Wall clock time and date at job start Tue Mar 31 2020 14:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47051 * 2 1 4 4 C 1.53002 * 109.47116 * 321.31815 * 3 2 1 5 5 C 1.52999 * 109.47435 * 201.31644 * 3 2 1 6 6 N 1.46500 * 109.47373 * 81.31796 * 3 2 1 7 7 C 1.46502 * 120.00076 * 247.92214 * 6 3 2 8 8 C 1.50699 * 109.46953 * 269.99645 * 7 6 3 9 9 H 1.07998 * 120.00141 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99525 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00405 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99634 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47432 * 89.99530 * 12 10 8 14 14 H 1.48508 * 109.46950 * 209.99786 * 12 10 8 15 15 H 1.48502 * 109.47295 * 329.99532 * 12 10 8 16 16 C 1.34778 * 119.99973 * 67.91524 * 6 3 2 17 17 O 1.21616 * 120.00167 * 202.75817 * 16 6 3 18 18 C 1.47378 * 119.99575 * 22.76031 * 16 6 3 19 19 C 1.36759 * 122.89643 * 321.20314 * 18 16 6 20 20 S 1.70553 * 110.75898 * 179.76542 * 19 18 16 21 21 C 1.75690 * 91.91685 * 0.35340 * 20 19 18 22 22 C 1.41439 * 125.13386 * 179.91013 * 21 20 19 23 23 C 1.50700 * 120.00351 * 359.70106 * 22 21 20 24 24 O 1.21424 * 120.00023 * 179.69245 * 22 21 20 25 25 C 1.36401 * 109.73043 * 359.64748 * 21 20 19 26 26 H 1.08995 * 109.47221 * 59.99972 * 1 2 3 27 27 H 1.09002 * 109.46720 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47120 * 299.99569 * 1 2 3 29 29 H 1.09004 * 109.46653 * 239.99860 * 2 1 3 30 30 H 1.08996 * 109.47284 * 120.00581 * 2 1 3 31 31 H 1.09000 * 109.46932 * 179.97438 * 4 3 2 32 32 H 1.08992 * 109.47306 * 299.99617 * 4 3 2 33 33 H 1.08996 * 109.47306 * 60.00028 * 4 3 2 34 34 H 1.08994 * 109.47243 * 254.04864 * 5 3 2 35 35 H 1.09004 * 109.46783 * 14.05038 * 5 3 2 36 36 H 1.09004 * 109.46966 * 134.04180 * 5 3 2 37 37 H 1.09001 * 109.47120 * 29.99525 * 7 6 3 38 38 H 1.09005 * 109.47084 * 149.99539 * 7 6 3 39 39 H 0.97005 * 119.99962 * 180.02562 * 11 10 8 40 40 H 1.08009 * 124.62334 * 0.05936 * 19 18 16 41 41 H 1.08996 * 109.47582 * 89.99889 * 23 22 21 42 42 H 1.09006 * 109.46661 * 329.99678 * 23 22 21 43 43 H 1.09001 * 109.47055 * 210.00259 * 23 22 21 44 44 H 1.07996 * 123.31028 * 180.29986 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.1483 2.2986 -0.9016 5 6 3.4770 1.4754 -0.5244 6 7 2.0062 1.9724 1.3654 7 6 1.0661 3.0407 1.7134 8 6 1.7177 4.3792 1.4796 9 1 2.7309 4.4292 1.1092 10 6 1.0206 5.5400 1.7395 11 7 -0.2130 5.4791 2.1911 12 14 1.8281 7.1992 1.4490 13 1 1.5598 7.6435 0.0577 14 1 1.2728 8.1936 2.4020 15 1 3.2937 7.0797 1.6564 16 6 2.8400 1.4771 2.3013 17 8 2.5641 1.5866 3.4807 18 6 4.0861 0.8028 1.8954 19 6 4.1635 -0.0229 0.8080 20 16 5.7467 -0.6290 0.6208 21 6 6.3102 0.2389 2.0406 22 6 7.6327 0.2092 2.5411 23 6 8.6827 -0.6195 1.8470 24 8 7.9222 0.8516 3.5300 25 6 5.2810 0.9503 2.5840 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.5114 3.3264 -0.9012 32 1 1.1735 1.9044 -1.9174 33 1 0.1247 2.2752 -0.5280 34 1 4.1629 1.6438 0.3058 35 1 3.7113 0.5241 -1.0021 36 1 3.5803 2.2818 -1.2505 37 1 0.1746 2.9570 1.0918 38 1 0.7867 2.9510 2.7633 39 1 -0.7035 6.2959 2.3736 40 1 3.3361 -0.2555 0.1539 41 1 9.1783 -0.0158 1.0868 42 1 8.2117 -1.4822 1.3758 43 1 9.4175 -0.9601 2.5765 44 1 5.3864 1.5682 3.4635 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298065504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:10 Heat of formation + Delta-G solvation = 16.225766 kcal Electronic energy + Delta-G solvation = -26518.321829 eV Core-core repulsion = 22951.257957 eV Total energy + Delta-G solvation = -3567.063872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.48472 -40.53159 -38.70315 -38.13130 -35.38113 -33.71759 -33.05439 -31.38956 -30.56550 -29.28346 -27.98438 -26.29513 -24.96376 -24.68459 -23.23319 -21.79604 -20.64353 -18.86285 -18.68305 -18.58141 -17.78740 -17.05591 -16.70877 -16.39644 -16.26385 -16.06617 -15.92844 -15.71322 -15.36513 -14.89326 -14.55016 -14.41211 -14.18042 -13.83166 -13.48821 -13.32388 -13.24097 -13.07836 -13.06262 -12.77856 -12.72722 -12.54573 -12.45603 -12.35474 -12.25253 -12.17315 -11.97871 -11.80186 -11.61888 -11.25860 -11.02746 -10.78210 -10.63060 -9.62138 -9.45661 -9.25294 -8.23022 -6.37123 -0.83350 0.39698 0.54700 0.63813 1.32322 1.35808 1.45135 1.64349 2.00118 2.32100 2.40410 3.05850 3.22723 3.60249 3.67622 3.74214 3.98501 4.03526 4.12617 4.15997 4.32962 4.43116 4.49457 4.58284 4.63910 4.69879 4.74280 4.77585 4.87515 4.88303 4.95606 5.00636 5.04759 5.11518 5.16521 5.21866 5.29350 5.38562 5.47066 5.54444 5.62111 5.88778 6.07143 6.51340 6.68823 6.76630 7.21792 7.37952 8.83320 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.004809 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.724706 B = 5820.548313 C = 7068.133305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.153 3.847 4 C -0.144 4.144 5 C -0.210 4.210 6 N -0.590 5.590 7 C 0.263 3.737 8 C -0.534 4.534 9 H 0.050 0.950 10 C 0.012 3.988 11 N -0.926 5.926 12 Si 0.960 3.040 13 H -0.260 1.260 14 H -0.283 1.283 15 H -0.277 1.277 16 C 0.567 3.433 17 O -0.600 6.600 18 C -0.223 4.223 19 C -0.172 4.172 20 S 0.381 5.619 21 C -0.358 4.358 22 C 0.417 3.583 23 C -0.191 4.191 24 O -0.516 6.516 25 C -0.018 4.018 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.018 0.982 29 H 0.129 0.871 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.039 0.961 38 H -0.014 1.014 39 H 0.266 0.734 40 H 0.236 0.764 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.403 -18.588 -15.275 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.069 3.931 4 C -0.201 4.201 5 C -0.266 4.266 6 N -0.320 5.320 7 C 0.142 3.858 8 C -0.572 4.572 9 H 0.069 0.931 10 C -0.187 4.187 11 N -0.565 5.565 12 Si 0.785 3.215 13 H -0.184 1.184 14 H -0.209 1.209 15 H -0.202 1.202 16 C 0.356 3.644 17 O -0.482 6.482 18 C -0.237 4.237 19 C -0.310 4.310 20 S 0.647 5.353 21 C -0.475 4.475 22 C 0.300 3.700 23 C -0.248 4.248 24 O -0.398 6.398 25 C -0.050 4.050 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.038 0.962 29 H 0.147 0.853 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.004 0.996 39 H 0.075 0.925 40 H 0.251 0.749 41 H 0.140 0.860 42 H 0.127 0.873 43 H 0.116 0.884 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.919 -19.055 -15.181 27.577 hybrid contribution -1.191 2.853 2.127 3.753 sum 11.728 -16.202 -13.055 23.885 Atomic orbital electron populations 1.21828 0.95128 1.02262 1.01502 1.22460 0.97825 0.94424 1.03871 1.20884 0.96995 0.94390 0.80813 1.22171 0.98999 0.99625 0.99344 1.23966 0.95748 1.04232 1.02663 1.48094 1.37092 1.36665 1.10165 1.18806 0.88724 0.83963 0.94294 1.21626 0.99769 0.91699 1.44144 0.93144 1.25755 0.95391 1.02877 0.94657 1.70051 1.11383 1.29519 1.45581 0.85529 0.78250 0.78995 0.78740 1.18445 1.20860 1.20244 1.18204 0.83589 0.77766 0.84852 1.90690 1.76338 1.60679 1.20503 1.18779 0.94829 1.08183 1.01883 1.28320 1.08440 0.96227 0.98016 1.82083 0.94653 1.39495 1.19054 1.24086 1.00561 1.14109 1.08707 1.20966 0.87658 0.78752 0.82588 1.22295 0.98271 1.01097 1.03148 1.90608 1.83080 1.40159 1.25964 1.20573 0.90998 0.95756 0.97660 0.90704 0.90726 0.96235 0.85302 0.91867 0.93317 0.88142 0.92986 0.90112 0.86459 0.91182 0.94351 0.99554 0.92472 0.74862 0.85986 0.87289 0.88395 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.82 71.98 0.63 -2.96 16 2 C -0.15 -3.20 3.91 30.59 0.12 -3.08 16 3 C 0.15 4.54 0.80 3.60 0.00 4.54 16 4 C -0.14 -4.38 6.01 71.98 0.43 -3.95 16 5 C -0.21 -4.84 7.34 71.98 0.53 -4.31 16 6 N -0.59 -25.61 2.40 -782.95 -1.88 -27.49 16 7 C 0.26 14.35 4.70 85.63 0.40 14.75 16 8 C -0.53 -30.72 8.33 25.60 0.21 -30.51 16 9 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 10 C 0.01 0.72 5.46 84.65 0.46 1.18 16 11 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 12 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 13 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 15 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 16 C 0.57 26.20 6.48 86.65 0.56 26.76 16 17 O -0.60 -34.39 16.65 -4.08 -0.07 -34.46 16 18 C -0.22 -7.64 3.88 -21.11 -0.08 -7.72 16 19 C -0.17 -3.65 5.11 67.47 0.34 -3.31 16 20 S 0.38 5.07 21.79 -56.49 -1.23 3.84 16 21 C -0.36 -9.02 6.19 22.63 0.14 -8.88 16 22 C 0.42 10.33 7.05 26.47 0.19 10.52 16 23 C -0.19 -2.28 9.94 71.24 0.71 -1.57 16 24 O -0.52 -18.18 17.44 -3.48 -0.06 -18.24 16 25 C -0.02 -0.62 9.65 21.95 0.21 -0.41 16 26 H 0.07 1.61 6.40 -2.39 -0.02 1.59 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.13 1.39 7.28 -2.38 -0.02 1.37 16 30 H 0.06 1.51 5.94 -2.39 -0.01 1.50 16 31 H 0.05 1.81 7.05 -2.39 -0.02 1.79 16 32 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.05 1.78 4.85 -2.39 -0.01 1.76 16 34 H 0.08 2.31 3.73 -12.46 -0.05 2.26 16 35 H 0.12 1.44 5.41 -2.38 -0.01 1.42 16 36 H 0.07 1.61 7.65 -2.39 -0.02 1.60 16 37 H 0.04 2.08 5.88 -2.39 -0.01 2.07 16 38 H -0.01 -0.89 7.29 -2.38 -0.02 -0.91 16 39 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 40 H 0.24 3.85 1.81 -2.91 -0.01 3.84 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.95 16 42 H 0.11 0.66 7.25 -2.38 -0.02 0.64 16 43 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.11 4.83 8.00 -2.91 -0.02 4.81 16 Total: -1.00 -87.29 351.47 4.94 -82.35 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.00 Total: 11.47 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 4.87 Total: -8.96 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -1.60 Total: -83.49 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.13 Total: -52.69 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.23 Total: 3.84 kcal Total: -87.29 4.94 -82.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298065504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.579 kcal (2) G-P(sol) polarization free energy of solvation -87.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds