * 179.97438 * 7 6 4 10 10 S 1.80996 * 109.47395 * 180.02562 * 9 7 6 11 11 C 1.76202 * 100.00103 * 179.97438 * 10 9 7 12 12 H 1.07996 * 119.99805 * 0.02562 * 11 10 9 13 13 C 1.38791 * 119.99942 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00274 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99916 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47275 * 60.00194 * 15 13 11 17 17 H 1.48504 * 109.47098 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46973 * 300.00108 * 15 13 11 19 19 C 1.53000 * 109.47194 * 175.00077 * 4 3 2 20 20 H 1.09002 * 109.46818 * 299.99696 * 19 4 3 21 21 O 1.42898 * 109.47241 * 59.99386 * 19 4 3 22 22 C 1.50703 * 109.47186 * 179.97438 * 19 4 3 23 23 C 1.38227 * 119.99881 * 279.72390 * 22 19 4 24 24 C 1.38235 * 119.99620 * 179.78726 * 23 22 19 25 25 C 1.38230 * 120.00308 * 0.44300 * 24 23 22 26 26 C 1.38234 * 120.00004 * 359.81202 * 25 24 23 27 27 C 1.38236 * 119.99972 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 0.97002 * 120.00091 * 264.99863 * 6 4 3 36 36 H 1.09005 * 109.46742 * 300.00094 * 9 7 6 37 37 H 1.09000 * 109.46761 * 59.99796 * 9 7 6 38 38 H 0.96997 * 120.00179 * 179.97438 * 14 13 11 39 39 H 0.96702 * 113.99841 * 60.00376 * 21 19 4 40 40 H 1.07996 * 120.00447 * 359.97438 * 23 22 19 41 41 H 1.08007 * 120.00180 * 180.27616 * 24 23 22 42 42 H 1.08006 * 120.00180 * 179.83184 * 25 24 23 43 43 H 1.08001 * 120.00378 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00406 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 7 4.0587 0.8586 1.2509 7 6 4.1875 -0.4781 1.3660 8 8 3.8983 -1.1976 0.4334 9 6 4.6908 -1.0787 2.6532 10 16 4.7522 -2.8806 2.4948 11 6 5.3572 -3.3079 4.0936 12 1 5.5667 -2.5333 4.8164 13 6 5.5636 -4.6399 4.4243 14 7 5.3070 -5.5841 3.5438 15 14 6.2044 -5.0930 6.1195 16 1 5.2541 -4.6098 7.1533 17 1 6.3379 -6.5686 6.2202 18 1 7.5311 -4.4607 6.3325 19 6 4.0800 2.8795 -0.1263 20 1 3.7163 3.3139 -1.0576 21 8 3.6040 3.6521 0.9775 22 6 5.5870 2.8795 -0.1264 23 6 6.2781 2.7809 1.0667 24 6 7.6605 2.7765 1.0663 25 6 8.3516 2.8799 -0.1264 26 6 7.6605 2.9838 -1.3190 27 6 6.2781 2.9837 -1.3190 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 4.2898 1.4340 1.9969 36 1 5.6903 -0.6986 2.8650 37 1 4.0189 -0.8078 3.4676 38 1 5.4516 -6.5150 3.7748 39 1 3.8897 3.3225 1.8405 40 1 5.7382 2.7042 1.9988 41 1 8.2006 2.6949 1.9980 42 1 9.4317 2.8791 -0.1264 43 1 8.2005 3.0650 -2.2508 44 1 5.7381 3.0645 -2.2508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279821705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:12 Heat of formation + Delta-G solvation = -97.439635 kcal Electronic energy + Delta-G solvation = -25278.201229 eV Core-core repulsion = 21706.208456 eV Total energy + Delta-G solvation = -3571.992773 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53272 -40.09138 -38.31174 -36.09335 -34.59685 -34.53314 -32.72725 -31.74500 -31.29939 -29.54733 -27.64371 -26.92309 -23.87430 -23.50159 -22.18416 -21.83677 -21.44278 -19.89303 -18.73977 -17.95400 -17.72437 -16.87597 -16.78571 -16.70739 -16.33357 -15.93483 -15.86932 -15.29389 -14.99642 -14.82684 -14.67674 -14.53669 -14.33302 -14.01083 -13.80213 -13.68036 -13.25591 -13.16608 -12.91226 -12.86955 -12.64988 -12.55191 -12.45403 -12.14437 -11.93330 -11.84989 -11.70250 -11.47799 -11.12579 -11.05917 -10.83151 -10.26321 -10.06610 -9.80216 -9.64473 -8.64583 -8.34177 -6.11402 0.38757 0.49429 1.27253 1.43170 1.46736 1.56320 1.68764 2.23535 2.29334 2.81362 3.00040 3.30858 3.41620 3.45654 3.78464 3.90228 3.98266 4.12250 4.12653 4.16900 4.27258 4.31414 4.33945 4.41899 4.50456 4.54367 4.60625 4.74843 4.77250 4.84878 4.97468 5.06196 5.07681 5.12860 5.29728 5.33195 5.41660 5.50175 5.53651 5.56931 5.61652 5.62593 6.08989 6.19672 6.46175 6.58699 7.07312 7.29027 8.74636 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.003804 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.735597 B = 7358.660063 C = 9084.328681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.114 4.114 4 C 0.123 3.877 5 H 0.077 0.923 6 N -0.706 5.706 7 C 0.539 3.461 8 O -0.549 6.549 9 C -0.131 4.131 10 S -0.145 6.145 11 C -0.548 4.548 12 H 0.081 0.919 13 C 0.016 3.984 14 N -0.911 5.911 15 Si 0.995 3.005 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.262 1.262 19 C 0.158 3.842 20 H 0.136 0.864 21 O -0.551 6.551 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.132 4.132 26 C -0.129 4.129 27 C -0.122 4.122 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.405 0.595 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.271 0.729 39 H 0.380 0.620 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 23.004 -6.225 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.152 4.152 4 C 0.018 3.982 5 H 0.095 0.905 6 N -0.362 5.362 7 C 0.325 3.675 8 O -0.426 6.426 9 C -0.282 4.282 10 S 0.083 5.917 11 C -0.695 4.695 12 H 0.099 0.901 13 C -0.189 4.189 14 N -0.548 5.548 15 Si 0.817 3.183 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.187 1.187 19 C 0.098 3.902 20 H 0.153 0.847 21 O -0.358 6.358 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.140 4.140 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.243 0.757 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.230 0.770 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.203 22.001 -8.297 23.545 hybrid contribution 1.235 -0.266 2.590 2.882 sum 0.032 21.736 -5.707 22.472 Atomic orbital electron populations 1.21749 0.95179 1.01182 1.02278 1.21518 0.96024 0.97081 1.01082 1.21890 0.93223 0.96152 1.03915 1.21742 0.94853 0.94184 0.87401 0.90526 1.45716 1.67921 1.05570 1.16992 1.19840 0.76648 0.82752 0.88257 1.90713 1.49659 1.61145 1.41051 1.23375 1.05135 1.00686 0.99043 1.85547 1.86578 0.98140 1.21478 1.23174 1.50899 0.95751 0.99715 0.90065 1.26078 0.95073 0.95122 1.02649 1.70171 1.46832 1.00945 1.36829 0.85055 0.79105 0.77242 0.76924 1.18663 1.20441 1.18681 1.21092 0.88019 0.88750 0.92341 0.84655 1.86646 1.76427 1.55584 1.17104 1.20606 0.96538 1.01242 0.94351 1.21072 0.94757 0.99986 0.97842 1.21421 0.94614 0.99715 0.99111 1.21493 1.01023 0.99602 0.92841 1.21448 0.94538 0.99764 0.98978 1.21285 0.94838 0.99774 0.98073 0.94041 0.92315 0.91416 0.93831 0.94418 0.89254 0.90379 0.75717 0.87766 0.87613 0.92039 0.77025 0.85022 0.84754 0.84670 0.84300 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.91 71.98 0.71 -2.69 16 2 C -0.12 -3.31 4.53 30.59 0.14 -3.17 16 3 C -0.11 -2.29 4.67 30.59 0.14 -2.15 16 4 C 0.12 2.56 2.08 44.99 0.09 2.66 16 5 H 0.08 2.00 7.58 -2.39 -0.02 1.98 16 6 N -0.71 -16.39 4.14 -442.53 -1.83 -18.22 16 7 C 0.54 18.83 6.42 87.66 0.56 19.40 16 8 O -0.55 -23.89 13.00 -3.06 -0.04 -23.93 16 9 C -0.13 -5.06 6.16 71.23 0.44 -4.63 16 10 S -0.14 -7.92 20.57 -56.49 -1.16 -9.09 16 11 C -0.55 -31.05 9.50 67.95 0.65 -30.40 16 12 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 13 C 0.02 0.89 5.49 84.86 0.47 1.35 16 14 N -0.91 -55.88 13.22 21.65 0.29 -55.60 16 15 Si 1.00 43.36 29.55 68.60 2.03 45.38 16 16 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 19 C 0.16 2.48 3.09 29.85 0.09 2.58 16 20 H 0.14 1.75 8.01 -2.39 -0.02 1.73 16 21 O -0.55 -8.25 12.60 -148.98 -1.88 -10.13 16 22 C -0.13 -2.30 4.88 -19.87 -0.10 -2.40 16 23 C -0.12 -2.12 8.32 22.27 0.19 -1.94 16 24 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 25 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 26 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 27 C -0.12 -2.18 9.67 22.27 0.22 -1.96 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.38 7.85 -2.39 -0.02 1.37 16 32 H 0.04 1.29 5.65 -2.39 -0.01 1.28 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.47 7.84 -2.39 -0.02 1.45 16 35 H 0.41 6.77 5.47 -92.71 -0.51 6.26 16 36 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 39 H 0.38 3.92 6.11 -74.06 -0.45 3.46 16 40 H 0.13 1.73 5.50 -2.91 -0.02 1.71 16 41 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.14 1.89 8.04 -2.91 -0.02 1.87 16 Total: -1.00 -76.39 370.45 1.73 -74.67 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.05 Total: 26.75 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 4.27 Total: -29.83 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -1.54 Total: -73.82 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.92 Total: -34.06 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.09 kcal Total: -76.39 1.73 -74.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279821705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.770 kcal (2) G-P(sol) polarization free energy of solvation -76.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds