Wall clock time and date at job start Tue Mar 31 2020 13:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00281 * 2 1 4 4 N 1.46499 * 109.47519 * 124.99851 * 3 2 1 5 5 C 1.46502 * 119.99936 * 275.00195 * 4 3 2 6 6 C 1.50699 * 109.46921 * 274.99453 * 5 4 3 7 7 H 1.07999 * 120.00331 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99749 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99943 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 120.00214 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47218 * 89.99579 * 10 8 6 12 12 H 1.48496 * 109.46754 * 209.99504 * 10 8 6 13 13 H 1.48496 * 109.46937 * 329.99518 * 10 8 6 14 14 S 1.65603 * 119.99996 * 94.99822 * 4 3 2 15 15 O 1.42100 * 106.40287 * 156.46519 * 14 4 3 16 16 O 1.42096 * 106.40064 * 23.54318 * 14 4 3 17 17 C 1.76199 * 107.21663 * 269.99947 * 14 4 3 18 18 C 1.38238 * 119.99596 * 90.00686 * 17 14 4 19 19 C 1.38235 * 120.00108 * 179.97438 * 18 17 14 20 20 C 1.38243 * 119.99617 * 0.02562 * 19 18 17 21 21 C 1.50706 * 119.99586 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47116 * 89.99867 * 21 20 19 23 23 C 1.52996 * 109.47210 * 179.97438 * 22 21 20 24 24 C 1.38233 * 120.00248 * 0.25361 * 20 19 18 25 25 C 1.38234 * 120.00356 * 270.02171 * 17 14 4 26 26 H 1.08006 * 119.99575 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99912 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99706 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47495 * 4.99747 * 3 2 1 30 30 H 1.08997 * 109.47465 * 244.99912 * 3 2 1 31 31 H 1.08996 * 109.47287 * 34.99590 * 5 4 3 32 32 H 1.09001 * 109.46848 * 155.00028 * 5 4 3 33 33 H 0.97000 * 120.00453 * 180.02562 * 9 8 6 34 34 H 1.08000 * 120.00559 * 359.97438 * 18 17 14 35 35 H 1.07999 * 120.00165 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.46646 * 209.99280 * 21 20 19 37 37 H 1.09000 * 109.47248 * 329.99998 * 21 20 19 38 38 H 1.09000 * 109.47214 * 300.00167 * 22 21 20 39 39 H 1.09008 * 109.47142 * 59.99333 * 22 21 20 40 40 H 1.08997 * 109.47037 * 300.00424 * 23 22 21 41 41 H 1.09000 * 109.46839 * 60.00324 * 23 22 21 42 42 H 1.08999 * 109.47114 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.99934 * 179.72684 * 24 20 19 44 44 H 1.07999 * 119.99990 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5285 1.7621 2.4523 6 6 2.5993 3.2646 2.5449 7 1 2.9548 3.8414 1.7039 8 6 2.2090 3.9030 3.7030 9 7 2.2703 5.2142 3.7837 10 14 1.5933 2.9055 5.1575 11 1 2.7381 2.5498 6.0339 12 1 0.6108 3.7091 5.9282 13 1 0.9416 1.6649 4.6664 14 16 4.5713 0.8758 0.9173 15 8 5.3148 1.5045 1.9523 16 8 4.8568 1.0543 -0.4632 17 6 4.6594 -0.8571 1.2237 18 6 4.4747 -1.7525 0.1868 19 6 4.5442 -3.1121 0.4270 20 6 4.7980 -3.5762 1.7042 21 6 4.8733 -5.0584 1.9661 22 6 6.3151 -5.5363 1.7819 23 6 6.3916 -7.0409 2.0485 24 6 4.9770 -2.6809 2.7421 25 6 4.9128 -1.3213 2.5009 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3587 2.1317 0.0895 30 1 2.6214 1.4025 -0.9313 31 1 1.4984 1.4372 2.5982 32 1 3.1614 1.3205 3.2220 33 1 1.9961 5.6634 4.5985 34 1 4.2760 -1.3900 -0.8109 35 1 4.3995 -3.8116 -0.3830 36 1 4.5501 -5.2638 2.9866 37 1 4.2240 -5.5845 1.2664 38 1 6.6384 -5.3307 0.7615 39 1 6.9645 -5.0101 2.4817 40 1 6.0684 -7.2460 3.0690 41 1 5.7423 -7.5673 1.3489 42 1 7.4187 -7.3814 1.9168 43 1 5.1709 -3.0437 3.7408 44 1 5.0565 -0.6217 3.3111 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292578295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:38 Heat of formation + Delta-G solvation = -57.977345 kcal Electronic energy + Delta-G solvation = -25542.855931 eV Core-core repulsion = 21972.574371 eV Total energy + Delta-G solvation = -3570.281560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.45951 -38.38645 -38.00713 -36.90949 -36.11038 -34.96921 -33.67287 -32.24605 -32.06671 -29.93504 -27.63072 -26.54245 -23.95239 -23.80164 -23.45356 -21.87697 -21.03200 -19.94927 -19.20778 -18.75890 -18.25153 -17.51294 -16.74160 -16.58951 -16.15069 -15.84006 -15.57754 -15.37652 -15.24749 -14.68290 -14.59930 -14.51476 -14.44213 -14.09441 -13.85234 -13.52523 -13.40159 -13.28157 -13.17646 -13.03903 -12.93978 -12.50543 -12.41744 -12.38427 -12.18619 -12.13311 -12.05036 -11.89779 -11.70363 -11.57512 -11.51036 -10.78111 -10.31687 -10.13111 -10.05134 -9.80189 -8.28608 -6.34213 -0.63816 -0.20887 0.29614 1.34975 1.37592 1.40263 1.48548 2.08121 2.35238 2.52610 2.82964 3.05071 3.28746 3.68984 3.74719 3.87159 3.92977 4.12927 4.15021 4.21131 4.34628 4.37409 4.39300 4.50010 4.67490 4.70599 4.73028 4.80922 4.90478 4.94096 4.98317 5.00653 5.08087 5.11590 5.14175 5.23216 5.27813 5.28954 5.46677 5.47357 5.52443 5.62794 5.73901 5.86599 5.95799 6.30470 6.68519 7.28451 8.88905 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.003995 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.325528 B = 7006.309993 C = 7460.430844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.185 4.185 3 C 0.138 3.862 4 N -0.979 5.979 5 C 0.237 3.763 6 C -0.541 4.541 7 H 0.030 0.970 8 C 0.010 3.990 9 N -0.947 5.947 10 Si 0.938 3.062 11 H -0.267 1.267 12 H -0.278 1.278 13 H -0.231 1.231 14 S 2.684 3.316 15 O -0.991 6.991 16 O -0.989 6.989 17 C -0.681 4.681 18 C -0.027 4.027 19 C -0.136 4.136 20 C -0.025 4.025 21 C -0.084 4.084 22 C -0.120 4.120 23 C -0.150 4.150 24 C -0.140 4.140 25 C -0.037 4.037 26 H 0.097 0.903 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.268 0.732 34 H 0.146 0.854 35 H 0.163 0.837 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.153 0.847 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 -27.255 -4.864 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.013 3.987 4 N -0.816 5.816 5 C 0.113 3.887 6 C -0.580 4.580 7 H 0.049 0.951 8 C -0.188 4.188 9 N -0.588 5.588 10 Si 0.760 3.240 11 H -0.192 1.192 12 H -0.203 1.203 13 H -0.153 1.153 14 S 2.779 3.221 15 O -0.981 6.981 16 O -0.980 6.980 17 C -0.771 4.771 18 C -0.047 4.047 19 C -0.154 4.154 20 C -0.025 4.025 21 C -0.121 4.121 22 C -0.157 4.157 23 C -0.208 4.208 24 C -0.158 4.158 25 C -0.056 4.056 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.163 0.837 35 H 0.180 0.820 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.171 0.829 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.484 -26.514 -4.995 27.021 hybrid contribution -0.200 0.359 0.881 0.972 sum 1.284 -26.155 -4.114 26.508 Atomic orbital electron populations 1.24054 0.95303 1.02975 0.97954 1.23352 0.97059 0.97921 1.02155 1.20560 0.92987 0.97131 0.88007 1.57079 1.27655 1.79778 1.17113 1.19197 0.96700 0.93164 0.79661 1.21664 1.43602 0.92246 1.00485 0.95142 1.25880 0.95280 0.95941 1.01706 1.70063 1.49544 1.10027 1.29125 0.85856 0.79095 0.80136 0.78896 1.19227 1.20303 1.15345 1.01722 0.72833 0.75018 0.72505 1.93538 1.70207 1.75200 1.59156 1.93461 1.83818 1.86733 1.33952 1.30634 1.19620 1.24508 1.02382 1.21112 0.92179 0.93840 0.97554 1.21495 1.01286 0.94791 0.97846 1.20599 0.91734 0.97319 0.92887 1.20841 0.98443 0.88582 1.04201 1.21507 0.95176 0.96962 1.02103 1.21764 1.02133 0.94685 1.02185 1.21439 1.01759 0.91711 1.00931 1.21076 0.92358 0.97773 0.94424 0.88419 0.86070 0.86357 0.90023 0.88815 0.92807 0.94830 0.92323 0.83652 0.81986 0.89431 0.88796 0.91887 0.92405 0.92234 0.91907 0.92467 0.82911 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 14.32 67.78 0.97 -2.83 16 2 C -0.19 -4.97 9.84 25.64 0.25 -4.72 16 3 C 0.14 4.77 6.12 85.63 0.52 5.30 16 4 N -0.98 -40.44 2.75 -523.93 -1.44 -41.88 16 5 C 0.24 11.16 4.17 85.63 0.36 11.51 16 6 C -0.54 -31.78 9.94 25.60 0.25 -31.52 16 7 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 8 C 0.01 0.58 5.47 84.66 0.46 1.04 16 9 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 10 Si 0.94 42.99 27.47 68.60 1.88 44.88 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 13 H -0.23 -9.26 6.54 99.48 0.65 -8.61 16 14 S 2.68 109.92 5.65 -56.49 -0.32 109.60 16 15 O -0.99 -49.04 16.25 -128.00 -2.08 -51.12 16 16 O -0.99 -41.76 15.84 -128.00 -2.03 -43.79 16 17 C -0.68 -21.39 5.97 22.27 0.13 -21.26 16 18 C -0.03 -0.69 8.89 22.27 0.20 -0.49 16 19 C -0.14 -2.52 9.70 22.27 0.22 -2.31 16 20 C -0.03 -0.45 5.13 -19.86 -0.10 -0.55 16 21 C -0.08 -0.93 5.35 29.85 0.16 -0.77 16 22 C -0.12 -1.32 5.92 30.59 0.18 -1.13 16 23 C -0.15 -1.27 9.91 71.98 0.71 -0.56 16 24 C -0.14 -3.02 9.70 22.27 0.22 -2.80 16 25 C -0.04 -1.07 9.52 22.27 0.21 -0.86 16 26 H 0.10 2.31 7.84 -2.91 -0.02 2.29 16 27 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.12 2.80 7.41 -2.91 -0.02 2.78 16 29 H 0.08 2.98 7.76 -2.39 -0.02 2.97 16 30 H 0.09 3.11 6.91 -2.39 -0.02 3.09 16 31 H 0.05 2.34 7.17 -2.39 -0.02 2.32 16 32 H 0.03 1.56 7.04 -2.39 -0.02 1.54 16 33 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.15 3.33 7.62 -2.91 -0.02 3.30 16 35 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 37 H 0.09 0.77 8.09 -2.39 -0.02 0.75 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.13 3.97 7.62 -2.91 -0.02 3.94 16 Total: -1.00 -77.82 379.41 1.97 -75.85 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.91 Total: 18.45 kcal Atomic # 6 Polarization: -56.69 SS G_CDS: 4.75 Total: -51.94 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -1.14 Total: -101.92 kcal Atomic # 8 Polarization: -90.80 SS G_CDS: -4.11 Total: -94.91 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.88 kcal Atomic # 16 Polarization: 109.92 SS G_CDS: -0.32 Total: 109.60 kcal Total: -77.82 1.97 -75.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292578295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.871 kcal (2) G-P(sol) polarization free energy of solvation -77.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds