Wall clock time and date at job start Tue Mar 31 2020 13:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99787 * 2 1 4 4 N 1.46497 * 109.46937 * 125.00007 * 3 2 1 5 5 C 1.46500 * 120.00194 * 274.99910 * 4 3 2 6 6 C 1.50698 * 109.46980 * 275.00179 * 5 4 3 7 7 H 1.08000 * 120.00441 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00117 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99752 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00375 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46632 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47084 * 119.99590 * 10 8 6 13 13 H 1.48495 * 109.47505 * 240.00302 * 10 8 6 14 14 S 1.65602 * 119.99875 * 94.99941 * 4 3 2 15 15 O 1.42099 * 106.40368 * 156.45693 * 14 4 3 16 16 O 1.42098 * 106.40092 * 23.54010 * 14 4 3 17 17 C 1.76199 * 107.21888 * 270.00079 * 14 4 3 18 18 C 1.38234 * 119.99788 * 269.72664 * 17 14 4 19 19 C 1.38240 * 120.00062 * 180.32474 * 18 17 14 20 20 C 1.38235 * 119.99708 * 359.94741 * 19 18 17 21 21 C 1.50704 * 119.99518 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.46902 * 300.01759 * 21 20 19 23 23 C 1.52995 * 109.47267 * 60.02178 * 21 20 19 24 24 C 1.38234 * 120.00204 * 0.02562 * 20 19 18 25 25 C 1.38230 * 119.99885 * 0.02562 * 24 20 19 26 26 H 1.07997 * 120.00275 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99956 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99956 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47392 * 4.99930 * 3 2 1 30 30 H 1.09001 * 109.46916 * 245.00009 * 3 2 1 31 31 H 1.09003 * 109.46936 * 35.00125 * 5 4 3 32 32 H 1.09003 * 109.47145 * 155.00507 * 5 4 3 33 33 H 0.97000 * 119.99867 * 179.97438 * 9 8 6 34 34 H 1.08001 * 120.00279 * 0.27596 * 18 17 14 35 35 H 1.07997 * 119.99868 * 179.97438 * 19 18 17 36 36 H 1.09007 * 109.46457 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.47212 * 60.00375 * 22 21 20 38 38 H 1.09007 * 109.47020 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47662 * 300.00320 * 22 21 20 40 40 H 1.08994 * 109.47292 * 60.00337 * 23 21 20 41 41 H 1.09007 * 109.47004 * 179.97438 * 23 21 20 42 42 H 1.08995 * 109.46969 * 299.99699 * 23 21 20 43 43 H 1.07992 * 119.99701 * 179.97438 * 24 20 19 44 44 H 1.08000 * 120.00356 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5284 1.7621 2.4523 6 6 2.5991 3.2646 2.5449 7 1 2.9553 3.8414 1.7042 8 6 2.2099 3.9029 3.7034 9 7 1.7765 3.2006 4.7274 10 14 2.2981 5.7653 3.8186 11 1 2.8154 6.3162 2.5403 12 1 0.9412 6.3099 4.0787 13 1 3.2071 6.1502 4.9280 14 16 4.5713 0.8759 0.9173 15 8 5.3147 1.5047 1.9522 16 8 4.8567 1.0545 -0.4632 17 6 4.6594 -0.8570 1.2234 18 6 4.9190 -1.3211 2.4994 19 6 4.9948 -2.6806 2.7384 20 6 4.8100 -3.5759 1.7015 21 6 4.8922 -5.0579 1.9622 22 6 6.2794 -5.4038 2.5069 23 6 3.8281 -5.4552 2.9872 24 6 4.5499 -3.1118 0.4256 25 6 4.4751 -1.7524 0.1865 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.4983 1.4371 2.5982 32 1 3.1613 1.3205 3.2220 33 1 1.5030 3.6496 5.5426 34 1 5.0633 -0.6216 3.3095 35 1 5.1980 -3.0431 3.7352 36 1 4.7214 -5.6003 1.0322 37 1 6.4502 -4.8614 3.4367 38 1 6.3390 -6.4758 2.6950 39 1 7.0375 -5.1207 1.7767 40 1 2.8398 -5.2089 2.5990 41 1 3.8872 -6.5273 3.1753 42 1 3.9989 -4.9128 3.9170 43 1 4.4060 -3.8113 -0.3844 44 1 4.2723 -1.3898 -0.8103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292610164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:41 Heat of formation + Delta-G solvation = -58.129924 kcal Electronic energy + Delta-G solvation = -25768.243661 eV Core-core repulsion = 22197.955484 eV Total energy + Delta-G solvation = -3570.288176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61484 -38.34941 -37.92520 -36.88873 -36.41341 -35.01615 -33.53941 -32.09960 -31.03324 -29.35032 -27.99216 -26.56672 -24.82769 -24.21699 -23.81739 -21.19879 -20.98902 -19.93878 -19.11628 -18.37173 -18.23258 -17.46128 -16.88200 -16.46790 -16.13398 -15.82158 -15.67056 -15.18949 -14.87257 -14.64470 -14.63819 -14.39664 -14.24317 -14.11908 -13.84089 -13.54215 -13.38252 -13.13415 -13.08928 -12.98801 -12.96400 -12.50841 -12.49944 -12.36425 -12.32150 -12.22974 -12.08950 -11.94803 -11.65832 -11.60408 -11.51156 -10.59627 -10.30282 -10.14241 -10.04897 -9.79890 -8.19859 -6.31452 -0.58693 -0.19217 0.29596 1.37693 1.39187 1.41349 1.53079 2.11222 2.41496 2.53485 2.84511 3.11326 3.32365 3.60042 3.72190 3.92256 3.92490 4.11470 4.16355 4.27750 4.31928 4.38091 4.43175 4.46408 4.74366 4.79260 4.81218 4.88126 4.93841 4.97310 4.98800 5.06013 5.07528 5.10348 5.20792 5.24098 5.30947 5.38159 5.43365 5.55971 5.66886 5.73342 5.81008 5.86005 6.00646 6.10545 6.76715 7.37191 8.88142 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.004003 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.320098 B = 6993.924767 C = 7303.073885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.186 4.186 3 C 0.139 3.861 4 N -0.983 5.983 5 C 0.275 3.725 6 C -0.548 4.548 7 H 0.053 0.947 8 C 0.014 3.986 9 N -0.923 5.923 10 Si 0.956 3.044 11 H -0.269 1.269 12 H -0.270 1.270 13 H -0.279 1.279 14 S 2.686 3.314 15 O -0.991 6.991 16 O -0.987 6.987 17 C -0.682 4.682 18 C -0.037 4.037 19 C -0.138 4.138 20 C -0.022 4.022 21 C -0.059 4.059 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.027 4.027 26 H 0.118 0.882 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.028 0.972 32 H 0.016 0.984 33 H 0.267 0.733 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.165 0.835 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.048 -19.694 -7.670 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C 0.014 3.986 4 N -0.820 5.820 5 C 0.152 3.848 6 C -0.587 4.587 7 H 0.072 0.928 8 C -0.185 4.185 9 N -0.563 5.563 10 Si 0.781 3.219 11 H -0.194 1.194 12 H -0.195 1.195 13 H -0.205 1.205 14 S 2.781 3.219 15 O -0.982 6.982 16 O -0.978 6.978 17 C -0.772 4.772 18 C -0.056 4.056 19 C -0.156 4.156 20 C -0.022 4.022 21 C -0.077 4.077 22 C -0.203 4.203 23 C -0.203 4.203 24 C -0.155 4.155 25 C -0.046 4.046 26 H 0.136 0.864 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.182 0.818 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.668 -19.085 -7.722 20.760 hybrid contribution -0.182 0.836 0.754 1.140 sum 2.486 -18.249 -6.968 19.692 Atomic orbital electron populations 1.24016 0.95363 1.02849 0.98237 1.23386 0.97112 0.98188 1.01914 1.20560 0.93033 0.96896 0.88113 1.57263 1.27499 1.79689 1.17560 1.18600 0.95128 0.93662 0.77420 1.21852 1.43529 0.93382 0.99934 0.92825 1.25718 0.94594 1.03155 0.95079 1.70020 1.44464 1.37264 1.04570 0.85543 0.78165 0.79984 0.78245 1.19373 1.19469 1.20524 1.01658 0.72934 0.74852 0.72434 1.93531 1.70373 1.75106 1.59163 1.93457 1.83966 1.86652 1.33713 1.30717 1.19277 1.25090 1.02164 1.21018 0.92501 0.97629 0.94492 1.21307 1.01858 0.91679 1.00787 1.20594 0.91770 0.97018 0.92851 1.20339 0.97079 0.89002 1.01303 1.21884 0.94758 1.02607 1.01063 1.21882 0.97778 1.02420 0.98264 1.21535 1.01329 0.94924 0.97736 1.21121 0.92179 0.93787 0.97560 0.86384 0.88357 0.86748 0.89797 0.88477 0.95381 0.96633 0.92394 0.85979 0.83502 0.88158 0.92680 0.90320 0.92723 0.92874 0.90307 0.92778 0.81767 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 14.32 67.78 0.97 -3.32 16 2 C -0.19 -5.47 9.84 25.65 0.25 -5.22 16 3 C 0.14 4.94 6.12 85.63 0.52 5.47 16 4 N -0.98 -42.37 2.75 -523.91 -1.44 -43.81 16 5 C 0.28 14.31 5.10 85.63 0.44 14.74 16 6 C -0.55 -31.46 9.38 25.60 0.24 -31.22 16 7 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 8 C 0.01 0.80 5.46 84.66 0.46 1.27 16 9 N -0.92 -54.54 13.29 21.45 0.28 -54.25 16 10 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 14 S 2.69 113.37 5.65 -56.49 -0.32 113.05 16 15 O -0.99 -50.30 16.25 -128.00 -2.08 -52.38 16 16 O -0.99 -41.63 15.84 -128.00 -2.03 -43.66 16 17 C -0.68 -23.24 5.97 22.27 0.13 -23.11 16 18 C -0.04 -1.21 9.52 22.27 0.21 -1.00 16 19 C -0.14 -3.47 8.71 22.27 0.19 -3.28 16 20 C -0.02 -0.45 4.78 -19.86 -0.09 -0.55 16 21 C -0.06 -0.81 3.09 -11.54 -0.04 -0.85 16 22 C -0.15 -1.82 9.01 71.98 0.65 -1.17 16 23 C -0.15 -1.93 9.01 71.98 0.65 -1.28 16 24 C -0.14 -2.85 9.67 22.27 0.22 -2.63 16 25 C -0.03 -0.73 8.89 22.27 0.20 -0.54 16 26 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 27 H 0.10 2.55 7.84 -2.91 -0.02 2.53 16 28 H 0.11 3.05 7.42 -2.91 -0.02 3.03 16 29 H 0.08 3.07 7.76 -2.39 -0.02 3.05 16 30 H 0.10 3.20 6.91 -2.39 -0.02 3.19 16 31 H 0.03 1.49 8.11 -2.39 -0.02 1.47 16 32 H 0.02 0.88 7.61 -2.39 -0.02 0.86 16 33 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.12 4.40 7.62 -2.91 -0.02 4.37 16 35 H 0.15 3.04 7.10 -2.91 -0.02 3.02 16 36 H 0.10 1.03 7.88 -2.38 -0.02 1.01 16 37 H 0.05 0.75 7.39 -2.39 -0.02 0.73 16 38 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.05 0.79 7.39 -2.39 -0.02 0.77 16 43 H 0.16 2.19 7.95 -2.91 -0.02 2.16 16 44 H 0.15 3.58 7.62 -2.91 -0.02 3.56 16 Total: -1.00 -72.33 378.84 2.41 -69.91 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.97 Total: 16.75 kcal Atomic # 6 Polarization: -57.70 SS G_CDS: 5.00 Total: -52.70 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -1.16 Total: -98.06 kcal Atomic # 8 Polarization: -91.93 SS G_CDS: -4.11 Total: -96.04 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 113.37 SS G_CDS: -0.32 Total: 113.05 kcal Total: -72.33 2.41 -69.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292610164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.785 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds