Wall clock time and date at job start Tue Mar 31 2020 13:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99787 * 2 1 4 4 N 1.46497 * 109.46937 * 125.00007 * 3 2 1 5 5 C 1.46500 * 120.00194 * 274.99910 * 4 3 2 6 6 C 1.50698 * 109.46980 * 275.00179 * 5 4 3 7 7 H 1.08000 * 120.00441 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00117 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99752 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00375 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46632 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47084 * 119.99590 * 10 8 6 13 13 H 1.48495 * 109.47505 * 240.00302 * 10 8 6 14 14 S 1.65602 * 119.99875 * 94.99941 * 4 3 2 15 15 O 1.42099 * 106.40368 * 156.45693 * 14 4 3 16 16 O 1.42098 * 106.40092 * 23.54010 * 14 4 3 17 17 C 1.76199 * 107.21888 * 270.00079 * 14 4 3 18 18 C 1.38234 * 119.99788 * 269.72664 * 17 14 4 19 19 C 1.38240 * 120.00062 * 180.32474 * 18 17 14 20 20 C 1.38235 * 119.99708 * 359.94741 * 19 18 17 21 21 C 1.50704 * 119.99518 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.46902 * 300.01759 * 21 20 19 23 23 C 1.52995 * 109.47267 * 60.02178 * 21 20 19 24 24 C 1.38234 * 120.00204 * 0.02562 * 20 19 18 25 25 C 1.38230 * 119.99885 * 0.02562 * 24 20 19 26 26 H 1.07997 * 120.00275 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99956 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99956 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47392 * 4.99930 * 3 2 1 30 30 H 1.09001 * 109.46916 * 245.00009 * 3 2 1 31 31 H 1.09003 * 109.46936 * 35.00125 * 5 4 3 32 32 H 1.09003 * 109.47145 * 155.00507 * 5 4 3 33 33 H 0.97000 * 119.99867 * 179.97438 * 9 8 6 34 34 H 1.08001 * 120.00279 * 0.27596 * 18 17 14 35 35 H 1.07997 * 119.99868 * 179.97438 * 19 18 17 36 36 H 1.09007 * 109.46457 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.47212 * 60.00375 * 22 21 20 38 38 H 1.09007 * 109.47020 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47662 * 300.00320 * 22 21 20 40 40 H 1.08994 * 109.47292 * 60.00337 * 23 21 20 41 41 H 1.09007 * 109.47004 * 179.97438 * 23 21 20 42 42 H 1.08995 * 109.46969 * 299.99699 * 23 21 20 43 43 H 1.07992 * 119.99701 * 179.97438 * 24 20 19 44 44 H 1.08000 * 120.00356 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5284 1.7621 2.4523 6 6 2.5991 3.2646 2.5449 7 1 2.9553 3.8414 1.7042 8 6 2.2099 3.9029 3.7034 9 7 1.7765 3.2006 4.7274 10 14 2.2981 5.7653 3.8186 11 1 2.8154 6.3162 2.5403 12 1 0.9412 6.3099 4.0787 13 1 3.2071 6.1502 4.9280 14 16 4.5713 0.8759 0.9173 15 8 5.3147 1.5047 1.9522 16 8 4.8567 1.0545 -0.4632 17 6 4.6594 -0.8570 1.2234 18 6 4.9190 -1.3211 2.4994 19 6 4.9948 -2.6806 2.7384 20 6 4.8100 -3.5759 1.7015 21 6 4.8922 -5.0579 1.9622 22 6 6.2794 -5.4038 2.5069 23 6 3.8281 -5.4552 2.9872 24 6 4.5499 -3.1118 0.4256 25 6 4.4751 -1.7524 0.1865 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.4983 1.4371 2.5982 32 1 3.1613 1.3205 3.2220 33 1 1.5030 3.6496 5.5426 34 1 5.0633 -0.6216 3.3095 35 1 5.1980 -3.0431 3.7352 36 1 4.7214 -5.6003 1.0322 37 1 6.4502 -4.8614 3.4367 38 1 6.3390 -6.4758 2.6950 39 1 7.0375 -5.1207 1.7767 40 1 2.8398 -5.2089 2.5990 41 1 3.8872 -6.5273 3.1753 42 1 3.9989 -4.9128 3.9170 43 1 4.4060 -3.8113 -0.3844 44 1 4.2723 -1.3898 -0.8103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292610164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:42 Heat of formation + Delta-G solvation = -39.012150 kcal Electronic energy + Delta-G solvation = -25767.414652 eV Core-core repulsion = 22197.955484 eV Total energy + Delta-G solvation = -3569.459167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.59487 -36.70294 -36.33052 -35.59627 -35.16413 -33.19642 -31.87787 -31.01625 -30.02229 -27.47355 -27.39567 -24.92885 -23.81318 -22.79133 -22.24889 -20.31948 -19.77826 -18.51061 -17.55096 -16.66509 -16.37976 -16.07795 -15.59493 -15.24683 -14.61343 -14.49376 -14.39022 -13.99920 -13.83424 -13.67033 -13.39123 -13.14096 -12.97311 -12.75051 -12.45123 -12.33338 -12.06985 -11.72331 -11.57417 -11.42992 -11.39405 -11.29026 -11.25078 -11.11580 -10.89994 -10.83490 -10.69643 -10.54021 -10.32532 -10.01024 -9.74123 -9.10848 -9.05794 -8.95683 -8.43831 -8.09177 -6.05595 -4.09358 0.81189 1.11961 1.37752 2.55974 3.31982 3.39706 3.42667 3.45993 3.84980 4.34790 4.41148 4.46586 4.53839 4.77034 4.92379 4.95934 5.09768 5.17226 5.24105 5.29771 5.36291 5.37263 5.45877 5.48963 5.57681 5.63923 5.65769 5.71027 5.79199 5.95498 5.98545 6.01535 6.11389 6.21971 6.26367 6.29175 6.46765 6.48804 6.88452 6.91121 7.00514 7.25615 7.40176 7.59831 7.91944 8.20672 8.93321 9.55754 11.03048 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.004003 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.320098 B = 6993.924767 C = 7303.073885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.170 4.170 3 C 0.145 3.855 4 N -0.976 5.976 5 C 0.257 3.743 6 C -0.527 4.527 7 H 0.062 0.938 8 C 0.063 3.937 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.282 1.282 14 S 2.683 3.317 15 O -0.942 6.942 16 O -0.977 6.977 17 C -0.675 4.675 18 C -0.012 4.012 19 C -0.138 4.138 20 C -0.032 4.032 21 C -0.062 4.062 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.021 4.021 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.263 0.737 34 H 0.142 0.858 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.126 0.874 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 -17.067 -6.681 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.190 4.190 3 C 0.019 3.981 4 N -0.814 5.814 5 C 0.135 3.865 6 C -0.567 4.567 7 H 0.080 0.920 8 C -0.139 4.139 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.208 1.208 14 S 2.772 3.228 15 O -0.932 6.932 16 O -0.967 6.967 17 C -0.759 4.759 18 C -0.031 4.031 19 C -0.157 4.157 20 C -0.032 4.032 21 C -0.081 4.081 22 C -0.202 4.202 23 C -0.203 4.203 24 C -0.163 4.163 25 C -0.040 4.040 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.146 0.854 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.204 -16.514 -6.700 18.107 hybrid contribution -0.349 0.187 0.472 0.616 sum 2.854 -16.327 -6.228 17.706 Atomic orbital electron populations 1.23776 0.95800 1.01629 1.00747 1.23506 0.96666 0.99116 0.99710 1.20384 0.93286 0.95443 0.88974 1.57419 1.26990 1.78754 1.18287 1.19103 0.96317 0.95215 0.75860 1.21526 1.43495 0.91746 0.99927 0.91974 1.24918 0.94973 0.98648 0.95401 1.69932 1.43893 1.35508 1.04098 0.86471 0.77562 0.85270 0.78334 1.19585 1.21016 1.20815 1.02265 0.73641 0.73578 0.73355 1.93601 1.69111 1.72668 1.57838 1.93489 1.83958 1.85652 1.33638 1.31450 1.15844 1.27857 1.00762 1.21022 0.90659 0.96298 0.95127 1.21083 1.02545 0.92896 0.99134 1.20133 0.94298 0.95317 0.93466 1.20239 0.96405 0.91397 1.00011 1.21866 0.95537 1.01384 1.01457 1.21866 0.98369 1.01206 0.98832 1.21106 1.03198 0.95523 0.96513 1.20877 0.92345 0.92935 0.97855 0.89017 0.88202 0.88005 0.88860 0.89390 0.94389 0.94380 0.92771 0.84008 0.85398 0.90251 0.92146 0.92218 0.92432 0.92331 0.92241 0.92102 0.85590 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 14.32 29.01 0.42 -2.07 16 2 C -0.17 -2.56 9.84 -36.03 -0.35 -2.92 16 3 C 0.15 2.53 6.12 -5.19 -0.03 2.50 16 4 N -0.98 -20.16 2.75 -116.95 -0.32 -20.48 16 5 C 0.26 6.35 5.10 -5.19 -0.03 6.32 16 6 C -0.53 -14.59 9.38 -34.44 -0.32 -14.91 16 7 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 10 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 S 2.68 54.06 5.65 -107.50 -0.61 53.45 16 15 O -0.94 -22.36 16.25 -57.17 -0.93 -23.29 16 16 O -0.98 -20.07 15.84 -57.17 -0.91 -20.97 16 17 C -0.67 -11.30 5.97 -39.58 -0.24 -11.54 16 18 C -0.01 -0.19 9.52 -39.58 -0.38 -0.57 16 19 C -0.14 -1.81 8.71 -39.58 -0.34 -2.16 16 20 C -0.03 -0.37 4.78 -104.62 -0.50 -0.87 16 21 C -0.06 -0.55 3.09 -91.77 -0.28 -0.83 16 22 C -0.15 -1.15 9.01 37.16 0.33 -0.82 16 23 C -0.15 -1.20 9.01 37.16 0.33 -0.87 16 24 C -0.14 -1.75 9.67 -39.59 -0.38 -2.13 16 25 C -0.02 -0.30 8.89 -39.59 -0.35 -0.65 16 26 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.10 1.35 7.84 -52.49 -0.41 0.93 16 28 H 0.10 1.43 7.42 -52.49 -0.39 1.04 16 29 H 0.09 1.65 7.76 -51.93 -0.40 1.24 16 30 H 0.09 1.42 6.91 -51.93 -0.36 1.06 16 31 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 32 H 0.04 0.99 7.61 -51.93 -0.40 0.60 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.14 2.33 7.62 -52.49 -0.40 1.93 16 35 H 0.13 1.40 7.10 -52.49 -0.37 1.03 16 36 H 0.08 0.62 7.88 -51.93 -0.41 0.21 16 37 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 38 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 43 H 0.13 1.17 7.95 -52.49 -0.42 0.75 16 44 H 0.14 1.77 7.62 -52.49 -0.40 1.37 16 LS Contribution 378.84 15.07 5.71 5.71 Total: -1.00 -32.50 378.84 -10.37 -42.87 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.80 Total: 1.03 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: -2.23 Total: -29.86 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.41 Total: -45.59 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -1.83 Total: -44.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 54.06 SS G_CDS: -0.61 Total: 53.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.50 -10.37 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292610164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.859 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds