Wall clock time and date at job start Tue Mar 31 2020 13:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00281 * 2 1 4 4 N 1.46499 * 109.47519 * 124.99851 * 3 2 1 5 5 C 1.46502 * 119.99936 * 275.00195 * 4 3 2 6 6 C 1.50699 * 109.46921 * 274.99453 * 5 4 3 7 7 H 1.07999 * 120.00331 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99749 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99943 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 120.00214 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47218 * 89.99579 * 10 8 6 12 12 H 1.48496 * 109.46754 * 209.99504 * 10 8 6 13 13 H 1.48496 * 109.46937 * 329.99518 * 10 8 6 14 14 S 1.65603 * 119.99996 * 94.99822 * 4 3 2 15 15 O 1.42100 * 106.40287 * 156.46519 * 14 4 3 16 16 O 1.42096 * 106.40064 * 23.54318 * 14 4 3 17 17 C 1.76199 * 107.21663 * 269.99947 * 14 4 3 18 18 C 1.38238 * 119.99596 * 90.00686 * 17 14 4 19 19 C 1.38235 * 120.00108 * 179.97438 * 18 17 14 20 20 C 1.38243 * 119.99617 * 0.02562 * 19 18 17 21 21 C 1.50706 * 119.99586 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47116 * 89.99867 * 21 20 19 23 23 C 1.52996 * 109.47210 * 179.97438 * 22 21 20 24 24 C 1.38233 * 120.00248 * 0.25361 * 20 19 18 25 25 C 1.38234 * 120.00356 * 270.02171 * 17 14 4 26 26 H 1.08006 * 119.99575 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99912 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99706 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47495 * 4.99747 * 3 2 1 30 30 H 1.08997 * 109.47465 * 244.99912 * 3 2 1 31 31 H 1.08996 * 109.47287 * 34.99590 * 5 4 3 32 32 H 1.09001 * 109.46848 * 155.00028 * 5 4 3 33 33 H 0.97000 * 120.00453 * 180.02562 * 9 8 6 34 34 H 1.08000 * 120.00559 * 359.97438 * 18 17 14 35 35 H 1.07999 * 120.00165 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.46646 * 209.99280 * 21 20 19 37 37 H 1.09000 * 109.47248 * 329.99998 * 21 20 19 38 38 H 1.09000 * 109.47214 * 300.00167 * 22 21 20 39 39 H 1.09008 * 109.47142 * 59.99333 * 22 21 20 40 40 H 1.08997 * 109.47037 * 300.00424 * 23 22 21 41 41 H 1.09000 * 109.46839 * 60.00324 * 23 22 21 42 42 H 1.08999 * 109.47114 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.99934 * 179.72684 * 24 20 19 44 44 H 1.07999 * 119.99990 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5285 1.7621 2.4523 6 6 2.5993 3.2646 2.5449 7 1 2.9548 3.8414 1.7039 8 6 2.2090 3.9030 3.7030 9 7 2.2703 5.2142 3.7837 10 14 1.5933 2.9055 5.1575 11 1 2.7381 2.5498 6.0339 12 1 0.6108 3.7091 5.9282 13 1 0.9416 1.6649 4.6664 14 16 4.5713 0.8758 0.9173 15 8 5.3148 1.5045 1.9523 16 8 4.8568 1.0543 -0.4632 17 6 4.6594 -0.8571 1.2237 18 6 4.4747 -1.7525 0.1868 19 6 4.5442 -3.1121 0.4270 20 6 4.7980 -3.5762 1.7042 21 6 4.8733 -5.0584 1.9661 22 6 6.3151 -5.5363 1.7819 23 6 6.3916 -7.0409 2.0485 24 6 4.9770 -2.6809 2.7421 25 6 4.9128 -1.3213 2.5009 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3587 2.1317 0.0895 30 1 2.6214 1.4025 -0.9313 31 1 1.4984 1.4372 2.5982 32 1 3.1614 1.3205 3.2220 33 1 1.9961 5.6634 4.5985 34 1 4.2760 -1.3900 -0.8109 35 1 4.3995 -3.8116 -0.3830 36 1 4.5501 -5.2638 2.9866 37 1 4.2240 -5.5845 1.2664 38 1 6.6384 -5.3307 0.7615 39 1 6.9645 -5.0101 2.4817 40 1 6.0684 -7.2460 3.0690 41 1 5.7423 -7.5673 1.3489 42 1 7.4187 -7.3814 1.9168 43 1 5.1709 -3.0437 3.7408 44 1 5.0565 -0.6217 3.3111 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292578295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:39 Heat of formation + Delta-G solvation = -36.852014 kcal Electronic energy + Delta-G solvation = -25541.939868 eV Core-core repulsion = 21972.574371 eV Total energy + Delta-G solvation = -3569.365497 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.50828 -36.78698 -36.47128 -35.45473 -35.23141 -33.20886 -31.97642 -31.42708 -31.07912 -28.09033 -26.90104 -25.01067 -22.90796 -22.70517 -21.90868 -21.15839 -19.87408 -18.58185 -17.58347 -16.88982 -16.66161 -16.16317 -15.66609 -15.60396 -14.85234 -14.55801 -14.37959 -14.17780 -13.97460 -13.79501 -13.54858 -13.25383 -13.12545 -12.71175 -12.48508 -12.40505 -12.16742 -11.88996 -11.59056 -11.57299 -11.54886 -11.46694 -11.34201 -11.28550 -11.02285 -10.94608 -10.69895 -10.51671 -10.38064 -10.19118 -9.57301 -9.20125 -9.13860 -9.06060 -8.59195 -8.17395 -6.08097 -4.07386 0.70239 1.01574 1.27697 2.46440 3.26938 3.31667 3.33153 3.35715 3.74537 4.28972 4.38428 4.42133 4.49971 4.67150 4.73504 4.87508 4.92355 5.08596 5.13635 5.21723 5.23432 5.28018 5.37158 5.39528 5.47091 5.51272 5.56479 5.62851 5.74814 5.77702 5.92394 5.94308 6.03755 6.11304 6.14304 6.19859 6.34761 6.37793 6.72742 6.79625 6.81683 6.89740 7.08261 7.35331 7.57355 8.48577 8.96900 9.50878 11.05361 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.003995 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.325528 B = 7006.309993 C = 7460.430844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.172 4.172 3 C 0.144 3.856 4 N -0.971 5.971 5 C 0.227 3.773 6 C -0.531 4.531 7 H 0.080 0.920 8 C 0.075 3.925 9 N -0.894 5.894 10 Si 0.868 3.132 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.264 1.264 14 S 2.684 3.316 15 O -0.939 6.939 16 O -0.971 6.971 17 C -0.676 4.676 18 C -0.020 4.020 19 C -0.143 4.143 20 C -0.036 4.036 21 C -0.087 4.087 22 C -0.120 4.120 23 C -0.152 4.152 24 C -0.141 4.141 25 C -0.015 4.015 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.036 0.964 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.129 0.871 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 -22.179 -5.310 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.192 4.192 3 C 0.018 3.982 4 N -0.808 5.808 5 C 0.104 3.896 6 C -0.570 4.570 7 H 0.098 0.902 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.695 3.305 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.189 1.189 14 S 2.772 3.228 15 O -0.929 6.929 16 O -0.962 6.962 17 C -0.761 4.761 18 C -0.039 4.039 19 C -0.162 4.162 20 C -0.037 4.037 21 C -0.124 4.124 22 C -0.158 4.158 23 C -0.210 4.210 24 C -0.159 4.159 25 C -0.034 4.034 26 H 0.119 0.881 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.769 -21.487 -5.392 22.326 hybrid contribution -0.659 -1.153 1.142 1.752 sum 2.110 -22.640 -4.251 23.132 Atomic orbital electron populations 1.23813 0.95809 1.01737 1.00612 1.23526 0.96686 0.99133 0.99832 1.20421 0.93345 0.95497 0.88896 1.57183 1.27286 1.78861 1.17515 1.19478 0.95714 0.96610 0.77813 1.21357 1.44265 0.89552 1.01803 0.90239 1.24839 0.95075 0.94769 0.98113 1.69888 1.47763 1.07715 1.27893 0.86977 0.79359 0.80725 0.83484 1.19751 1.20940 1.18854 1.02280 0.73433 0.73492 0.73546 1.93610 1.68869 1.72574 1.57888 1.93502 1.83675 1.85548 1.33430 1.31473 1.15926 1.27891 1.00780 1.20903 0.92148 0.92943 0.97913 1.21105 1.02984 0.95521 0.96572 1.20166 0.94299 0.95692 0.93515 1.20756 0.97794 0.90984 1.02868 1.21514 0.95726 0.96118 1.02399 1.21783 1.01773 0.95700 1.01711 1.21152 1.02674 0.92984 0.99137 1.21012 0.90920 0.96329 0.95125 0.88079 0.88954 0.87936 0.88548 0.89035 0.94582 0.95284 0.92511 0.84447 0.85481 0.90601 0.90647 0.91672 0.91627 0.92630 0.92673 0.92572 0.85355 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 14.32 29.01 0.42 -1.92 16 2 C -0.17 -2.45 9.84 -36.03 -0.35 -2.80 16 3 C 0.14 2.44 6.12 -5.20 -0.03 2.41 16 4 N -0.97 -19.45 2.75 -116.95 -0.32 -19.77 16 5 C 0.23 5.26 4.17 -5.19 -0.02 5.24 16 6 C -0.53 -14.86 9.94 -34.44 -0.34 -15.21 16 7 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 9 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 10 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 14 S 2.68 52.76 5.65 -107.50 -0.61 52.15 16 15 O -0.94 -21.87 16.25 -57.17 -0.93 -22.80 16 16 O -0.97 -19.67 15.84 -57.17 -0.91 -20.57 16 17 C -0.68 -10.80 5.97 -39.58 -0.24 -11.03 16 18 C -0.02 -0.27 8.89 -39.58 -0.35 -0.62 16 19 C -0.14 -1.62 9.70 -39.58 -0.38 -2.00 16 20 C -0.04 -0.40 5.13 -104.62 -0.54 -0.94 16 21 C -0.09 -0.69 5.35 -27.88 -0.15 -0.84 16 22 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 23 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 24 C -0.14 -1.72 9.70 -39.58 -0.38 -2.11 16 25 C -0.01 -0.22 9.52 -39.58 -0.38 -0.60 16 26 H 0.10 1.29 7.84 -52.48 -0.41 0.87 16 27 H 0.09 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.10 1.34 7.41 -52.48 -0.39 0.96 16 29 H 0.10 1.68 7.76 -51.93 -0.40 1.27 16 30 H 0.09 1.45 6.91 -51.93 -0.36 1.09 16 31 H 0.04 0.81 7.17 -51.93 -0.37 0.43 16 32 H 0.03 0.67 7.04 -51.93 -0.37 0.30 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.14 1.69 7.62 -52.49 -0.40 1.29 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 37 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 44 H 0.14 2.12 7.62 -52.49 -0.40 1.72 16 LS Contribution 379.41 15.07 5.72 5.72 Total: -1.00 -33.67 379.41 -10.49 -44.17 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.91 Total: 1.39 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -2.64 Total: -29.97 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.45 Total: -46.25 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -1.83 Total: -43.37 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Atomic # 16 Polarization: 52.76 SS G_CDS: -0.61 Total: 52.15 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.67 -10.49 -44.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292578295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.317 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds