Wall clock time and date at job start Tue Mar 31 2020 13:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32574 * 1 3 3 C 1.47812 * 119.99866 * 2 1 4 4 C 1.39533 * 120.14145 * 359.73071 * 3 2 1 5 5 C 1.37974 * 119.85461 * 179.67616 * 4 3 2 6 6 C 1.38340 * 120.14190 * 0.61591 * 5 4 3 7 7 C 1.50700 * 119.85840 * 179.69801 * 6 5 4 8 8 C 1.52998 * 109.47207 * 269.98143 * 7 6 5 9 9 N 1.46498 * 109.47265 * 180.02562 * 8 7 6 10 10 S 1.65597 * 120.00361 * 164.99647 * 9 8 7 11 11 O 1.42102 * 104.27983 * 181.07089 * 10 9 8 12 12 O 1.42100 * 104.27857 * 308.93127 * 10 9 8 13 13 C 1.81403 * 104.44673 * 65.00094 * 10 9 8 14 14 C 1.52999 * 109.47152 * 179.97438 * 13 10 9 15 15 C 1.53003 * 109.47259 * 179.97438 * 14 13 10 16 16 C 1.50698 * 109.46901 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00388 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99691 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00067 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46776 * 90.00550 * 20 18 16 22 22 H 1.48499 * 109.47099 * 210.00077 * 20 18 16 23 23 H 1.48489 * 109.47340 * 330.00707 * 20 18 16 24 24 C 1.38344 * 120.28761 * 359.68068 * 6 5 4 25 25 C 1.37979 * 120.13885 * 359.97438 * 24 6 5 26 26 H 1.08000 * 119.99448 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00021 * 359.72036 * 1 2 3 28 28 H 1.07999 * 120.00051 * 180.02562 * 2 1 3 29 29 H 1.08001 * 120.07159 * 359.96873 * 4 3 2 30 30 H 1.08003 * 119.92936 * 180.31487 * 5 4 3 31 31 H 1.08997 * 109.47064 * 29.98185 * 7 6 5 32 32 H 1.09001 * 109.47396 * 149.98012 * 7 6 5 33 33 H 1.09002 * 109.47141 * 299.99522 * 8 7 6 34 34 H 1.08993 * 109.47440 * 60.00184 * 8 7 6 35 35 H 0.97005 * 120.00255 * 344.99948 * 9 8 7 36 36 H 1.09003 * 109.47269 * 300.00043 * 13 10 9 37 37 H 1.09000 * 109.47276 * 60.00033 * 13 10 9 38 38 H 1.09001 * 109.47614 * 300.00096 * 14 13 10 39 39 H 1.09003 * 109.47388 * 60.00153 * 14 13 10 40 40 H 1.08997 * 109.46953 * 299.99817 * 15 14 13 41 41 H 1.09000 * 109.47164 * 60.00075 * 15 14 13 42 42 H 0.96997 * 119.99387 * 179.97438 * 19 18 16 43 43 H 1.07997 * 119.93064 * 180.02562 * 24 6 5 44 44 H 1.07996 * 120.07071 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 1.3701 2.4902 -0.0057 5 6 2.0658 3.6816 0.0011 6 6 3.4492 3.6782 0.0007 7 6 4.2027 4.9833 0.0012 8 6 4.4577 5.4257 -1.4411 9 7 5.1907 6.6941 -1.4405 10 16 5.9262 7.2260 -2.8256 11 8 6.5458 8.4474 -2.4465 12 8 6.6998 6.1160 -3.2601 13 6 4.5572 7.5365 -3.9744 14 6 5.1143 8.0393 -5.3077 15 6 3.9596 8.3006 -6.2770 16 6 4.5085 8.7952 -7.5904 17 1 5.5743 8.9112 -7.7210 18 6 3.6501 9.0987 -8.6258 19 7 2.3522 8.9570 -8.4670 20 14 4.3304 9.7125 -10.2537 21 1 4.5993 8.5558 -11.1454 22 1 3.3396 10.6130 -10.8962 23 1 5.5928 10.4564 -10.0136 24 6 4.1440 2.4819 0.0001 25 6 3.4601 1.2836 0.0005 26 1 -0.5399 -0.9354 -0.0004 27 1 -0.5400 0.9353 0.0046 28 1 1.8657 -0.9353 -0.0004 29 1 0.2901 2.4942 -0.0106 30 1 1.5293 4.6190 0.0019 31 1 3.6137 5.7427 0.5154 32 1 5.1552 4.8528 0.5150 33 1 5.0468 4.6663 -1.9552 34 1 3.5053 5.5563 -1.9548 35 1 5.2453 7.2224 -0.6288 36 1 4.0027 6.6123 -4.1373 37 1 3.8920 8.2896 -3.5520 38 1 5.6685 8.9637 -5.1446 39 1 5.7797 7.2866 -5.7305 40 1 3.4059 7.3760 -6.4401 41 1 3.2939 9.0532 -5.8545 42 1 1.7483 9.1709 -9.1953 43 1 5.2240 2.4860 0.0001 44 1 4.0036 0.3503 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291641130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:56 Heat of formation + Delta-G solvation = -55.024159 kcal Electronic energy + Delta-G solvation = -23659.544961 eV Core-core repulsion = 20089.391461 eV Total energy + Delta-G solvation = -3570.153500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.80001 -36.95777 -36.43632 -35.73502 -34.66683 -34.49537 -32.18497 -31.56899 -31.10950 -27.81893 -27.75867 -24.07945 -23.72703 -23.07579 -21.86371 -20.66141 -19.98207 -19.20788 -17.53922 -16.91252 -16.67278 -16.37605 -15.92670 -15.72172 -15.37025 -15.00828 -14.68582 -14.46861 -14.26195 -14.08895 -13.58438 -13.47400 -13.32682 -12.60434 -12.52705 -12.30280 -12.15509 -11.96080 -11.89424 -11.78238 -11.77281 -11.69756 -11.29116 -11.19146 -11.10380 -10.92210 -10.84956 -10.54497 -10.42761 -9.95021 -9.72182 -9.32589 -9.22634 -9.08431 -8.42787 -8.40775 -6.05821 -4.08777 0.44609 0.61246 1.13631 2.18368 2.84915 3.30515 3.36578 3.40751 3.58784 3.95092 4.34455 4.39174 4.42379 4.44611 4.56638 4.67593 4.70397 4.73283 4.95743 5.10642 5.13926 5.16595 5.19317 5.24453 5.30686 5.40100 5.45287 5.58464 5.68099 5.77440 5.85015 5.90688 5.96372 6.02159 6.24929 6.27132 6.32291 6.45211 6.46261 6.69147 6.86366 6.89574 7.56933 7.66885 7.92335 8.32831 8.97517 9.55902 11.05442 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012235 B = 0.002410 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.017706 B =11614.026120 C =13308.307111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.118 4.118 3 C -0.065 4.065 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.082 4.082 7 C -0.086 4.086 8 C 0.118 3.882 9 N -1.126 6.126 10 S 2.602 3.398 11 O -0.964 6.964 12 O -0.962 6.962 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.030 3.970 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.112 4.112 25 C -0.106 4.106 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.414 0.586 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.126 0.874 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -14.944 22.162 26.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.136 4.136 3 C -0.065 4.065 4 C -0.130 4.130 5 C -0.129 4.129 6 C -0.083 4.083 7 C -0.125 4.125 8 C -0.008 4.008 9 N -0.884 5.884 10 S 2.698 3.302 11 O -0.954 6.954 12 O -0.952 6.952 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.130 4.130 25 C -0.124 4.124 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.135 0.865 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.248 0.752 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.144 0.856 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.437 -14.940 21.808 26.474 hybrid contribution -0.571 0.474 -0.716 1.032 sum -2.008 -14.466 21.091 25.654 Atomic orbital electron populations 1.24381 0.95722 1.02328 0.99299 1.21819 0.95247 0.95785 1.00713 1.19134 0.93409 0.93160 1.00807 1.21296 0.99918 0.91774 0.99999 1.21021 0.93562 0.98212 1.00154 1.19815 0.93732 0.94654 1.00066 1.20773 1.00806 0.94393 0.96534 1.21299 0.96585 0.85188 0.97728 1.55724 1.72519 1.31589 1.28583 1.05247 0.76497 0.73959 0.74486 1.93578 1.74047 1.46506 1.81285 1.93566 1.66857 1.52949 1.81849 1.30539 1.18579 1.11192 1.13742 1.21500 1.01535 1.00382 0.91123 1.19064 0.91932 0.97305 0.92499 1.21257 0.93401 1.44334 0.97426 0.92359 1.25027 0.94847 0.95576 0.98970 1.69960 1.01975 1.48872 1.32651 0.86548 0.78820 0.78793 0.83611 1.20563 1.21177 1.19745 1.21052 1.00122 0.91798 1.00040 1.21259 0.93264 0.98183 0.99731 0.87772 0.88003 0.86455 0.85716 0.85652 0.90061 0.89968 0.89926 0.91388 0.75207 0.85551 0.85295 0.91553 0.91560 0.96134 0.96127 0.92905 0.85619 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 14.15 28.83 0.41 -0.72 16 2 C -0.12 -0.85 9.91 -37.57 -0.37 -1.22 16 3 C -0.07 -0.56 5.87 -105.02 -0.62 -1.18 16 4 C -0.11 -0.94 9.40 -39.20 -0.37 -1.31 16 5 C -0.11 -0.92 9.68 -39.64 -0.38 -1.30 16 6 C -0.08 -0.68 5.14 -104.55 -0.54 -1.22 16 7 C -0.09 -0.63 5.48 -27.88 -0.15 -0.78 16 8 C 0.12 1.08 6.11 -4.04 -0.02 1.06 16 9 N -1.13 -11.34 5.88 -10.62 -0.06 -11.40 16 10 S 2.60 37.19 5.46 -107.50 -0.59 36.61 16 11 O -0.96 -16.62 18.08 -57.54 -1.04 -17.66 16 12 O -0.96 -16.70 17.50 -57.54 -1.01 -17.70 16 13 C -0.61 -9.23 6.07 37.16 0.23 -9.00 16 14 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 15 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 16 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 20 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 24 C -0.11 -0.94 9.68 -39.64 -0.38 -1.32 16 25 C -0.11 -0.88 9.79 -39.19 -0.38 -1.27 16 26 H 0.10 0.50 8.06 -52.49 -0.42 0.07 16 27 H 0.10 0.59 6.04 -52.49 -0.32 0.27 16 28 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 29 H 0.13 0.84 6.17 -52.49 -0.32 0.52 16 30 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.08 0.55 8.08 -51.93 -0.42 0.14 16 33 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.41 3.31 8.62 -34.46 -0.30 3.01 16 36 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 37 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -35.75 385.06 -11.25 -46.99 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.79 Total: 0.19 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: -3.28 Total: -33.55 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.67 Total: -37.31 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -2.05 Total: -35.36 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 37.19 SS G_CDS: -0.59 Total: 36.61 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.75 -11.25 -46.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291641130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.030 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds