Wall clock time and date at job start Tue Mar 31 2020 14:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47474 * 2 1 4 4 C 1.52993 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47378 * 54.99908 * 4 3 2 6 6 O 1.42903 * 109.47372 * 294.99367 * 4 3 2 7 7 C 1.42901 * 114.00229 * 150.00032 * 6 4 3 8 8 C 1.50705 * 109.46961 * 174.99998 * 4 3 2 9 9 O 1.21295 * 120.00054 * 114.99606 * 8 4 3 10 10 N 1.34776 * 120.00105 * 294.99823 * 8 4 3 11 11 C 1.40135 * 120.00206 * 184.46950 * 10 8 4 12 12 C 1.38643 * 120.10164 * 325.32777 * 11 10 8 13 13 C 1.38249 * 120.01098 * 179.97438 * 12 11 10 14 14 C 1.38304 * 120.20988 * 359.97438 * 13 12 11 15 15 C 1.38190 * 120.19908 * 0.02562 * 14 13 12 16 16 C 1.38787 * 119.98794 * 359.97438 * 15 14 13 17 17 S 1.76206 * 120.10496 * 180.02562 * 16 15 14 18 18 C 1.81398 * 102.99676 * 0.02562 * 17 16 15 19 19 C 1.50706 * 109.47045 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99564 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00000 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99715 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00086 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46656 * 90.00257 * 23 21 19 25 25 H 1.48490 * 109.47155 * 210.00219 * 23 21 19 26 26 H 1.48501 * 109.47289 * 330.00565 * 23 21 19 27 27 H 1.09000 * 109.46682 * 59.99553 * 1 2 3 28 28 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46809 * 300.00619 * 1 2 3 30 30 H 1.08997 * 109.47211 * 239.99943 * 2 1 3 31 31 H 1.09003 * 109.47404 * 119.99896 * 2 1 3 32 32 H 1.08997 * 109.46948 * 59.99782 * 3 2 1 33 33 H 1.08997 * 109.46801 * 299.99886 * 3 2 1 34 34 H 1.09003 * 109.47064 * 300.01108 * 7 6 4 35 35 H 1.09005 * 109.46724 * 60.00321 * 7 6 4 36 36 H 1.08990 * 109.47269 * 180.02562 * 7 6 4 37 37 H 0.97005 * 119.99288 * 4.46754 * 10 8 4 38 38 H 1.08000 * 119.99553 * 359.97438 * 12 11 10 39 39 H 1.08004 * 119.89365 * 180.02562 * 13 12 11 40 40 H 1.07995 * 119.89578 * 180.27529 * 14 13 12 41 41 H 1.07997 * 120.00926 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47522 * 300.00069 * 18 17 16 43 43 H 1.09001 * 109.47215 * 60.00366 * 18 17 16 44 44 H 0.97003 * 119.99248 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 8 4.0469 0.8729 1.2202 7 6 5.3064 0.2089 1.0989 8 6 4.0724 2.8578 -0.1245 9 8 4.6935 3.3629 0.7868 10 7 3.8316 3.5625 -1.2478 11 6 4.3777 4.8439 -1.4018 12 6 4.5190 5.6763 -0.3021 13 6 5.0585 6.9398 -0.4560 14 6 5.4593 7.3779 -1.7051 15 6 5.3224 6.5554 -2.8071 16 6 4.7819 5.2854 -2.6620 17 16 4.6066 4.2339 -4.0650 18 6 5.2605 5.2482 -5.4193 19 6 5.1789 4.4752 -6.7104 20 1 4.7737 3.4741 -6.7157 21 6 5.6215 5.0461 -7.8849 22 7 5.5497 4.3717 -9.0117 23 14 6.3216 6.7779 -7.8757 24 1 7.7870 6.7181 -7.6432 25 1 6.0542 7.4268 -9.1843 26 1 5.6803 7.5655 -6.7924 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 5.2210 -0.6032 0.3768 35 1 6.0603 0.9192 0.7593 36 1 5.5985 -0.1959 2.0677 37 1 3.2802 3.1827 -1.9497 38 1 4.2076 5.3376 0.6750 39 1 5.1681 7.5865 0.4020 40 1 5.8842 8.3642 -1.8188 41 1 5.6368 6.9005 -3.7810 42 1 4.6732 6.1624 -5.5050 43 1 6.3003 5.5023 -5.2136 44 1 5.8608 4.7736 -9.8379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294577549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:24 Heat of formation + Delta-G solvation = -86.920342 kcal Electronic energy + Delta-G solvation = -24668.282720 eV Core-core repulsion = 21096.746097 eV Total energy + Delta-G solvation = -3571.536623 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80206 -39.89680 -38.44747 -36.15727 -35.51026 -35.23635 -32.33642 -31.69676 -31.28168 -29.96919 -27.34004 -25.90072 -24.94644 -24.07023 -23.21148 -22.17082 -21.37036 -19.58002 -18.94714 -18.48853 -18.11657 -17.57936 -16.70269 -16.66064 -16.17254 -16.12629 -15.87378 -15.65294 -15.17097 -15.10819 -14.93292 -14.78017 -14.45109 -14.34616 -14.23519 -13.89569 -13.36904 -13.13939 -13.03157 -12.76172 -12.71864 -12.39642 -12.21929 -12.12976 -12.05800 -12.01232 -11.77605 -11.59818 -11.50777 -11.39701 -11.01874 -10.92952 -10.65030 -10.36617 -9.41610 -8.41247 -8.26356 -6.51898 0.14976 0.29881 0.66634 1.33174 1.33838 1.39302 1.43794 1.70867 1.85378 2.26114 2.69581 2.73560 2.92165 3.40251 3.78176 3.84585 3.85214 4.12012 4.19254 4.25493 4.34651 4.42713 4.44545 4.47067 4.48687 4.52609 4.64145 4.65994 4.72307 4.80307 4.83804 4.90154 5.00188 5.13239 5.22704 5.26015 5.27309 5.33844 5.40925 5.48598 5.51847 5.88822 5.98121 6.00826 6.28443 6.51861 6.94097 7.11470 8.73899 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.003402 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.705220 B = 8228.255923 C = 9537.523945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.110 4.110 4 C 0.080 3.920 5 H 0.110 0.890 6 O -0.370 6.370 7 C 0.023 3.977 8 C 0.490 3.510 9 O -0.544 6.544 10 N -0.658 5.658 11 C 0.142 3.858 12 C -0.115 4.115 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.135 4.135 16 C -0.119 4.119 17 S -0.134 6.134 18 C 0.034 3.966 19 C -0.532 4.532 20 H 0.044 0.956 21 C 0.027 3.973 22 N -0.934 5.934 23 Si 0.944 3.056 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.243 1.243 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.105 0.895 37 H 0.419 0.581 38 H 0.136 0.864 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.123 0.877 42 H 0.049 0.951 43 H 0.044 0.956 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 -2.548 19.998 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.148 4.148 4 C 0.018 3.982 5 H 0.128 0.872 6 O -0.287 6.287 7 C -0.073 4.073 8 C 0.279 3.721 9 O -0.421 6.421 10 N -0.305 5.305 11 C 0.042 3.958 12 C -0.137 4.137 13 C -0.131 4.131 14 C -0.129 4.129 15 C -0.159 4.159 16 C -0.235 4.235 17 S 0.111 5.889 18 C -0.114 4.114 19 C -0.571 4.571 20 H 0.063 0.937 21 C -0.175 4.175 22 N -0.572 5.572 23 Si 0.766 3.234 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.166 1.166 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.123 0.877 37 H 0.257 0.743 38 H 0.154 0.846 39 H 0.174 0.826 40 H 0.172 0.828 41 H 0.141 0.859 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.617 -3.456 20.464 21.500 hybrid contribution 0.932 1.533 -1.169 2.141 sum -4.685 -1.923 19.294 19.948 Atomic orbital electron populations 1.21768 0.94878 1.02313 1.02048 1.21453 0.96537 0.94573 1.02913 1.21748 0.89061 1.00066 1.03934 1.22233 0.97419 0.88392 0.90144 0.87239 1.87963 1.37610 1.72226 1.30898 1.23037 0.84165 0.95814 1.04299 1.22214 0.78958 0.89861 0.81108 1.90663 1.40691 1.71460 1.39241 1.43605 1.50957 1.14879 1.21089 1.17345 1.00140 0.86022 0.92306 1.21281 1.00925 0.93612 0.97854 1.21381 0.98213 0.95254 0.98233 1.21361 0.99533 1.00431 0.91619 1.21281 1.01082 0.92990 1.00547 1.21944 1.05452 0.99611 0.96449 1.84996 1.79471 1.25542 0.98845 1.21488 0.98770 0.97314 0.93787 1.20565 1.43803 1.01912 0.90792 0.93736 1.25787 0.94905 1.02482 0.94278 1.69994 1.47423 1.39970 0.99846 0.85753 0.79669 0.79043 0.78932 1.18771 1.20174 1.16641 0.92369 0.91870 0.92745 0.91018 0.91439 0.90957 0.88924 0.91671 0.95347 0.87691 0.74263 0.84587 0.82600 0.82824 0.85890 0.93270 0.93811 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.19 16 2 C -0.12 -1.62 5.83 30.59 0.18 -1.45 16 3 C -0.11 -1.82 4.89 30.59 0.15 -1.67 16 4 C 0.08 1.65 2.52 29.85 0.08 1.72 16 5 H 0.11 1.88 7.79 -2.39 -0.02 1.86 16 6 O -0.37 -8.42 9.42 -129.99 -1.22 -9.64 16 7 C 0.02 0.42 10.81 113.37 1.23 1.64 16 8 C 0.49 13.43 6.98 87.66 0.61 14.04 16 9 O -0.54 -18.41 13.93 15.91 0.22 -18.19 16 10 N -0.66 -18.13 4.95 -303.01 -1.50 -19.63 16 11 C 0.14 4.51 6.32 38.22 0.24 4.76 16 12 C -0.12 -3.37 8.70 22.37 0.19 -3.18 16 13 C -0.11 -2.70 10.04 22.29 0.22 -2.48 16 14 C -0.11 -2.79 10.04 22.27 0.22 -2.57 16 15 C -0.13 -4.32 9.36 22.39 0.21 -4.11 16 16 C -0.12 -4.15 6.12 22.71 0.14 -4.01 16 17 S -0.13 -5.28 20.72 -56.49 -1.17 -6.45 16 18 C 0.03 1.57 3.16 71.24 0.23 1.79 16 19 C -0.53 -29.48 9.68 25.60 0.25 -29.24 16 20 H 0.04 2.75 7.96 -2.91 -0.02 2.73 16 21 C 0.03 1.47 5.47 84.66 0.46 1.94 16 22 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 23 Si 0.94 41.06 27.47 68.60 1.88 42.94 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.00 7.82 -2.39 -0.02 0.98 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.33 7.65 -2.39 -0.02 1.31 16 34 H 0.06 0.91 8.09 -2.39 -0.02 0.89 16 35 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.42 10.24 7.53 -92.70 -0.70 9.54 16 38 H 0.14 4.07 6.20 -2.91 -0.02 4.05 16 39 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.12 4.05 5.88 -2.91 -0.02 4.03 16 42 H 0.05 2.17 6.81 -2.39 -0.02 2.15 16 43 H 0.04 1.94 7.18 -2.39 -0.02 1.92 16 44 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -68.86 375.34 3.88 -64.98 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.25 Total: 25.37 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 5.12 Total: -23.99 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -1.20 Total: -75.02 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.00 Total: -27.83 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.88 Total: 42.94 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -1.17 Total: -6.45 kcal Total: -68.86 3.88 -64.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294577549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.942 kcal (2) G-P(sol) polarization free energy of solvation -68.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds