Wall clock time and date at job start Tue Mar 31 2020 14:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47474 * 2 1 4 4 C 1.52993 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47378 * 54.99908 * 4 3 2 6 6 O 1.42903 * 109.47372 * 294.99367 * 4 3 2 7 7 C 1.42901 * 114.00229 * 150.00032 * 6 4 3 8 8 C 1.50705 * 109.46961 * 174.99998 * 4 3 2 9 9 O 1.21295 * 120.00054 * 114.99606 * 8 4 3 10 10 N 1.34776 * 120.00105 * 294.99823 * 8 4 3 11 11 C 1.40135 * 120.00206 * 184.46950 * 10 8 4 12 12 C 1.38643 * 120.10164 * 325.32777 * 11 10 8 13 13 C 1.38249 * 120.01098 * 179.97438 * 12 11 10 14 14 C 1.38304 * 120.20988 * 359.97438 * 13 12 11 15 15 C 1.38190 * 120.19908 * 0.02562 * 14 13 12 16 16 C 1.38787 * 119.98794 * 359.97438 * 15 14 13 17 17 S 1.76206 * 120.10496 * 180.02562 * 16 15 14 18 18 C 1.81398 * 102.99676 * 0.02562 * 17 16 15 19 19 C 1.50706 * 109.47045 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99564 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00000 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99715 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00086 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46656 * 90.00257 * 23 21 19 25 25 H 1.48490 * 109.47155 * 210.00219 * 23 21 19 26 26 H 1.48501 * 109.47289 * 330.00565 * 23 21 19 27 27 H 1.09000 * 109.46682 * 59.99553 * 1 2 3 28 28 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46809 * 300.00619 * 1 2 3 30 30 H 1.08997 * 109.47211 * 239.99943 * 2 1 3 31 31 H 1.09003 * 109.47404 * 119.99896 * 2 1 3 32 32 H 1.08997 * 109.46948 * 59.99782 * 3 2 1 33 33 H 1.08997 * 109.46801 * 299.99886 * 3 2 1 34 34 H 1.09003 * 109.47064 * 300.01108 * 7 6 4 35 35 H 1.09005 * 109.46724 * 60.00321 * 7 6 4 36 36 H 1.08990 * 109.47269 * 180.02562 * 7 6 4 37 37 H 0.97005 * 119.99288 * 4.46754 * 10 8 4 38 38 H 1.08000 * 119.99553 * 359.97438 * 12 11 10 39 39 H 1.08004 * 119.89365 * 180.02562 * 13 12 11 40 40 H 1.07995 * 119.89578 * 180.27529 * 14 13 12 41 41 H 1.07997 * 120.00926 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47522 * 300.00069 * 18 17 16 43 43 H 1.09001 * 109.47215 * 60.00366 * 18 17 16 44 44 H 0.97003 * 119.99248 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 8 4.0469 0.8729 1.2202 7 6 5.3064 0.2089 1.0989 8 6 4.0724 2.8578 -0.1245 9 8 4.6935 3.3629 0.7868 10 7 3.8316 3.5625 -1.2478 11 6 4.3777 4.8439 -1.4018 12 6 4.5190 5.6763 -0.3021 13 6 5.0585 6.9398 -0.4560 14 6 5.4593 7.3779 -1.7051 15 6 5.3224 6.5554 -2.8071 16 6 4.7819 5.2854 -2.6620 17 16 4.6066 4.2339 -4.0650 18 6 5.2605 5.2482 -5.4193 19 6 5.1789 4.4752 -6.7104 20 1 4.7737 3.4741 -6.7157 21 6 5.6215 5.0461 -7.8849 22 7 5.5497 4.3717 -9.0117 23 14 6.3216 6.7779 -7.8757 24 1 7.7870 6.7181 -7.6432 25 1 6.0542 7.4268 -9.1843 26 1 5.6803 7.5655 -6.7924 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 5.2210 -0.6032 0.3768 35 1 6.0603 0.9192 0.7593 36 1 5.5985 -0.1959 2.0677 37 1 3.2802 3.1827 -1.9497 38 1 4.2076 5.3376 0.6750 39 1 5.1681 7.5865 0.4020 40 1 5.8842 8.3642 -1.8188 41 1 5.6368 6.9005 -3.7810 42 1 4.6732 6.1624 -5.5050 43 1 6.3003 5.5023 -5.2136 44 1 5.8608 4.7736 -9.8379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294577549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:25 Heat of formation + Delta-G solvation = -69.711956 kcal Electronic energy + Delta-G solvation = -24667.536508 eV Core-core repulsion = 21096.746097 eV Total energy + Delta-G solvation = -3570.790411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69208 -38.81876 -37.42405 -35.22599 -34.54768 -33.21623 -30.98828 -30.76156 -29.43656 -28.95509 -26.57345 -25.01409 -23.20922 -22.80128 -21.92908 -21.48428 -20.26957 -18.24070 -17.51740 -17.20255 -16.75876 -16.55579 -15.74615 -15.21043 -15.12018 -14.97434 -14.81087 -14.34485 -14.01846 -13.76900 -13.58112 -13.45569 -13.35191 -13.22125 -12.68880 -12.61352 -12.48755 -12.31680 -11.89548 -11.68532 -11.44686 -11.32141 -11.29035 -10.95292 -10.88076 -10.65145 -10.61625 -10.32572 -10.23659 -9.82595 -9.44163 -9.34517 -9.25577 -8.83054 -8.19942 -6.78471 -6.31970 -4.36350 1.35717 1.53628 2.17212 2.49233 2.89090 3.12334 3.19240 3.20583 3.34712 3.53797 3.92883 4.18994 4.33631 4.56187 4.65391 4.82721 4.92627 4.99348 5.10893 5.13880 5.18955 5.22219 5.32993 5.34235 5.43358 5.52166 5.54969 5.60094 5.66387 5.67370 5.83797 5.93463 6.04221 6.06630 6.32993 6.38075 6.39639 6.47664 6.56612 6.69535 6.76437 7.13739 7.24096 7.36634 8.04480 8.13101 8.67351 9.22763 10.79599 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.003402 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.705220 B = 8228.255923 C = 9537.523945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.114 4.114 4 C 0.076 3.924 5 H 0.093 0.907 6 O -0.355 6.355 7 C 0.027 3.973 8 C 0.491 3.509 9 O -0.511 6.511 10 N -0.661 5.661 11 C 0.148 3.852 12 C -0.105 4.105 13 C -0.123 4.123 14 C -0.114 4.114 15 C -0.121 4.121 16 C -0.099 4.099 17 S -0.128 6.128 18 C 0.032 3.968 19 C -0.522 4.522 20 H 0.085 0.915 21 C 0.084 3.916 22 N -0.886 5.886 23 Si 0.876 3.124 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.265 1.265 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.413 0.587 38 H 0.138 0.862 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.129 0.871 42 H 0.044 0.956 43 H 0.039 0.961 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 -4.053 18.359 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.152 4.152 4 C 0.014 3.986 5 H 0.111 0.889 6 O -0.272 6.272 7 C -0.069 4.069 8 C 0.277 3.723 9 O -0.385 6.385 10 N -0.308 5.308 11 C 0.048 3.952 12 C -0.126 4.126 13 C -0.145 4.145 14 C -0.134 4.134 15 C -0.146 4.146 16 C -0.215 4.215 17 S 0.119 5.881 18 C -0.116 4.116 19 C -0.561 4.561 20 H 0.103 0.897 21 C -0.121 4.121 22 N -0.523 5.523 23 Si 0.702 3.298 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.189 1.189 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.250 0.750 38 H 0.156 0.844 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.725 -4.951 18.805 20.271 hybrid contribution 0.993 2.055 -0.791 2.415 sum -4.732 -2.897 18.014 18.849 Atomic orbital electron populations 1.21770 0.95472 1.01803 1.01999 1.21483 0.96079 0.95554 1.02766 1.21727 0.90570 0.99089 1.03814 1.22102 0.96327 0.90390 0.89746 0.88934 1.87977 1.36857 1.72123 1.30210 1.22892 0.85391 0.95860 1.02769 1.21570 0.79868 0.88894 0.81921 1.90690 1.39112 1.70509 1.38167 1.43557 1.51145 1.15370 1.20769 1.17163 1.00374 0.85125 0.92588 1.21124 1.00371 0.92835 0.98294 1.20959 1.00582 0.95766 0.97186 1.21031 1.00373 0.99515 0.92477 1.21136 1.00832 0.92889 0.99770 1.22006 1.03072 0.99185 0.97198 1.85154 1.78924 1.25340 0.98707 1.21730 0.98213 0.97272 0.94340 1.20379 1.44268 1.03004 0.88413 0.89707 1.24821 0.94670 0.97754 0.94903 1.69851 1.45886 1.37633 0.98921 0.86837 0.80120 0.84635 0.78205 1.19689 1.20581 1.18920 0.92508 0.92587 0.92680 0.91740 0.91022 0.90210 0.89896 0.93713 0.93533 0.89199 0.74997 0.84408 0.85998 0.86072 0.85303 0.93822 0.94304 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -0.93 5.83 -26.73 -0.16 -1.08 16 3 C -0.11 -1.00 4.89 -26.73 -0.13 -1.13 16 4 C 0.08 0.82 2.52 -27.88 -0.07 0.75 16 5 H 0.09 0.85 7.79 -51.93 -0.40 0.45 16 6 O -0.35 -4.19 9.42 -55.09 -0.52 -4.71 16 7 C 0.03 0.26 10.81 101.05 1.09 1.36 16 8 C 0.49 6.83 6.98 -10.98 -0.08 6.76 16 9 O -0.51 -8.70 13.93 -14.32 -0.20 -8.90 16 10 N -0.66 -9.27 4.95 -9.71 -0.05 -9.32 16 11 C 0.15 2.41 6.32 -83.43 -0.53 1.88 16 12 C -0.10 -1.62 8.70 -39.43 -0.34 -1.97 16 13 C -0.12 -1.72 10.04 -39.55 -0.40 -2.11 16 14 C -0.11 -1.64 10.04 -39.57 -0.40 -2.04 16 15 C -0.12 -2.06 9.36 -39.40 -0.37 -2.43 16 16 C -0.10 -1.77 6.12 -38.90 -0.24 -2.01 16 17 S -0.13 -2.52 20.72 -107.50 -2.23 -4.74 16 18 C 0.03 0.74 3.16 36.01 0.11 0.85 16 19 C -0.52 -14.10 9.68 -34.44 -0.33 -14.43 16 20 H 0.08 2.49 7.96 -52.49 -0.42 2.07 16 21 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 22 N -0.89 -25.75 13.96 55.43 0.77 -24.98 16 23 Si 0.88 20.13 27.47 -169.99 -4.67 15.46 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.58 7.82 -51.93 -0.41 0.17 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.64 7.65 -51.93 -0.40 0.25 16 34 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.41 5.12 7.53 -40.82 -0.31 4.81 16 38 H 0.14 2.14 6.20 -52.49 -0.33 1.82 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.13 2.24 5.88 -52.49 -0.31 1.93 16 42 H 0.04 0.98 6.81 -51.92 -0.35 0.63 16 43 H 0.04 0.87 7.18 -51.92 -0.37 0.50 16 44 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -31.22 375.34 -9.48 -40.70 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.68 Total: 4.93 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.56 Total: -14.09 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.73 Total: -34.30 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.72 Total: -13.61 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.23 Total: -4.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.22 -9.48 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294577549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.009 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds