Wall clock time and date at job start Tue Mar 31 2020 13:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99541 * 2 1 4 4 N 1.46501 * 109.46569 * 125.00087 * 3 2 1 5 5 C 1.46502 * 120.00150 * 274.99697 * 4 3 2 6 6 C 1.50700 * 109.46965 * 275.00190 * 5 4 3 7 7 H 1.08001 * 120.00589 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00144 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99918 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00402 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46976 * 89.99980 * 10 8 6 12 12 H 1.48508 * 109.46960 * 210.00063 * 10 8 6 13 13 H 1.48500 * 109.46939 * 329.99813 * 10 8 6 14 14 S 1.65603 * 120.00161 * 95.00184 * 4 3 2 15 15 O 1.42105 * 104.27446 * 333.92483 * 14 4 3 16 16 O 1.42097 * 104.28021 * 206.07040 * 14 4 3 17 17 C 1.81402 * 104.45094 * 89.99464 * 14 4 3 18 18 C 1.50697 * 109.47086 * 180.02562 * 17 14 4 19 19 C 1.38232 * 120.00333 * 90.00241 * 18 17 14 20 20 C 1.38235 * 120.00157 * 180.02562 * 19 18 17 21 21 C 1.38234 * 119.99971 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.00207 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47238 * 89.99764 * 22 21 20 24 24 C 1.38238 * 120.00166 * 0.25709 * 21 20 19 25 25 C 1.38240 * 119.99683 * 269.97544 * 18 17 14 26 26 H 1.07998 * 120.00858 * 359.97438 * 1 2 3 27 27 H 1.08013 * 119.99754 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99963 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47508 * 5.00385 * 3 2 1 30 30 H 1.09002 * 109.47297 * 244.99604 * 3 2 1 31 31 H 1.08992 * 109.46981 * 35.00101 * 5 4 3 32 32 H 1.08995 * 109.47049 * 155.00710 * 5 4 3 33 33 H 0.96995 * 120.00235 * 179.97438 * 9 8 6 34 34 H 1.08995 * 109.47275 * 60.00261 * 17 14 4 35 35 H 1.09003 * 109.47348 * 300.00071 * 17 14 4 36 36 H 1.08000 * 120.00014 * 359.97010 * 19 18 17 37 37 H 1.07999 * 120.00348 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.46456 * 329.99598 * 22 21 20 39 39 H 1.08996 * 109.46822 * 210.00547 * 22 21 20 40 40 H 1.09002 * 109.47153 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.46832 * 60.00314 * 23 22 21 42 42 H 1.09004 * 109.47261 * 300.00295 * 23 22 21 43 43 H 1.08000 * 120.00122 * 179.73027 * 24 21 20 44 44 H 1.07994 * 120.00249 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3319 1.1315 5 6 2.5283 1.7620 2.4523 6 6 2.5990 3.2645 2.5450 7 1 2.9545 3.8414 1.7041 8 6 2.2088 3.9029 3.7031 9 7 1.7754 3.2005 4.7271 10 14 2.2957 5.7653 3.8179 11 1 1.0107 6.3501 3.3573 12 1 2.5439 6.1634 5.2269 13 1 3.4015 6.2630 2.9607 14 16 4.5712 0.8760 0.9174 15 8 4.5314 -0.0148 -0.1891 16 8 4.9847 0.4306 2.2018 17 6 5.4289 2.4102 0.4689 18 6 6.8909 2.1213 0.2449 19 6 7.3417 1.7735 -1.0147 20 6 8.6827 1.5080 -1.2200 21 6 9.5730 1.5909 -0.1657 22 6 11.0349 1.3009 -0.3893 23 6 11.7592 2.5941 -0.7683 24 6 9.1214 1.9340 1.0950 25 6 7.7812 2.2047 1.2991 26 1 -0.5401 0.9352 0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3584 2.1317 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 1.4982 1.4371 2.5982 32 1 3.1612 1.3204 3.2220 33 1 1.5012 3.6495 5.5420 34 1 5.3209 3.1358 1.2750 35 1 4.9948 2.8153 -0.4452 36 1 6.6461 1.7083 -1.8383 37 1 9.0349 1.2359 -2.2040 38 1 11.1420 0.5748 -1.1952 39 1 11.4688 0.8957 0.5247 40 1 12.8165 2.3843 -0.9305 41 1 11.6520 3.3201 0.0376 42 1 11.3251 2.9993 -1.6824 43 1 9.8163 1.9944 1.9195 44 1 7.4291 2.4764 2.2832 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292688757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:30 Heat of formation + Delta-G solvation = -39.891007 kcal Electronic energy + Delta-G solvation = -25316.727708 eV Core-core repulsion = 21747.230431 eV Total energy + Delta-G solvation = -3569.497278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.53519 -36.61673 -36.31925 -35.31132 -34.87415 -33.22500 -31.90744 -31.23741 -30.93814 -27.51221 -26.97060 -24.93235 -23.31634 -22.75702 -22.24423 -20.64797 -19.67038 -18.21311 -16.99887 -16.59684 -16.29963 -16.01345 -15.63705 -15.53043 -15.09594 -14.62604 -14.47554 -13.92334 -13.88463 -13.65175 -13.37970 -13.07125 -13.01161 -12.48707 -12.45252 -12.36387 -12.12622 -11.89943 -11.73028 -11.51150 -11.33358 -11.28131 -11.17830 -11.01301 -10.89843 -10.86860 -10.77131 -10.60678 -10.48012 -10.07753 -9.84627 -9.03626 -8.92447 -8.55127 -8.52153 -8.02741 -6.15177 -4.23472 0.68591 1.40516 1.42321 2.63286 3.21658 3.29064 3.30023 3.43413 3.72071 4.28812 4.34995 4.58368 4.60858 4.75908 4.77889 5.01180 5.03513 5.16575 5.18325 5.30436 5.36292 5.37938 5.45933 5.48197 5.56379 5.68082 5.68565 5.77482 5.81279 5.97078 6.07004 6.09115 6.13506 6.31784 6.38891 6.45857 6.56724 6.57392 6.97685 7.00531 7.08753 7.36174 7.40799 7.62002 7.81120 8.09871 8.81255 9.43258 10.92533 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.004174 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.162982 B = 6706.186927 C = 8329.861371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C 0.156 3.844 4 N -0.981 5.981 5 C 0.243 3.757 6 C -0.549 4.549 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.886 5.886 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.273 1.273 14 S 2.609 3.391 15 O -0.971 6.971 16 O -0.949 6.949 17 C -0.592 4.592 18 C -0.085 4.085 19 C -0.106 4.106 20 C -0.118 4.118 21 C -0.084 4.084 22 C -0.085 4.085 23 C -0.147 4.147 24 C -0.116 4.116 25 C -0.102 4.102 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.265 0.735 34 H 0.152 0.848 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.126 0.874 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.686 -1.736 -11.554 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C 0.030 3.970 4 N -0.818 5.818 5 C 0.121 3.879 6 C -0.589 4.589 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.523 5.523 10 Si 0.720 3.280 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 S 2.701 3.299 15 O -0.961 6.961 16 O -0.940 6.940 17 C -0.718 4.718 18 C -0.087 4.087 19 C -0.125 4.125 20 C -0.136 4.136 21 C -0.085 4.085 22 C -0.122 4.122 23 C -0.204 4.204 24 C -0.134 4.134 25 C -0.120 4.120 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.170 0.830 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.143 0.857 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.935 -2.562 -11.234 16.589 hybrid contribution -0.240 1.902 0.103 1.919 sum 11.695 -0.660 -11.131 16.159 Atomic orbital electron populations 1.23770 0.95800 1.01534 1.01651 1.23440 0.96256 0.99396 0.98704 1.20202 0.93168 0.95605 0.88031 1.57459 1.23951 1.82789 1.17617 1.19253 0.97312 0.94583 0.76752 1.21581 1.45421 0.92061 0.99808 0.92011 1.24953 0.94837 0.98456 0.95490 1.69936 1.42620 1.35659 1.04101 0.86590 0.78514 0.85368 0.77509 1.20506 1.21001 1.19805 1.05046 0.74162 0.76492 0.74202 1.93520 1.86286 1.60548 1.55765 1.93560 1.81974 1.78869 1.39553 1.29834 1.03263 1.25395 1.13298 1.19121 0.92836 1.02209 0.94537 1.21142 0.96102 0.98896 0.96388 1.20973 0.92826 1.01066 0.98738 1.19957 0.95674 0.99254 0.93577 1.20548 0.91124 0.98194 1.02356 1.21750 0.99646 0.97172 1.01821 1.21031 0.95453 1.00201 0.96693 1.21275 0.93142 0.98477 0.99148 0.88435 0.88917 0.87426 0.89534 0.90873 0.94037 0.92724 0.92481 0.83040 0.84850 0.85377 0.85799 0.90994 0.90922 0.92482 0.92480 0.92563 0.85651 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 14.32 29.01 0.42 -2.39 16 2 C -0.16 -2.65 9.84 -36.03 -0.35 -3.00 16 3 C 0.16 2.71 5.70 -5.19 -0.03 2.68 16 4 N -0.98 -20.03 2.68 -116.95 -0.31 -20.35 16 5 C 0.24 5.98 5.41 -5.19 -0.03 5.95 16 6 C -0.55 -14.07 9.38 -34.44 -0.32 -14.39 16 7 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 8 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 10 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 14 S 2.61 51.23 5.35 -107.50 -0.58 50.65 16 15 O -0.97 -19.46 16.99 -57.54 -0.98 -20.44 16 16 O -0.95 -21.98 16.53 -57.54 -0.95 -22.93 16 17 C -0.59 -9.62 6.31 36.00 0.23 -9.40 16 18 C -0.09 -1.33 5.14 -104.63 -0.54 -1.87 16 19 C -0.11 -1.47 9.70 -39.58 -0.38 -1.86 16 20 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16 21 C -0.08 -0.99 5.13 -104.62 -0.54 -1.52 16 22 C -0.08 -0.74 6.07 -27.88 -0.17 -0.91 16 23 C -0.15 -1.14 9.89 37.16 0.37 -0.77 16 24 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 25 C -0.10 -1.53 9.70 -39.58 -0.38 -1.92 16 26 H 0.10 1.38 7.84 -52.49 -0.41 0.97 16 27 H 0.09 1.20 8.06 -52.48 -0.42 0.78 16 28 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 29 H 0.09 1.47 7.76 -51.93 -0.40 1.07 16 30 H 0.07 1.09 7.61 -51.93 -0.40 0.69 16 31 H 0.04 1.08 8.11 -51.93 -0.42 0.66 16 32 H 0.05 1.48 6.82 -51.93 -0.35 1.13 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.15 2.54 8.09 -51.93 -0.42 2.12 16 35 H 0.13 1.81 8.09 -51.92 -0.42 1.39 16 36 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -31.72 386.52 -10.89 -42.61 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.01 Total: 5.03 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: -2.60 Total: -31.40 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.42 Total: -44.64 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.93 Total: -43.37 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 51.23 SS G_CDS: -0.58 Total: 50.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.72 -10.89 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292688757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.719 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds