Wall clock time and date at job start Tue Mar 31 2020 14:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99833 * 2 1 4 4 C 1.52996 * 109.46946 * 125.00112 * 3 2 1 5 5 C 1.53005 * 109.47245 * 180.02562 * 4 3 2 6 6 S 1.81399 * 109.47445 * 179.97438 * 5 4 3 7 7 O 1.42104 * 110.53977 * 291.62365 * 6 5 4 8 8 O 1.42102 * 110.53976 * 68.37356 * 6 5 4 9 9 N 1.65593 * 104.45079 * 179.97438 * 6 5 4 10 10 C 1.46499 * 119.99833 * 64.99683 * 9 6 5 11 11 H 1.08997 * 109.47531 * 25.00413 * 10 9 6 12 12 C 1.53005 * 109.47071 * 145.00407 * 10 9 6 13 13 C 1.50705 * 109.46767 * 294.99927 * 12 10 9 14 14 H 1.08000 * 119.99938 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99824 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00230 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99759 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47405 * 60.00267 * 17 15 13 19 19 H 1.48506 * 109.46801 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47136 * 299.99862 * 17 15 13 21 21 C 1.50696 * 109.47460 * 264.99828 * 10 9 6 22 22 C 1.38232 * 120.00431 * 319.73182 * 21 10 9 23 23 C 1.38233 * 120.00426 * 179.80771 * 22 21 10 24 24 C 1.38231 * 119.99762 * 0.39519 * 23 22 21 25 25 C 1.38233 * 120.00289 * 359.85408 * 24 23 22 26 26 C 1.38234 * 120.00089 * 140.00008 * 21 10 9 27 27 H 1.07999 * 120.00222 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99995 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00222 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46980 * 5.00000 * 3 2 1 31 31 H 1.09004 * 109.47113 * 244.99981 * 3 2 1 32 32 H 1.09001 * 109.47372 * 60.00128 * 4 3 2 33 33 H 1.09004 * 109.47108 * 299.99872 * 4 3 2 34 34 H 1.09001 * 109.46962 * 59.99717 * 5 4 3 35 35 H 1.09004 * 109.46832 * 299.99880 * 5 4 3 36 36 H 0.97001 * 120.00285 * 245.00211 * 9 6 5 37 37 H 1.08997 * 109.47198 * 54.99873 * 12 10 9 38 38 H 1.08997 * 109.47284 * 175.00210 * 12 10 9 39 39 H 0.96996 * 120.00216 * 179.97438 * 16 15 13 40 40 H 1.08007 * 119.99636 * 359.97438 * 22 21 10 41 41 H 1.08001 * 120.00092 * 180.23155 * 23 22 21 42 42 H 1.08005 * 120.00230 * 179.83474 * 24 23 22 43 43 H 1.08001 * 119.99995 * 179.97438 * 25 24 23 44 44 H 1.08006 * 120.00229 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7995 2.6584 1.1820 6 16 4.9509 2.6919 2.5834 7 8 4.2395 2.7601 3.8116 8 8 5.9955 1.7475 2.3932 9 7 5.7037 4.1621 2.4647 10 6 4.9321 5.3959 2.6335 11 1 4.0502 5.1927 3.2411 12 6 5.7986 6.4483 3.3283 13 6 6.1246 5.9875 4.7256 14 1 5.7516 5.0388 5.0823 15 6 6.9001 6.7767 5.5484 16 7 7.3549 7.9317 5.1139 17 14 7.3049 6.2052 7.2802 18 1 8.0436 4.9186 7.2169 19 1 8.1458 7.2267 7.9546 20 1 6.0466 6.0165 8.0460 21 6 4.5042 5.9097 1.2830 22 6 5.3782 5.8538 0.2135 23 6 4.9843 6.3214 -1.0262 24 6 3.7192 6.8525 -1.1946 25 6 2.8469 6.9131 -0.1239 26 6 3.2396 6.4420 1.1149 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 3.7400 0.5066 1.0920 33 1 2.4772 1.2356 2.1130 34 1 3.0943 3.4847 1.2718 35 1 4.3573 2.7564 0.2506 36 1 6.6556 4.2064 2.2832 37 1 6.7223 6.5868 2.7665 38 1 5.2562 7.3926 3.3744 39 1 7.9001 8.4870 5.6928 40 1 6.3679 5.4422 0.3459 41 1 5.6659 6.2743 -1.8627 42 1 3.4123 7.2203 -2.1626 43 1 1.8587 7.3284 -0.2554 44 1 2.5580 6.4893 1.9514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292149577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:56 Heat of formation + Delta-G solvation = -47.918783 kcal Electronic energy + Delta-G solvation = -25528.011155 eV Core-core repulsion = 21958.165767 eV Total energy + Delta-G solvation = -3569.845388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.23060 -36.75488 -36.48959 -35.78768 -35.52528 -32.69139 -32.59934 -30.84185 -30.44599 -28.63294 -27.12642 -24.81523 -22.51689 -22.22938 -21.99929 -20.29129 -20.11723 -18.89870 -17.39735 -16.91902 -16.28947 -16.15290 -16.00044 -15.51585 -14.91371 -14.81643 -14.54571 -14.46055 -13.91376 -13.73862 -13.25858 -13.10109 -13.04643 -12.74143 -12.36434 -12.23988 -12.15602 -12.08367 -11.75130 -11.64226 -11.29155 -11.26649 -11.10228 -11.09179 -10.94272 -10.78847 -10.66061 -10.45747 -10.40293 -9.87701 -9.57810 -9.23665 -8.86132 -8.70975 -8.39137 -8.35205 -6.01564 -4.03402 0.57330 1.56588 1.60813 2.02889 3.14195 3.38043 3.40734 3.46623 4.00832 4.05217 4.40224 4.44844 4.48563 4.69832 4.88171 4.99493 5.04785 5.08877 5.09986 5.18511 5.26430 5.35256 5.36185 5.44732 5.60846 5.63701 5.68993 5.72834 5.77471 5.81195 5.93349 6.09971 6.17802 6.34890 6.37010 6.51317 6.59342 6.67252 6.69331 6.94851 7.21567 7.43271 7.57950 7.69414 7.97404 8.34278 9.03708 9.61480 11.09151 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.004543 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.508956 B = 6162.458221 C = 7875.085522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C -0.086 4.086 4 C -0.106 4.106 5 C -0.634 4.634 6 S 2.607 3.393 7 O -0.950 6.950 8 O -0.969 6.969 9 N -1.091 6.091 10 C 0.186 3.814 11 H 0.091 0.909 12 C 0.032 3.968 13 C -0.518 4.518 14 H 0.064 0.936 15 C 0.059 3.941 16 N -0.896 5.896 17 Si 0.890 3.110 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.089 4.089 22 C -0.105 4.105 23 C -0.123 4.123 24 C -0.132 4.132 25 C -0.121 4.121 26 C -0.118 4.118 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.418 0.582 37 H 0.026 0.974 38 H 0.032 0.968 39 H 0.261 0.739 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.707 -8.683 -14.807 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.174 4.174 3 C -0.124 4.124 4 C -0.145 4.145 5 C -0.762 4.762 6 S 2.698 3.302 7 O -0.940 6.940 8 O -0.959 6.959 9 N -0.849 5.849 10 C 0.079 3.921 11 H 0.109 0.891 12 C -0.006 4.006 13 C -0.556 4.556 14 H 0.082 0.918 15 C -0.142 4.142 16 N -0.536 5.536 17 Si 0.718 3.282 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.091 4.091 22 C -0.123 4.123 23 C -0.141 4.141 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.136 4.136 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.253 0.747 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.621 -9.188 -14.025 19.848 hybrid contribution 0.425 0.321 0.201 0.569 sum -10.196 -8.866 -13.825 19.331 Atomic orbital electron populations 1.23876 0.95962 1.01895 1.01425 1.23016 0.96140 0.98589 0.99654 1.20716 0.97897 0.95571 0.98216 1.21239 0.98493 0.94203 1.00555 1.30753 1.16950 1.06128 1.22397 1.05009 0.75360 0.73334 0.76477 1.93615 1.75616 1.85757 1.39028 1.93563 1.53771 1.61221 1.87384 1.55288 1.20014 1.20899 1.88712 1.20117 0.95827 0.85940 0.90187 0.89090 1.19327 0.94194 0.92138 0.94987 1.21199 1.31712 1.05116 0.97600 0.91817 1.24975 0.95909 0.94891 0.98472 1.69948 1.35597 1.11316 1.36693 0.86676 0.78522 0.78363 0.84632 1.20130 1.21417 1.20074 1.20779 0.93621 0.98127 0.96560 1.21011 0.99488 0.99548 0.92276 1.21113 0.96307 0.99352 0.97328 1.21047 0.94453 1.00849 0.98624 1.21060 0.99485 1.00230 0.93123 1.21093 0.96063 0.99162 0.97314 0.88515 0.88526 0.87223 0.90985 0.90571 0.90397 0.90284 0.84985 0.85078 0.74688 0.95548 0.95012 0.92947 0.85963 0.86546 0.86759 0.86500 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 14.32 29.02 0.42 -1.13 16 2 C -0.16 -1.33 9.52 -36.02 -0.34 -1.67 16 3 C -0.09 -0.77 5.66 -27.88 -0.16 -0.92 16 4 C -0.11 -1.11 5.20 -26.73 -0.14 -1.25 16 5 C -0.63 -7.22 5.72 37.16 0.21 -7.00 16 6 S 2.61 41.84 5.44 -107.50 -0.58 41.25 16 7 O -0.95 -18.85 17.39 -57.54 -1.00 -19.85 16 8 O -0.97 -17.71 18.08 -57.54 -1.04 -18.75 16 9 N -1.09 -18.50 4.38 -5.88 -0.03 -18.53 16 10 C 0.19 3.42 2.35 -69.08 -0.16 3.25 16 11 H 0.09 1.69 7.34 -51.93 -0.38 1.31 16 12 C 0.03 0.75 4.55 -27.88 -0.13 0.63 16 13 C -0.52 -14.07 8.84 -34.44 -0.30 -14.38 16 14 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 17 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 C -0.09 -1.37 4.21 -104.63 -0.44 -1.81 16 22 C -0.10 -1.48 9.32 -39.59 -0.37 -1.85 16 23 C -0.12 -1.52 10.05 -39.59 -0.40 -1.91 16 24 C -0.13 -1.53 10.05 -39.59 -0.40 -1.93 16 25 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 26 C -0.12 -1.64 9.67 -39.58 -0.38 -2.02 16 27 H 0.10 0.72 7.84 -52.49 -0.41 0.31 16 28 H 0.10 0.65 8.06 -52.48 -0.42 0.23 16 29 H 0.11 0.84 8.06 -52.49 -0.42 0.41 16 30 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.13 1.42 7.75 -51.92 -0.40 1.01 16 35 H 0.13 1.27 8.14 -51.92 -0.42 0.85 16 36 H 0.42 6.84 8.60 -34.47 -0.30 6.54 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.12 1.65 7.58 -52.48 -0.40 1.25 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.11 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.12 1.59 8.04 -52.48 -0.42 1.17 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -33.76 384.52 -11.14 -44.89 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.91 Total: 5.99 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: -3.09 Total: -32.31 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.71 Total: -43.94 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -2.04 Total: -38.61 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 41.84 SS G_CDS: -0.58 Total: 41.25 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.76 -11.14 -44.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292149577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.027 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds