Wall clock time and date at job start Tue Mar 31 2020 14:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47181 * 2 1 4 4 C 1.52999 * 109.47115 * 239.99802 * 2 1 3 5 5 C 1.50707 * 109.46962 * 59.99956 * 4 2 1 6 6 H 1.08007 * 119.99610 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00207 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00226 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00160 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47064 * 60.00088 * 9 7 5 11 11 H 1.48501 * 109.47256 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46992 * 300.00167 * 9 7 5 13 13 C 1.53006 * 109.47308 * 120.00226 * 2 1 3 14 14 N 1.46902 * 109.46885 * 299.99973 * 13 2 1 15 15 C 1.46900 * 110.99564 * 185.51163 * 14 13 2 16 16 H 1.08994 * 109.18782 * 33.41366 * 15 14 13 17 17 C 1.54258 * 109.19750 * 274.08323 * 15 14 13 18 18 S 1.83522 * 100.55695 * 212.31237 * 17 15 14 19 19 O 1.42102 * 111.53975 * 134.01728 * 18 17 15 20 20 O 1.42109 * 111.53625 * 274.11562 * 18 17 15 21 21 C 1.77608 * 97.19216 * 24.17692 * 18 17 15 22 22 C 1.37972 * 130.66527 * 165.00653 * 21 18 17 23 23 C 1.38211 * 120.22585 * 180.30720 * 22 21 18 24 24 C 1.38260 * 119.13198 * 0.04796 * 23 22 21 25 25 C 1.37599 * 120.44593 * 359.81845 * 24 23 22 26 26 C 1.38254 * 107.83185 * 345.02841 * 21 18 17 27 27 H 1.09004 * 109.47024 * 299.99135 * 1 2 3 28 28 H 1.08997 * 109.47551 * 59.99760 * 1 2 3 29 29 H 1.09001 * 109.46891 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47278 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47428 * 299.99858 * 3 2 1 32 32 H 1.09002 * 109.47164 * 60.00403 * 3 2 1 33 33 H 1.09005 * 109.47412 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47896 * 300.00328 * 4 2 1 35 35 H 0.96996 * 120.00402 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.46914 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.46934 * 59.99795 * 13 2 1 38 38 H 1.00897 * 110.99704 * 61.55432 * 14 13 2 39 39 H 1.09004 * 111.19467 * 330.13778 * 17 15 14 40 40 H 1.08999 * 111.19961 * 94.48138 * 17 15 14 41 41 H 1.07994 * 119.89350 * 0.32977 * 22 21 18 42 42 H 1.07999 * 120.43553 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.77562 * 179.83311 * 24 23 22 44 44 H 1.07994 * 119.46425 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9163 0.8670 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6271 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7995 -5.2566 11 1 1.7438 -0.3007 -6.4697 12 1 -0.2361 0.3995 -5.2576 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.1260 -0.6147 3.6666 16 1 3.1374 -0.9609 3.4541 17 6 1.2623 -1.8134 4.1100 18 16 1.4631 -1.7170 5.9317 19 8 0.2180 -1.8568 6.6020 20 8 2.6309 -2.4013 6.3646 21 6 1.8586 0.0122 6.0206 22 6 1.8789 0.8757 7.0965 23 6 2.2184 2.2033 6.9168 24 6 2.5351 2.6513 5.6477 25 6 2.5162 1.7860 4.5780 26 6 2.1786 0.4394 4.7452 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1300 -0.7209 -1.2495 34 1 1.6766 -1.7490 -1.2493 35 1 2.8620 -1.8818 -4.7337 36 1 3.1301 -0.7217 1.2490 37 1 1.6766 -1.7490 1.2492 38 1 0.5421 -0.0375 2.4849 39 1 0.2203 -1.6768 3.8206 40 1 1.6581 -2.7506 3.7188 41 1 1.6290 0.5129 8.0825 42 1 2.2358 2.8821 7.7567 43 1 2.7993 3.6872 5.4950 44 1 2.7667 2.1527 3.5936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290555738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:25 Heat of formation + Delta-G solvation = -68.187535 kcal Electronic energy + Delta-G solvation = -25402.575068 eV Core-core repulsion = 21831.850760 eV Total energy + Delta-G solvation = -3570.724307 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73272 -39.12773 -38.23756 -37.15697 -36.82211 -34.54430 -32.68554 -31.79895 -30.27153 -28.84151 -27.84428 -26.85684 -25.16082 -24.09618 -23.87312 -22.08436 -20.14385 -19.61606 -18.45793 -18.29261 -17.57543 -17.24021 -16.83543 -16.58164 -16.49005 -15.86814 -15.64328 -15.42272 -15.08898 -14.65305 -14.58518 -14.29988 -14.00325 -13.91024 -13.84052 -13.48638 -13.31440 -13.28257 -13.19591 -12.94502 -12.75868 -12.70996 -12.50665 -12.26606 -12.19550 -12.14493 -11.92237 -11.85158 -11.43956 -11.30185 -10.82895 -10.73232 -10.47968 -10.29511 -9.79097 -9.44721 -8.12697 -6.18907 -0.99397 -0.11751 0.32188 1.42033 1.43120 1.50426 1.64329 2.44373 2.45973 2.59091 2.97652 3.00887 3.21805 3.34110 3.63360 3.87588 3.93731 4.14195 4.18841 4.26885 4.32674 4.39513 4.46496 4.54178 4.57457 4.77774 4.82156 4.84540 4.95860 4.99603 5.12481 5.18649 5.24973 5.27573 5.34396 5.48040 5.56359 5.58935 5.63548 5.67270 5.87266 5.91062 5.95743 5.97251 6.37964 6.40854 6.96859 7.48502 8.99170 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021828 B = 0.002926 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.449319 B = 9567.040739 C =10332.446936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.053 4.053 3 C -0.109 4.109 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.269 1.269 13 C 0.076 3.924 14 N -0.659 5.659 15 C 0.117 3.883 16 H 0.121 0.879 17 C -0.588 4.588 18 S 2.484 3.516 19 O -0.967 6.967 20 O -0.964 6.964 21 C -0.644 4.644 22 C -0.027 4.027 23 C -0.133 4.133 24 C -0.077 4.077 25 C -0.103 4.103 26 C -0.034 4.034 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.071 0.929 33 H -0.015 1.015 34 H -0.014 1.014 35 H 0.259 0.741 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.355 0.645 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.141 0.859 42 H 0.162 0.838 43 H 0.156 0.844 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 6.264 21.575 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.054 4.054 3 C -0.166 4.166 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.194 1.194 13 C -0.053 4.053 14 N -0.291 5.291 15 C 0.006 3.994 16 H 0.139 0.861 17 C -0.722 4.722 18 S 2.669 3.331 19 O -0.964 6.964 20 O -0.961 6.961 21 C -0.732 4.732 22 C -0.046 4.046 23 C -0.152 4.152 24 C -0.095 4.095 25 C -0.122 4.122 26 C -0.036 4.036 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.004 0.996 34 H 0.005 0.995 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.177 0.823 39 H 0.186 0.814 40 H 0.190 0.810 41 H 0.159 0.841 42 H 0.179 0.821 43 H 0.174 0.826 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.994 5.981 22.137 23.017 hybrid contribution -0.319 -0.180 -1.859 1.895 sum -2.313 5.801 20.277 21.217 Atomic orbital electron populations 1.21712 0.94734 1.00600 1.01186 1.20471 0.95751 0.96061 0.93097 1.21526 0.99177 0.95345 1.00572 1.19014 0.94132 0.94085 0.92600 1.21613 1.30117 1.11880 0.91550 0.91719 1.25863 0.95782 0.95883 1.02429 1.70084 1.38869 1.24917 1.24013 0.85707 0.78936 0.78830 0.78822 1.19427 1.21566 1.19370 1.21991 0.99654 0.95057 0.88606 1.60402 1.14025 1.55399 0.99299 1.20825 1.00362 0.87928 0.90335 0.86093 1.31144 1.11278 1.08455 1.21357 1.05893 0.73691 0.74559 0.78984 1.93548 1.44461 1.85808 1.72570 1.93593 1.49460 1.72701 1.80357 1.30286 1.18151 1.24607 1.00185 1.20575 0.93419 0.93296 0.97289 1.21723 0.99297 0.95503 0.98684 1.21635 0.94609 1.00995 0.92248 1.21220 0.98783 0.91689 1.00525 1.20473 0.95663 0.96184 0.91279 0.91200 0.93895 0.94136 0.94987 0.94742 0.90970 0.99645 0.99521 0.93238 0.91576 0.94630 0.82340 0.81412 0.81025 0.84098 0.82057 0.82610 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 7.88 71.98 0.57 -3.43 16 2 C -0.05 -1.87 0.60 -52.18 -0.03 -1.90 16 3 C -0.11 -3.68 8.06 71.98 0.58 -3.10 16 4 C 0.04 1.90 4.04 29.85 0.12 2.02 16 5 C -0.51 -27.25 7.65 25.60 0.20 -27.05 16 6 H 0.06 3.29 5.68 -2.91 -0.02 3.28 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 8 N -0.94 -55.92 13.29 21.44 0.28 -55.64 16 9 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 C 0.08 2.09 4.47 86.30 0.39 2.48 16 14 N -0.66 -13.64 5.11 -492.86 -2.52 -16.15 16 15 C 0.12 2.12 2.88 44.66 0.13 2.24 16 16 H 0.12 2.14 7.67 -2.39 -0.02 2.12 16 17 C -0.59 -8.38 7.15 72.41 0.52 -7.86 16 18 S 2.48 49.08 6.15 -56.49 -0.35 48.73 16 19 O -0.97 -24.56 18.01 -127.80 -2.30 -26.86 16 20 O -0.96 -25.26 18.02 -127.80 -2.30 -27.56 16 21 C -0.64 -12.85 6.17 22.21 0.14 -12.71 16 22 C -0.03 -0.48 10.02 22.20 0.22 -0.26 16 23 C -0.13 -1.87 10.10 22.27 0.22 -1.65 16 24 C -0.08 -1.12 9.99 22.12 0.22 -0.89 16 25 C -0.10 -1.87 9.68 22.50 0.22 -1.65 16 26 C -0.03 -0.65 5.69 -19.41 -0.11 -0.76 16 27 H 0.07 1.73 6.70 -2.39 -0.02 1.71 16 28 H 0.04 1.56 6.62 -2.39 -0.02 1.54 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.03 1.29 6.62 -2.39 -0.02 1.27 16 32 H 0.07 2.01 7.60 -2.39 -0.02 1.99 16 33 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 34 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 35 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.07 1.91 7.91 -2.38 -0.02 1.89 16 37 H 0.04 0.96 8.13 -2.39 -0.02 0.94 16 38 H 0.35 6.55 6.42 -89.70 -0.58 5.98 16 39 H 0.17 1.80 7.63 -2.38 -0.02 1.78 16 40 H 0.17 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 42 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -74.00 363.51 -0.89 -74.89 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.43 Total: 11.40 kcal Atomic # 6 Polarization: -58.06 SS G_CDS: 3.84 Total: -54.23 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -2.23 Total: -71.79 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -4.60 Total: -54.42 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 49.08 SS G_CDS: -0.35 Total: 48.73 kcal Total: -74.00 -0.89 -74.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290555738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.703 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds