Wall clock time and date at job start Tue Mar 31 2020 14:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.53007 * 109.47067 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47224 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99619 * 90.00069 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.00051 * 6 5 4 8 8 C 1.38164 * 120.02855 * 259.99731 * 7 6 5 9 9 C 1.38239 * 120.05874 * 179.97438 * 8 7 6 10 10 C 1.38285 * 120.10991 * 0.02562 * 9 8 7 11 11 C 1.38127 * 120.05699 * 0.02562 * 10 9 8 12 12 C 1.38707 * 120.03045 * 79.72186 * 7 6 5 13 13 O 1.35909 * 120.05375 * 359.97438 * 12 7 6 14 14 C 1.34774 * 120.00119 * 269.99893 * 5 4 3 15 15 O 1.21291 * 119.99579 * 180.02562 * 14 5 4 16 16 C 1.50697 * 120.00055 * 0.02562 * 14 5 4 17 17 S 1.81003 * 109.46854 * 179.97438 * 16 14 5 18 18 C 1.76206 * 99.99799 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99898 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99713 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00474 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99827 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46955 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47545 * 119.99580 * 22 20 18 25 25 H 1.48502 * 109.47131 * 239.99975 * 22 20 18 26 26 H 1.09002 * 109.46606 * 299.99700 * 1 2 3 27 27 H 1.09000 * 109.47479 * 59.99335 * 1 2 3 28 28 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46606 * 240.00300 * 2 1 3 30 30 H 1.08993 * 109.47515 * 120.00225 * 2 1 3 31 31 H 1.09002 * 109.47165 * 60.00642 * 3 2 1 32 32 H 1.08997 * 109.47215 * 299.99937 * 3 2 1 33 33 H 1.09006 * 109.46834 * 59.99650 * 4 3 2 34 34 H 1.09003 * 109.46788 * 300.00337 * 4 3 2 35 35 H 1.09002 * 109.47068 * 210.00020 * 6 5 4 36 36 H 1.09001 * 109.47372 * 330.00108 * 6 5 4 37 37 H 1.08004 * 119.96993 * 359.97438 * 8 7 6 38 38 H 1.08007 * 119.94869 * 180.02562 * 9 8 7 39 39 H 1.08002 * 119.97368 * 179.97438 * 10 9 8 40 40 H 1.07999 * 120.02558 * 179.97438 * 11 10 9 41 41 H 0.96696 * 113.99606 * 89.99706 * 13 12 7 42 42 H 1.08995 * 109.46788 * 299.99564 * 16 14 5 43 43 H 1.08992 * 109.47134 * 59.99783 * 16 14 5 44 44 H 0.96998 * 120.00127 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.3031 3.5146 1.2672 7 6 5.7266 3.2778 1.7017 8 6 6.0073 2.3230 2.6601 9 6 7.3129 2.1050 3.0587 10 6 8.3410 2.8419 2.5001 11 6 8.0656 3.7984 1.5424 12 6 6.7567 4.0144 1.1358 13 8 6.4839 4.9499 0.1885 14 6 4.2826 3.4586 -1.1687 15 8 4.6873 4.6020 -1.1691 16 6 4.0303 2.7481 -2.4735 17 16 4.4213 3.8569 -3.8497 18 6 4.0475 2.8004 -5.2094 19 1 3.6925 1.7962 -5.0313 20 6 4.2095 3.2590 -6.5094 21 7 4.6417 4.4832 -6.7266 22 14 3.8126 2.1392 -7.9510 23 1 3.3476 0.8237 -7.4426 24 1 2.7445 2.7564 -8.7778 25 1 5.0305 1.9472 -8.7786 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8909 34 1 3.9337 0.9284 0.8891 35 1 4.1361 4.5838 1.1367 36 1 3.6226 3.1307 2.0273 37 1 5.2059 1.7464 3.0982 38 1 7.5303 1.3578 3.8077 39 1 9.3602 2.6700 2.8135 40 1 8.8689 4.3740 1.1068 41 1 6.3138 5.8325 0.5450 42 1 4.6602 1.8604 -2.5314 43 1 2.9823 2.4543 -2.5305 44 1 4.7552 4.8034 -7.6351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282503216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:17 Heat of formation + Delta-G solvation = -63.379357 kcal Electronic energy + Delta-G solvation = -25209.039292 eV Core-core repulsion = 21638.523483 eV Total energy + Delta-G solvation = -3570.515809 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17205 -38.86320 -36.44634 -36.15848 -34.26520 -32.37259 -31.98004 -29.94390 -29.05200 -28.72859 -25.80875 -25.29128 -23.65892 -22.53796 -21.57890 -21.21557 -18.99987 -18.09034 -17.56631 -16.69131 -16.12860 -16.00242 -15.50853 -15.24687 -15.13054 -14.75718 -14.62587 -13.92563 -13.80550 -13.70729 -13.34101 -13.14079 -13.06116 -12.62484 -12.57144 -12.18945 -12.04135 -11.97457 -11.87551 -11.38931 -11.30505 -11.28248 -11.09952 -11.03454 -10.93772 -10.70326 -10.62010 -10.21477 -9.72717 -9.20559 -9.01854 -8.87639 -8.56402 -8.34540 -8.12317 -6.40935 -6.16240 -3.84916 1.19153 1.27548 3.07115 3.24320 3.29278 3.30842 3.34467 3.61026 3.81710 4.26248 4.42156 4.67760 4.74202 4.81427 4.84543 4.95831 4.99353 5.06388 5.15117 5.18815 5.24243 5.40351 5.46346 5.50135 5.55104 5.63394 5.67680 5.70391 5.79692 5.87119 5.88860 5.94733 6.02961 6.04894 6.15223 6.19655 6.29654 6.34011 6.39263 6.49933 6.78454 6.83843 7.65060 7.73104 7.99595 8.40974 8.81819 9.29286 10.91201 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.004037 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.313960 B = 6934.177123 C = 8861.883661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.113 3.887 5 N -0.616 5.616 6 C 0.166 3.834 7 C -0.137 4.137 8 C -0.095 4.095 9 C -0.140 4.140 10 C -0.104 4.104 11 C -0.154 4.154 12 C 0.133 3.867 13 O -0.459 6.459 14 C 0.528 3.472 15 O -0.483 6.483 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.533 4.533 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.916 3.084 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.383 0.617 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 -6.796 22.043 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.178 4.178 4 C -0.011 4.011 5 N -0.352 5.352 6 C 0.043 3.957 7 C -0.138 4.138 8 C -0.114 4.114 9 C -0.158 4.158 10 C -0.122 4.122 11 C -0.172 4.172 12 C 0.087 3.913 13 O -0.268 6.268 14 C 0.315 3.685 15 O -0.355 6.355 16 C -0.298 4.298 17 S 0.167 5.833 18 C -0.681 4.681 19 H 0.089 0.911 20 C -0.135 4.135 21 N -0.504 5.504 22 Si 0.743 3.257 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.240 0.760 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.006 -5.387 21.484 22.149 hybrid contribution -0.674 -1.859 -0.624 2.074 sum -0.680 -7.247 20.860 22.094 Atomic orbital electron populations 1.21757 0.95796 1.01437 1.01934 1.21454 0.96018 0.96471 1.02068 1.22082 0.95716 0.97100 1.02921 1.21550 0.93673 0.82878 1.03000 1.47934 1.67991 1.14163 1.05095 1.20015 0.90870 0.99248 0.85521 1.20728 0.96702 0.98907 0.97512 1.20921 0.96731 0.96862 0.96858 1.21064 0.92861 1.00647 1.01276 1.21020 0.99150 0.95632 0.96408 1.21545 0.96677 1.00639 0.98385 1.18564 0.91260 0.92884 0.88623 1.85228 1.91678 1.20282 1.29649 1.20233 0.77021 0.86956 0.84272 1.90691 1.41460 1.17037 1.86273 1.23552 1.04257 1.04356 0.97617 1.85354 1.86921 1.17789 0.93209 1.22919 1.51312 1.01531 0.92368 0.91066 1.24968 0.94777 0.95496 0.98302 1.70031 1.43279 1.15643 1.21398 0.86158 0.78153 0.80164 0.81274 1.19647 1.20600 1.20610 0.92941 0.92485 0.92895 0.91672 0.92142 0.91851 0.91165 0.90219 0.91019 0.89235 0.90467 0.86089 0.86168 0.86046 0.85558 0.76036 0.89906 0.89689 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.11 5.93 -26.73 -0.16 -1.27 16 3 C -0.14 -1.48 5.54 -26.73 -0.15 -1.63 16 4 C 0.11 1.32 5.21 -4.04 -0.02 1.30 16 5 N -0.62 -8.98 2.46 -175.05 -0.43 -9.41 16 6 C 0.17 2.06 5.38 -5.19 -0.03 2.03 16 7 C -0.14 -1.70 5.47 -104.47 -0.57 -2.28 16 8 C -0.10 -0.98 9.66 -39.61 -0.38 -1.36 16 9 C -0.14 -1.37 10.04 -39.56 -0.40 -1.77 16 10 C -0.10 -1.09 10.04 -39.61 -0.40 -1.48 16 11 C -0.15 -1.91 9.99 -39.43 -0.39 -2.31 16 12 C 0.13 1.87 6.68 -39.22 -0.26 1.60 16 13 O -0.46 -7.36 9.21 -43.70 -0.40 -7.77 16 14 C 0.53 10.25 7.61 -10.99 -0.08 10.17 16 15 O -0.48 -10.68 12.00 -18.69 -0.22 -10.90 16 16 C -0.15 -3.13 4.71 36.00 0.17 -2.96 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 18 C -0.53 -15.51 9.50 30.94 0.29 -15.21 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.57 13.22 55.49 0.73 -25.83 16 22 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.89 7.22 -51.93 -0.37 0.52 16 33 H 0.08 1.01 6.44 -51.93 -0.33 0.68 16 34 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.09 1.20 7.14 -51.93 -0.37 0.83 16 36 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 37 H 0.12 0.96 8.04 -52.48 -0.42 0.54 16 38 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.38 4.58 9.06 45.56 0.41 5.00 16 42 H 0.08 1.71 7.40 -51.92 -0.38 1.32 16 43 H 0.08 1.69 7.18 -51.92 -0.37 1.32 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -35.35 377.14 -10.01 -45.36 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.03 Total: 4.06 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -2.11 Total: -14.09 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.30 Total: -35.24 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.63 Total: -18.67 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.35 -10.01 -45.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282503216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.020 kcal (2) G-P(sol) polarization free energy of solvation -35.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds