Wall clock time and date at job start Tue Mar 31 2020 14:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.53007 * 109.47067 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47224 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99619 * 90.00069 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.00051 * 6 5 4 8 8 C 1.38164 * 120.02855 * 259.99731 * 7 6 5 9 9 C 1.38239 * 120.05874 * 179.97438 * 8 7 6 10 10 C 1.38285 * 120.10991 * 0.02562 * 9 8 7 11 11 C 1.38127 * 120.05699 * 0.02562 * 10 9 8 12 12 C 1.38707 * 120.03045 * 79.72186 * 7 6 5 13 13 O 1.35909 * 120.05375 * 359.97438 * 12 7 6 14 14 C 1.34774 * 120.00119 * 269.99893 * 5 4 3 15 15 O 1.21291 * 119.99579 * 180.02562 * 14 5 4 16 16 C 1.50697 * 120.00055 * 0.02562 * 14 5 4 17 17 S 1.81003 * 109.46854 * 179.97438 * 16 14 5 18 18 C 1.76206 * 99.99799 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99898 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99713 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00474 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99827 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46955 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47545 * 119.99580 * 22 20 18 25 25 H 1.48502 * 109.47131 * 239.99975 * 22 20 18 26 26 H 1.09002 * 109.46606 * 299.99700 * 1 2 3 27 27 H 1.09000 * 109.47479 * 59.99335 * 1 2 3 28 28 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46606 * 240.00300 * 2 1 3 30 30 H 1.08993 * 109.47515 * 120.00225 * 2 1 3 31 31 H 1.09002 * 109.47165 * 60.00642 * 3 2 1 32 32 H 1.08997 * 109.47215 * 299.99937 * 3 2 1 33 33 H 1.09006 * 109.46834 * 59.99650 * 4 3 2 34 34 H 1.09003 * 109.46788 * 300.00337 * 4 3 2 35 35 H 1.09002 * 109.47068 * 210.00020 * 6 5 4 36 36 H 1.09001 * 109.47372 * 330.00108 * 6 5 4 37 37 H 1.08004 * 119.96993 * 359.97438 * 8 7 6 38 38 H 1.08007 * 119.94869 * 180.02562 * 9 8 7 39 39 H 1.08002 * 119.97368 * 179.97438 * 10 9 8 40 40 H 1.07999 * 120.02558 * 179.97438 * 11 10 9 41 41 H 0.96696 * 113.99606 * 89.99706 * 13 12 7 42 42 H 1.08995 * 109.46788 * 299.99564 * 16 14 5 43 43 H 1.08992 * 109.47134 * 59.99783 * 16 14 5 44 44 H 0.96998 * 120.00127 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.3031 3.5146 1.2672 7 6 5.7266 3.2778 1.7017 8 6 6.0073 2.3230 2.6601 9 6 7.3129 2.1050 3.0587 10 6 8.3410 2.8419 2.5001 11 6 8.0656 3.7984 1.5424 12 6 6.7567 4.0144 1.1358 13 8 6.4839 4.9499 0.1885 14 6 4.2826 3.4586 -1.1687 15 8 4.6873 4.6020 -1.1691 16 6 4.0303 2.7481 -2.4735 17 16 4.4213 3.8569 -3.8497 18 6 4.0475 2.8004 -5.2094 19 1 3.6925 1.7962 -5.0313 20 6 4.2095 3.2590 -6.5094 21 7 4.6417 4.4832 -6.7266 22 14 3.8126 2.1392 -7.9510 23 1 3.3476 0.8237 -7.4426 24 1 2.7445 2.7564 -8.7778 25 1 5.0305 1.9472 -8.7786 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8909 34 1 3.9337 0.9284 0.8891 35 1 4.1361 4.5838 1.1367 36 1 3.6226 3.1307 2.0273 37 1 5.2059 1.7464 3.0982 38 1 7.5303 1.3578 3.8077 39 1 9.3602 2.6700 2.8135 40 1 8.8689 4.3740 1.1068 41 1 6.3138 5.8325 0.5450 42 1 4.6602 1.8604 -2.5314 43 1 2.9823 2.4543 -2.5305 44 1 4.7552 4.8034 -7.6351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282503216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:16 Heat of formation + Delta-G solvation = -84.419931 kcal Electronic energy + Delta-G solvation = -25209.951679 eV Core-core repulsion = 21638.523483 eV Total energy + Delta-G solvation = -3571.428197 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26287 -40.05200 -37.52919 -37.24002 -35.21380 -34.59004 -32.99486 -30.94613 -30.45420 -29.63130 -27.72922 -26.66753 -24.62310 -23.40915 -22.53430 -22.01442 -20.48379 -19.44310 -19.09129 -18.04570 -17.29774 -16.99382 -16.89053 -16.55072 -16.31134 -16.10737 -15.76948 -15.72388 -14.82197 -14.71173 -14.60096 -14.38385 -14.23996 -13.92027 -13.54056 -13.34004 -13.17251 -13.10817 -12.94563 -12.92225 -12.86907 -12.57801 -12.30518 -12.18937 -12.10940 -11.86595 -11.68943 -11.41965 -11.24251 -11.15810 -10.62743 -10.24468 -9.81662 -9.60915 -9.40627 -8.64770 -8.35029 -6.12111 0.30904 0.41636 1.27775 1.39502 1.46831 1.58413 1.79728 2.21466 2.29088 2.83613 2.98636 3.28699 3.49708 3.70914 3.84809 3.95928 3.98724 4.06721 4.20372 4.27053 4.29388 4.35532 4.38637 4.47292 4.58421 4.61971 4.66675 4.73735 4.82628 4.87805 5.00312 5.02491 5.09850 5.12606 5.31386 5.38600 5.40431 5.46961 5.51184 5.57342 5.59543 5.73694 6.00308 6.19097 6.41690 7.01458 7.05994 7.37220 8.74481 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.004037 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.313960 B = 6934.177123 C = 8861.883661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.132 4.132 4 C 0.108 3.892 5 N -0.603 5.603 6 C 0.166 3.834 7 C -0.149 4.149 8 C -0.089 4.089 9 C -0.136 4.136 10 C -0.104 4.104 11 C -0.174 4.174 12 C 0.100 3.900 13 O -0.489 6.489 14 C 0.524 3.476 15 O -0.519 6.519 16 C -0.120 4.120 17 S -0.144 6.144 18 C -0.547 4.547 19 H 0.077 0.923 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.273 1.273 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.121 0.879 41 H 0.390 0.610 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 -10.142 24.306 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.171 4.171 4 C -0.015 4.015 5 N -0.337 5.337 6 C 0.044 3.956 7 C -0.151 4.151 8 C -0.107 4.107 9 C -0.154 4.154 10 C -0.122 4.122 11 C -0.193 4.193 12 C 0.054 3.946 13 O -0.300 6.300 14 C 0.310 3.690 15 O -0.393 6.393 16 C -0.272 4.272 17 S 0.083 5.917 18 C -0.695 4.695 19 H 0.095 0.905 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.198 1.198 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.139 0.861 41 H 0.247 0.753 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.727 -8.762 23.796 25.369 hybrid contribution -0.422 -0.849 -1.147 1.488 sum -1.150 -9.611 22.650 24.631 Atomic orbital electron populations 1.21764 0.95625 1.02006 1.01618 1.21436 0.96127 0.95260 1.02788 1.22006 0.94677 0.98180 1.02234 1.21809 0.94454 0.81100 1.04117 1.47869 1.66382 1.15077 1.04347 1.20205 0.92093 0.98349 0.84911 1.20762 0.95957 0.99781 0.98567 1.21291 0.98093 0.95804 0.95508 1.21498 0.92307 1.00474 1.01123 1.21363 1.00888 0.94638 0.95311 1.21667 0.96102 1.01878 0.99609 1.18946 0.92625 0.93468 0.89537 1.85198 1.91972 1.21326 1.31507 1.19952 0.77377 0.86615 0.85058 1.90686 1.43357 1.18463 1.86823 1.23363 1.04869 1.02749 0.96185 1.85486 1.87657 1.21641 0.96901 1.23221 1.51617 1.01697 0.92945 0.90453 1.26101 0.94153 0.97161 1.01554 1.70189 1.44326 1.17845 1.22359 0.84937 0.78204 0.78176 0.76828 1.18168 1.19672 1.19821 0.92074 0.94037 0.91904 0.92496 0.89853 0.90440 0.93992 0.91436 0.87559 0.91147 0.86456 0.82735 0.82826 0.83695 0.86060 0.75278 0.89277 0.88496 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.61 16 2 C -0.12 -1.81 5.93 30.59 0.18 -1.63 16 3 C -0.13 -2.50 5.54 30.60 0.17 -2.33 16 4 C 0.11 2.25 5.21 86.38 0.45 2.70 16 5 N -0.60 -16.94 2.46 -826.11 -2.03 -18.97 16 6 C 0.17 3.85 5.38 85.63 0.46 4.31 16 7 C -0.15 -3.48 5.47 -19.77 -0.11 -3.59 16 8 C -0.09 -1.48 9.66 22.25 0.22 -1.26 16 9 C -0.14 -2.12 10.04 22.28 0.22 -1.90 16 10 C -0.10 -1.95 10.04 22.25 0.22 -1.72 16 11 C -0.17 -4.36 9.99 22.37 0.22 -4.13 16 12 C 0.10 2.86 6.68 22.50 0.15 3.01 16 13 O -0.49 -16.94 9.21 -69.34 -0.64 -17.58 16 14 C 0.52 20.85 7.61 87.66 0.67 21.51 16 15 O -0.52 -24.16 12.00 20.12 0.24 -23.92 16 16 C -0.12 -5.26 4.71 71.23 0.34 -4.93 16 17 S -0.14 -8.38 20.57 -56.49 -1.16 -9.55 16 18 C -0.55 -32.53 9.50 67.95 0.65 -31.89 16 19 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 20 C 0.01 0.88 5.49 84.86 0.47 1.35 16 21 N -0.91 -57.29 13.22 21.65 0.29 -57.01 16 22 Si 1.00 44.85 29.55 68.60 2.03 46.88 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.04 7.22 -2.39 -0.02 1.02 16 33 H 0.07 1.60 6.44 -2.38 -0.02 1.58 16 34 H 0.11 1.55 8.07 -2.39 -0.02 1.53 16 35 H 0.07 1.92 7.14 -2.39 -0.02 1.90 16 36 H 0.12 1.76 7.93 -2.39 -0.02 1.74 16 37 H 0.16 1.52 8.04 -2.91 -0.02 1.50 16 38 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 39 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.12 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.39 10.65 9.06 -74.06 -0.67 9.98 16 42 H 0.09 3.73 7.40 -2.40 -0.02 3.72 16 43 H 0.10 3.95 7.18 -2.40 -0.02 3.93 16 44 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -80.86 377.14 4.07 -76.79 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.32 Total: 25.48 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 5.02 Total: -22.13 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -1.74 Total: -75.98 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -0.40 Total: -41.50 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.55 kcal Total: -80.86 4.07 -76.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282503216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.626 kcal (2) G-P(sol) polarization free energy of solvation -80.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds