Wall clock time and date at job start Tue Mar 31 2020 14:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47181 * 2 1 4 4 C 1.52999 * 109.47115 * 239.99802 * 2 1 3 5 5 C 1.50707 * 109.46962 * 59.99956 * 4 2 1 6 6 H 1.08007 * 119.99610 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00207 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00226 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00160 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47064 * 60.00088 * 9 7 5 11 11 H 1.48501 * 109.47256 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46992 * 300.00167 * 9 7 5 13 13 C 1.53006 * 109.47308 * 120.00226 * 2 1 3 14 14 N 1.46902 * 109.46885 * 299.99973 * 13 2 1 15 15 C 1.46900 * 110.99564 * 185.51163 * 14 13 2 16 16 H 1.08994 * 109.18782 * 33.41366 * 15 14 13 17 17 C 1.54258 * 109.19750 * 274.08323 * 15 14 13 18 18 S 1.83522 * 100.55695 * 212.31237 * 17 15 14 19 19 O 1.42102 * 111.53975 * 134.01728 * 18 17 15 20 20 O 1.42109 * 111.53625 * 274.11562 * 18 17 15 21 21 C 1.77608 * 97.19216 * 24.17692 * 18 17 15 22 22 C 1.37972 * 130.66527 * 165.00653 * 21 18 17 23 23 C 1.38211 * 120.22585 * 180.30720 * 22 21 18 24 24 C 1.38260 * 119.13198 * 0.04796 * 23 22 21 25 25 C 1.37599 * 120.44593 * 359.81845 * 24 23 22 26 26 C 1.38254 * 107.83185 * 345.02841 * 21 18 17 27 27 H 1.09004 * 109.47024 * 299.99135 * 1 2 3 28 28 H 1.08997 * 109.47551 * 59.99760 * 1 2 3 29 29 H 1.09001 * 109.46891 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47278 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47428 * 299.99858 * 3 2 1 32 32 H 1.09002 * 109.47164 * 60.00403 * 3 2 1 33 33 H 1.09005 * 109.47412 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47896 * 300.00328 * 4 2 1 35 35 H 0.96996 * 120.00402 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.46914 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.46934 * 59.99795 * 13 2 1 38 38 H 1.00897 * 110.99704 * 61.55432 * 14 13 2 39 39 H 1.09004 * 111.19467 * 330.13778 * 17 15 14 40 40 H 1.08999 * 111.19961 * 94.48138 * 17 15 14 41 41 H 1.07994 * 119.89350 * 0.32977 * 22 21 18 42 42 H 1.07999 * 120.43553 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.77562 * 179.83311 * 24 23 22 44 44 H 1.07994 * 119.46425 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9163 0.8670 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6271 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7995 -5.2566 11 1 1.7438 -0.3007 -6.4697 12 1 -0.2361 0.3995 -5.2576 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.1260 -0.6147 3.6666 16 1 3.1374 -0.9609 3.4541 17 6 1.2623 -1.8134 4.1100 18 16 1.4631 -1.7170 5.9317 19 8 0.2180 -1.8568 6.6020 20 8 2.6309 -2.4013 6.3646 21 6 1.8586 0.0122 6.0206 22 6 1.8789 0.8757 7.0965 23 6 2.2184 2.2033 6.9168 24 6 2.5351 2.6513 5.6477 25 6 2.5162 1.7860 4.5780 26 6 2.1786 0.4394 4.7452 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1300 -0.7209 -1.2495 34 1 1.6766 -1.7490 -1.2493 35 1 2.8620 -1.8818 -4.7337 36 1 3.1301 -0.7217 1.2490 37 1 1.6766 -1.7490 1.2492 38 1 0.5421 -0.0375 2.4849 39 1 0.2203 -1.6768 3.8206 40 1 1.6581 -2.7506 3.7188 41 1 1.6290 0.5129 8.0825 42 1 2.2358 2.8821 7.7567 43 1 2.7993 3.6872 5.4950 44 1 2.7667 2.1527 3.5936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290555738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:26 Heat of formation + Delta-G solvation = -45.296020 kcal Electronic energy + Delta-G solvation = -25401.582417 eV Core-core repulsion = 21831.850760 eV Total energy + Delta-G solvation = -3569.731657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96860 -37.94606 -37.32506 -36.20806 -35.73309 -32.71667 -31.63099 -31.01940 -29.45271 -27.00899 -26.43575 -25.63262 -24.01199 -23.33980 -22.41372 -21.29828 -19.33790 -18.24131 -17.58024 -16.76311 -16.46109 -16.27356 -15.88642 -15.73784 -15.06409 -14.83457 -14.52258 -14.39761 -13.99868 -13.54446 -13.44588 -13.26356 -12.99490 -12.66196 -12.61558 -12.37088 -12.29173 -12.22284 -12.05474 -11.91531 -11.55897 -11.17449 -11.01505 -10.93937 -10.84495 -10.63195 -10.57237 -10.40165 -10.21957 -9.78676 -9.58867 -9.13561 -9.06700 -8.94325 -8.45797 -8.37156 -6.01832 -4.02442 -0.20644 0.59903 1.03197 2.41346 3.19954 3.30664 3.32988 3.35898 3.37643 3.72235 3.88191 4.10128 4.39475 4.45386 4.60038 4.67927 4.74246 4.95016 5.09488 5.21642 5.23730 5.34045 5.44550 5.52744 5.61415 5.65168 5.86169 5.89058 5.99399 6.08722 6.16256 6.18042 6.37597 6.54078 6.58358 6.65933 6.73123 6.92911 7.10263 7.14109 7.21235 7.35612 7.62061 7.76283 7.97577 8.41230 9.02573 9.60839 11.09726 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021828 B = 0.002926 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.449319 B = 9567.040739 C =10332.446936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 C -0.117 4.117 4 C 0.034 3.966 5 C -0.509 4.509 6 H 0.058 0.942 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.064 3.936 14 N -0.665 5.665 15 C 0.119 3.881 16 H 0.118 0.882 17 C -0.606 4.606 18 S 2.471 3.529 19 O -0.936 6.936 20 O -0.929 6.929 21 C -0.632 4.632 22 C -0.007 4.007 23 C -0.136 4.136 24 C -0.077 4.077 25 C -0.089 4.089 26 C -0.023 4.023 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.015 0.985 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.348 0.652 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 4.563 20.636 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.057 4.057 3 C -0.175 4.175 4 C -0.003 4.003 5 C -0.548 4.548 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.296 5.296 15 C 0.007 3.993 16 H 0.136 0.864 17 C -0.738 4.738 18 S 2.652 3.348 19 O -0.933 6.933 20 O -0.926 6.926 21 C -0.720 4.720 22 C -0.026 4.026 23 C -0.155 4.155 24 C -0.095 4.095 25 C -0.108 4.108 26 C -0.025 4.025 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.032 4.275 21.156 21.609 hybrid contribution -0.638 0.292 -1.605 1.752 sum -1.670 4.568 19.551 20.147 Atomic orbital electron populations 1.21783 0.95948 1.00460 1.00582 1.20626 0.94840 0.96141 0.94114 1.21613 0.99762 0.95777 1.00301 1.19121 0.96123 0.94987 0.90101 1.21179 1.30993 1.12003 0.90587 0.92344 1.25007 0.95346 0.95084 0.99073 1.69944 1.37109 1.23141 1.23499 0.86725 0.79157 0.79829 0.82675 1.20297 1.21423 1.20345 1.22294 1.00018 0.95185 0.88876 1.60546 1.13538 1.55683 0.99867 1.20785 0.99944 0.87431 0.91161 0.86408 1.31169 1.10141 1.08093 1.24389 1.06465 0.75088 0.74973 0.78284 1.93595 1.43498 1.85278 1.70885 1.93643 1.48386 1.71648 1.78911 1.30319 1.17208 1.24786 0.99645 1.20182 0.93185 0.92480 0.96789 1.21346 1.00705 0.95695 0.97737 1.21283 0.95692 0.99931 0.92598 1.21055 0.98280 0.91572 0.99908 1.20451 0.94895 0.95824 0.91348 0.94757 0.91622 0.94019 0.94144 0.92591 0.93860 0.96661 0.96881 0.93043 0.91036 0.94996 0.83139 0.83371 0.83082 0.85306 0.84939 0.85133 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 7.88 37.16 0.29 -1.91 16 2 C -0.06 -1.02 0.60 -154.51 -0.09 -1.11 16 3 C -0.12 -2.05 8.06 37.15 0.30 -1.75 16 4 C 0.03 0.81 4.04 -27.88 -0.11 0.70 16 5 C -0.51 -13.37 7.65 -34.44 -0.26 -13.64 16 6 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 13 C 0.06 0.94 4.47 -3.82 -0.02 0.92 16 14 N -0.66 -7.74 5.11 -107.13 -0.55 -8.28 16 15 C 0.12 1.20 2.88 -68.10 -0.20 1.00 16 16 H 0.12 1.14 7.67 -51.93 -0.40 0.74 16 17 C -0.61 -4.98 7.15 37.82 0.27 -4.71 16 18 S 2.47 25.36 6.15 -107.50 -0.66 24.70 16 19 O -0.94 -12.11 18.01 -57.38 -1.03 -13.14 16 20 O -0.93 -12.21 18.02 -57.38 -1.03 -13.24 16 21 C -0.63 -6.71 6.17 -39.67 -0.24 -6.95 16 22 C -0.01 -0.07 10.02 -39.69 -0.40 -0.47 16 23 C -0.14 -1.14 10.10 -39.58 -0.40 -1.54 16 24 C -0.08 -0.66 9.99 -39.81 -0.40 -1.06 16 25 C -0.09 -0.90 9.68 -39.22 -0.38 -1.28 16 26 C -0.02 -0.24 5.69 -103.92 -0.59 -0.84 16 27 H 0.03 0.48 6.70 -51.93 -0.35 0.13 16 28 H 0.06 1.24 6.62 -51.93 -0.34 0.89 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.08 6.62 -51.93 -0.34 0.73 16 32 H 0.04 0.66 7.60 -51.93 -0.39 0.26 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 37 H 0.03 0.46 8.13 -51.93 -0.42 0.04 16 38 H 0.35 3.82 6.42 -39.29 -0.25 3.56 16 39 H 0.15 1.03 7.63 -51.93 -0.40 0.63 16 40 H 0.15 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -33.73 363.51 -10.96 -44.69 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.55 Total: 0.39 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: -2.33 Total: -31.21 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.19 Total: -33.69 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -2.07 Total: -26.39 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 25.36 SS G_CDS: -0.66 Total: 24.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.73 -10.96 -44.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290555738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.608 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds