Wall clock time and date at job start Tue Mar 31 2020 13:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99541 * 2 1 4 4 N 1.46501 * 109.46569 * 125.00087 * 3 2 1 5 5 C 1.46502 * 120.00150 * 274.99697 * 4 3 2 6 6 C 1.50700 * 109.46965 * 275.00190 * 5 4 3 7 7 H 1.08001 * 120.00589 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00144 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99918 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00402 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46976 * 89.99980 * 10 8 6 12 12 H 1.48508 * 109.46960 * 210.00063 * 10 8 6 13 13 H 1.48500 * 109.46939 * 329.99813 * 10 8 6 14 14 S 1.65603 * 120.00161 * 95.00184 * 4 3 2 15 15 O 1.42105 * 104.27446 * 333.92483 * 14 4 3 16 16 O 1.42097 * 104.28021 * 206.07040 * 14 4 3 17 17 C 1.81402 * 104.45094 * 89.99464 * 14 4 3 18 18 C 1.50697 * 109.47086 * 180.02562 * 17 14 4 19 19 C 1.38232 * 120.00333 * 90.00241 * 18 17 14 20 20 C 1.38235 * 120.00157 * 180.02562 * 19 18 17 21 21 C 1.38234 * 119.99971 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.00207 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47238 * 89.99764 * 22 21 20 24 24 C 1.38238 * 120.00166 * 0.25709 * 21 20 19 25 25 C 1.38240 * 119.99683 * 269.97544 * 18 17 14 26 26 H 1.07998 * 120.00858 * 359.97438 * 1 2 3 27 27 H 1.08013 * 119.99754 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99963 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47508 * 5.00385 * 3 2 1 30 30 H 1.09002 * 109.47297 * 244.99604 * 3 2 1 31 31 H 1.08992 * 109.46981 * 35.00101 * 5 4 3 32 32 H 1.08995 * 109.47049 * 155.00710 * 5 4 3 33 33 H 0.96995 * 120.00235 * 179.97438 * 9 8 6 34 34 H 1.08995 * 109.47275 * 60.00261 * 17 14 4 35 35 H 1.09003 * 109.47348 * 300.00071 * 17 14 4 36 36 H 1.08000 * 120.00014 * 359.97010 * 19 18 17 37 37 H 1.07999 * 120.00348 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.46456 * 329.99598 * 22 21 20 39 39 H 1.08996 * 109.46822 * 210.00547 * 22 21 20 40 40 H 1.09002 * 109.47153 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.46832 * 60.00314 * 23 22 21 42 42 H 1.09004 * 109.47261 * 300.00295 * 23 22 21 43 43 H 1.08000 * 120.00122 * 179.73027 * 24 21 20 44 44 H 1.07994 * 120.00249 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3319 1.1315 5 6 2.5283 1.7620 2.4523 6 6 2.5990 3.2645 2.5450 7 1 2.9545 3.8414 1.7041 8 6 2.2088 3.9029 3.7031 9 7 1.7754 3.2005 4.7271 10 14 2.2957 5.7653 3.8179 11 1 1.0107 6.3501 3.3573 12 1 2.5439 6.1634 5.2269 13 1 3.4015 6.2630 2.9607 14 16 4.5712 0.8760 0.9174 15 8 4.5314 -0.0148 -0.1891 16 8 4.9847 0.4306 2.2018 17 6 5.4289 2.4102 0.4689 18 6 6.8909 2.1213 0.2449 19 6 7.3417 1.7735 -1.0147 20 6 8.6827 1.5080 -1.2200 21 6 9.5730 1.5909 -0.1657 22 6 11.0349 1.3009 -0.3893 23 6 11.7592 2.5941 -0.7683 24 6 9.1214 1.9340 1.0950 25 6 7.7812 2.2047 1.2991 26 1 -0.5401 0.9352 0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3584 2.1317 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 1.4982 1.4371 2.5982 32 1 3.1612 1.3204 3.2220 33 1 1.5012 3.6495 5.5420 34 1 5.3209 3.1358 1.2750 35 1 4.9948 2.8153 -0.4452 36 1 6.6461 1.7083 -1.8383 37 1 9.0349 1.2359 -2.2040 38 1 11.1420 0.5748 -1.1952 39 1 11.4688 0.8957 0.5247 40 1 12.8165 2.3843 -0.9305 41 1 11.6520 3.3201 0.0376 42 1 11.3251 2.9993 -1.6824 43 1 9.8163 1.9944 1.9195 44 1 7.4291 2.4764 2.2832 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292688757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:29 Heat of formation + Delta-G solvation = -57.963851 kcal Electronic energy + Delta-G solvation = -25317.511406 eV Core-core repulsion = 21747.230431 eV Total energy + Delta-G solvation = -3570.280975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.53128 -38.21398 -37.92126 -36.94583 -35.78732 -35.00635 -33.54502 -32.19796 -31.94436 -29.34203 -28.00786 -26.53300 -24.38139 -23.85635 -23.76827 -21.60472 -21.00031 -19.77725 -18.68509 -18.35303 -17.69319 -17.49434 -16.84206 -16.72290 -16.31960 -16.12610 -15.91920 -15.23068 -14.78290 -14.65901 -14.59273 -14.36026 -14.21861 -13.98782 -13.77378 -13.57517 -13.44275 -13.39225 -13.15929 -13.04181 -12.92389 -12.71978 -12.45017 -12.37524 -12.29369 -12.15340 -12.02275 -11.89260 -11.72228 -11.68126 -11.63187 -10.59010 -10.31829 -9.94694 -9.87901 -9.44002 -8.17621 -6.33260 -0.78857 0.33218 0.38589 1.32306 1.43626 1.44338 1.54179 1.91004 2.41344 2.67611 2.89126 3.13835 3.18899 3.41382 3.75648 3.87489 3.94266 4.03866 4.06006 4.16124 4.35922 4.39345 4.44463 4.53137 4.55790 4.63379 4.70647 4.78391 4.94587 5.01695 5.04959 5.07875 5.10686 5.14856 5.30923 5.37507 5.42056 5.44721 5.49363 5.63858 5.70619 5.75974 5.79567 5.99172 6.00709 6.08086 6.80009 7.37870 8.90586 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.004174 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.162982 B = 6706.186927 C = 8329.861371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.189 4.189 3 C 0.148 3.852 4 N -0.987 5.987 5 C 0.260 3.740 6 C -0.552 4.552 7 H 0.078 0.922 8 C 0.011 3.989 9 N -0.928 5.928 10 Si 0.960 3.040 11 H -0.271 1.271 12 H -0.287 1.287 13 H -0.260 1.260 14 S 2.605 3.395 15 O -0.979 6.979 16 O -0.997 6.997 17 C -0.566 4.566 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.079 4.079 22 C -0.084 4.084 23 C -0.145 4.145 24 C -0.124 4.124 25 C -0.125 4.125 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.266 0.734 34 H 0.145 0.855 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.145 0.855 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.177 -0.468 -13.992 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.209 4.209 3 C 0.023 3.977 4 N -0.824 5.824 5 C 0.137 3.863 6 C -0.591 4.591 7 H 0.096 0.904 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.784 3.216 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.184 1.184 14 S 2.703 3.297 15 O -0.969 6.969 16 O -0.987 6.987 17 C -0.696 4.696 18 C -0.117 4.117 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.080 4.080 22 C -0.122 4.122 23 C -0.202 4.202 24 C -0.142 4.142 25 C -0.144 4.144 26 H 0.124 0.876 27 H 0.131 0.869 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.163 0.837 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.173 0.827 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.162 0.838 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.389 -1.339 -13.692 19.198 hybrid contribution -0.607 1.441 0.786 1.750 sum 12.782 0.101 -12.906 18.165 Atomic orbital electron populations 1.24021 0.95199 1.02923 0.98646 1.23422 0.97080 0.98841 1.01512 1.20461 0.93262 0.96087 0.87851 1.57318 1.25113 1.82981 1.16944 1.18730 0.95221 0.94256 0.78141 1.21936 1.44438 0.92503 1.00187 0.90384 1.25853 0.94563 1.03262 0.95185 1.70081 1.44099 1.37698 1.04805 0.85530 0.79080 0.79564 0.77396 1.19660 1.21316 1.18355 1.04982 0.73884 0.77618 0.73248 1.93493 1.86337 1.61914 1.55198 1.93496 1.82542 1.80712 1.41982 1.29518 1.03874 1.21832 1.14410 1.19197 0.92116 1.04660 0.95755 1.21437 0.97450 0.98456 0.96006 1.21386 0.92136 0.99974 1.00272 1.20393 0.97454 0.97245 0.92882 1.20640 0.88937 0.99115 1.03466 1.21738 1.00581 0.96385 1.01488 1.21318 0.94826 0.99857 0.98152 1.21410 0.94501 0.99704 0.98823 0.87593 0.86916 0.88364 0.89249 0.88282 0.96285 0.96358 0.92514 0.83690 0.81744 0.83780 0.82742 0.89449 0.90088 0.90775 0.93151 0.92612 0.83770 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.86 14.32 67.78 0.97 -3.89 16 2 C -0.19 -6.31 9.84 25.65 0.25 -6.06 16 3 C 0.15 5.10 5.70 85.63 0.49 5.59 16 4 N -0.99 -41.21 2.68 -523.93 -1.41 -42.62 16 5 C 0.26 13.34 5.41 85.63 0.46 13.81 16 6 C -0.55 -28.54 9.38 25.60 0.24 -28.30 16 7 H 0.08 3.69 7.81 -2.91 -0.02 3.67 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -53.94 13.29 21.45 0.28 -53.65 16 10 Si 0.96 41.51 29.54 68.60 2.03 43.54 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 14 S 2.60 104.64 5.35 -56.49 -0.30 104.33 16 15 O -0.98 -39.41 16.99 -127.65 -2.17 -41.58 16 16 O -1.00 -48.80 16.53 -127.65 -2.11 -50.91 16 17 C -0.57 -18.11 6.31 71.23 0.45 -17.66 16 18 C -0.12 -3.53 5.14 -19.87 -0.10 -3.63 16 19 C -0.11 -2.95 9.70 22.27 0.22 -2.73 16 20 C -0.12 -2.57 9.70 22.27 0.22 -2.35 16 21 C -0.08 -1.67 5.13 -19.86 -0.10 -1.77 16 22 C -0.08 -1.20 6.07 29.85 0.18 -1.02 16 23 C -0.14 -1.80 9.89 71.98 0.71 -1.09 16 24 C -0.12 -3.04 9.70 22.27 0.22 -2.82 16 25 C -0.13 -3.80 9.70 22.27 0.22 -3.58 16 26 H 0.11 2.84 7.84 -2.91 -0.02 2.82 16 27 H 0.11 2.73 8.06 -2.90 -0.02 2.71 16 28 H 0.10 3.43 8.06 -2.91 -0.02 3.41 16 29 H 0.09 2.98 7.76 -2.39 -0.02 2.97 16 30 H 0.10 2.82 7.61 -2.39 -0.02 2.80 16 31 H 0.02 1.04 8.11 -2.39 -0.02 1.02 16 32 H 0.02 1.07 6.82 -2.39 -0.02 1.05 16 33 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.14 4.87 8.09 -2.39 -0.02 4.85 16 35 H 0.16 4.11 8.09 -2.39 -0.02 4.09 16 36 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 39 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 44 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -70.50 386.52 2.16 -68.34 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.96 Total: 27.01 kcal Atomic # 6 Polarization: -59.33 SS G_CDS: 4.88 Total: -54.45 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -1.12 Total: -96.27 kcal Atomic # 8 Polarization: -88.22 SS G_CDS: -4.28 Total: -92.50 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: 104.64 SS G_CDS: -0.30 Total: 104.33 kcal Total: -70.50 2.16 -68.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292688757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.376 kcal (2) G-P(sol) polarization free energy of solvation -70.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds