Wall clock time and date at job start Tue Mar 31 2020 14:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99833 * 2 1 4 4 C 1.52996 * 109.46946 * 125.00112 * 3 2 1 5 5 C 1.53005 * 109.47245 * 180.02562 * 4 3 2 6 6 S 1.81399 * 109.47445 * 179.97438 * 5 4 3 7 7 O 1.42104 * 110.53977 * 291.62365 * 6 5 4 8 8 O 1.42102 * 110.53976 * 68.37356 * 6 5 4 9 9 N 1.65593 * 104.45079 * 179.97438 * 6 5 4 10 10 C 1.46499 * 119.99833 * 64.99683 * 9 6 5 11 11 H 1.08997 * 109.47531 * 25.00413 * 10 9 6 12 12 C 1.53005 * 109.47071 * 145.00407 * 10 9 6 13 13 C 1.50705 * 109.46767 * 294.99927 * 12 10 9 14 14 H 1.08000 * 119.99938 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99824 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00230 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99759 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47405 * 60.00267 * 17 15 13 19 19 H 1.48506 * 109.46801 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47136 * 299.99862 * 17 15 13 21 21 C 1.50696 * 109.47460 * 264.99828 * 10 9 6 22 22 C 1.38232 * 120.00431 * 319.73182 * 21 10 9 23 23 C 1.38233 * 120.00426 * 179.80771 * 22 21 10 24 24 C 1.38231 * 119.99762 * 0.39519 * 23 22 21 25 25 C 1.38233 * 120.00289 * 359.85408 * 24 23 22 26 26 C 1.38234 * 120.00089 * 140.00008 * 21 10 9 27 27 H 1.07999 * 120.00222 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99995 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00222 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46980 * 5.00000 * 3 2 1 31 31 H 1.09004 * 109.47113 * 244.99981 * 3 2 1 32 32 H 1.09001 * 109.47372 * 60.00128 * 4 3 2 33 33 H 1.09004 * 109.47108 * 299.99872 * 4 3 2 34 34 H 1.09001 * 109.46962 * 59.99717 * 5 4 3 35 35 H 1.09004 * 109.46832 * 299.99880 * 5 4 3 36 36 H 0.97001 * 120.00285 * 245.00211 * 9 6 5 37 37 H 1.08997 * 109.47198 * 54.99873 * 12 10 9 38 38 H 1.08997 * 109.47284 * 175.00210 * 12 10 9 39 39 H 0.96996 * 120.00216 * 179.97438 * 16 15 13 40 40 H 1.08007 * 119.99636 * 359.97438 * 22 21 10 41 41 H 1.08001 * 120.00092 * 180.23155 * 23 22 21 42 42 H 1.08005 * 120.00230 * 179.83474 * 24 23 22 43 43 H 1.08001 * 119.99995 * 179.97438 * 25 24 23 44 44 H 1.08006 * 120.00229 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7995 2.6584 1.1820 6 16 4.9509 2.6919 2.5834 7 8 4.2395 2.7601 3.8116 8 8 5.9955 1.7475 2.3932 9 7 5.7037 4.1621 2.4647 10 6 4.9321 5.3959 2.6335 11 1 4.0502 5.1927 3.2411 12 6 5.7986 6.4483 3.3283 13 6 6.1246 5.9875 4.7256 14 1 5.7516 5.0388 5.0823 15 6 6.9001 6.7767 5.5484 16 7 7.3549 7.9317 5.1139 17 14 7.3049 6.2052 7.2802 18 1 8.0436 4.9186 7.2169 19 1 8.1458 7.2267 7.9546 20 1 6.0466 6.0165 8.0460 21 6 4.5042 5.9097 1.2830 22 6 5.3782 5.8538 0.2135 23 6 4.9843 6.3214 -1.0262 24 6 3.7192 6.8525 -1.1946 25 6 2.8469 6.9131 -0.1239 26 6 3.2396 6.4420 1.1149 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 3.7400 0.5066 1.0920 33 1 2.4772 1.2356 2.1130 34 1 3.0943 3.4847 1.2718 35 1 4.3573 2.7564 0.2506 36 1 6.6556 4.2064 2.2832 37 1 6.7223 6.5868 2.7665 38 1 5.2562 7.3926 3.3744 39 1 7.9001 8.4870 5.6928 40 1 6.3679 5.4422 0.3459 41 1 5.6659 6.2743 -1.8627 42 1 3.4123 7.2203 -2.1626 43 1 1.8587 7.3284 -0.2554 44 1 2.5580 6.4893 1.9514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292149577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:55 Heat of formation + Delta-G solvation = -69.152787 kcal Electronic energy + Delta-G solvation = -25528.931931 eV Core-core repulsion = 21958.165767 eV Total energy + Delta-G solvation = -3570.766164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32875 -38.15458 -37.24043 -37.18711 -36.92607 -34.68088 -33.44157 -31.93992 -31.51024 -30.39348 -27.93829 -26.53118 -23.81465 -23.28786 -23.07893 -21.59432 -20.76452 -20.18165 -18.84976 -18.37516 -17.75638 -17.42920 -17.10734 -16.66902 -16.38288 -16.00419 -15.85856 -15.39183 -15.08695 -14.66518 -14.51346 -14.31088 -14.14183 -13.91569 -13.90682 -13.55320 -13.20037 -13.11544 -13.09152 -12.94666 -12.93838 -12.87521 -12.49411 -12.39748 -12.14968 -12.00066 -11.84378 -11.82273 -11.63608 -11.49638 -11.25025 -10.57024 -10.30528 -10.14251 -9.69880 -9.49525 -8.18891 -6.26207 -0.68388 0.53299 0.61925 1.37997 1.39082 1.41979 1.47700 1.83560 2.40843 2.84144 2.99735 3.14964 3.27161 3.54120 3.81751 3.94156 4.07296 4.07921 4.24413 4.27378 4.33727 4.35933 4.41696 4.51139 4.61616 4.63064 4.75316 4.81222 4.86627 4.95604 4.99339 5.09922 5.19824 5.21235 5.28563 5.46194 5.60176 5.68440 5.72764 5.77934 5.81414 5.90631 5.94679 6.19150 6.22728 6.27298 6.88335 7.41568 8.91469 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.004543 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.508956 B = 6162.458221 C = 7875.085522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C -0.082 4.082 4 C -0.115 4.115 5 C -0.597 4.597 6 S 2.602 3.398 7 O -0.998 6.998 8 O -0.997 6.997 9 N -1.097 6.097 10 C 0.201 3.799 11 H 0.081 0.919 12 C 0.039 3.961 13 C -0.529 4.529 14 H 0.053 0.947 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.944 3.056 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.272 1.272 21 C -0.106 4.106 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.130 4.130 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.417 0.583 37 H 0.009 0.991 38 H 0.008 0.992 39 H 0.263 0.737 40 H 0.120 0.880 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.250 -9.033 -17.265 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.188 4.188 3 C -0.120 4.120 4 C -0.154 4.154 5 C -0.731 4.731 6 S 2.700 3.300 7 O -0.988 6.988 8 O -0.987 6.987 9 N -0.854 5.854 10 C 0.093 3.907 11 H 0.099 0.901 12 C 0.001 3.999 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.770 3.230 18 H -0.200 1.200 19 H -0.204 1.204 20 H -0.197 1.197 21 C -0.108 4.108 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.149 4.149 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.176 0.824 36 H 0.252 0.748 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.138 0.862 41 H 0.159 0.841 42 H 0.164 0.836 43 H 0.162 0.838 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.129 -9.534 -16.438 22.543 hybrid contribution 0.825 0.418 0.855 1.259 sum -11.304 -9.116 -15.583 21.300 Atomic orbital electron populations 1.24059 0.95960 1.02655 1.00440 1.23103 0.96466 0.98711 1.00526 1.20697 0.97614 0.96068 0.97638 1.21409 0.99029 0.93495 1.01504 1.30422 1.15469 1.07587 1.19613 1.04922 0.75431 0.72422 0.77210 1.93550 1.76131 1.86054 1.43099 1.93518 1.55504 1.61675 1.88019 1.55187 1.20223 1.20761 1.89209 1.19673 0.94247 0.84846 0.91898 0.90079 1.19119 0.94129 0.92860 0.93822 1.21536 1.31204 1.04540 0.99434 0.92902 1.25714 0.96075 0.95107 1.02020 1.70043 1.36415 1.12253 1.37941 0.85822 0.78455 0.78077 0.80678 1.19959 1.20402 1.19677 1.20440 0.94984 1.00268 0.95104 1.21105 0.99294 1.00203 0.92934 1.21408 0.97199 0.98470 0.97052 1.21462 0.93739 0.99226 0.99792 1.21374 1.00814 0.99263 0.92217 1.21244 0.95603 0.99411 0.98593 0.88139 0.87521 0.86635 0.90518 0.89401 0.89750 0.90668 0.83638 0.82379 0.74790 0.97259 0.97421 0.92848 0.86246 0.84149 0.83613 0.83820 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 14.32 67.78 0.97 -1.67 16 2 C -0.17 -2.50 9.52 25.65 0.24 -2.26 16 3 C -0.08 -1.23 5.66 29.85 0.17 -1.06 16 4 C -0.12 -2.19 5.20 30.59 0.16 -2.03 16 5 C -0.60 -12.52 5.72 71.98 0.41 -12.11 16 6 S 2.60 85.06 5.44 -56.49 -0.31 84.75 16 7 O -1.00 -41.17 17.39 -127.65 -2.22 -43.39 16 8 O -1.00 -37.12 18.08 -127.65 -2.31 -39.43 16 9 N -1.10 -38.49 4.38 -172.53 -0.76 -39.25 16 10 C 0.20 7.61 2.35 44.25 0.10 7.71 16 11 H 0.08 3.17 7.34 -2.39 -0.02 3.15 16 12 C 0.04 1.94 4.55 29.85 0.14 2.08 16 13 C -0.53 -29.87 8.84 25.60 0.23 -29.65 16 14 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 15 C 0.01 0.52 5.46 84.65 0.46 0.98 16 16 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 17 Si 0.94 45.87 29.54 68.60 2.03 47.90 16 18 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 21 C -0.11 -3.22 4.21 -19.87 -0.08 -3.30 16 22 C -0.12 -3.17 9.32 22.27 0.21 -2.96 16 23 C -0.12 -2.66 10.05 22.27 0.22 -2.43 16 24 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 25 C -0.12 -2.48 10.05 22.27 0.22 -2.26 16 26 C -0.13 -3.43 9.67 22.27 0.22 -3.22 16 27 H 0.10 1.27 7.84 -2.91 -0.02 1.24 16 28 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 29 H 0.12 1.53 8.06 -2.91 -0.02 1.50 16 30 H 0.08 1.09 7.79 -2.39 -0.02 1.07 16 31 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.15 2.80 7.75 -2.39 -0.02 2.79 16 35 H 0.16 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.42 14.39 8.60 -96.75 -0.83 13.56 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.12 3.20 7.58 -2.91 -0.02 3.18 16 41 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 42 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 44 H 0.13 3.15 8.04 -2.91 -0.02 3.12 16 Total: -1.00 -74.87 384.52 0.75 -74.12 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.14 Total: 24.78 kcal Atomic # 6 Polarization: -58.22 SS G_CDS: 3.89 Total: -54.33 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -0.47 Total: -94.40 kcal Atomic # 8 Polarization: -78.29 SS G_CDS: -4.53 Total: -82.82 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 85.06 SS G_CDS: -0.31 Total: 84.75 kcal Total: -74.87 0.75 -74.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292149577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.968 kcal (2) G-P(sol) polarization free energy of solvation -74.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds