Wall clock time and date at job start Tue Mar 31 2020 14:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46483 * 2 1 4 4 C 1.52995 * 109.47090 * 119.99824 * 2 1 3 5 5 C 1.52994 * 109.47167 * 65.88959 * 4 2 1 6 6 H 1.09004 * 109.47284 * 304.73045 * 5 4 2 7 7 O 1.42906 * 109.47255 * 64.73041 * 5 4 2 8 8 C 1.53002 * 109.47398 * 184.73018 * 5 4 2 9 9 N 1.46499 * 109.47402 * 180.02562 * 8 5 4 10 10 C 1.34775 * 119.99876 * 180.02562 * 9 8 5 11 11 O 1.21546 * 120.00178 * 359.97438 * 10 9 8 12 12 C 1.47869 * 119.99859 * 179.97438 * 10 9 8 13 13 C 1.39676 * 120.09918 * 359.71362 * 12 10 9 14 14 C 1.38040 * 120.03690 * 179.79072 * 13 12 10 15 15 C 1.38178 * 120.24182 * 0.46744 * 14 13 12 16 16 C 1.39181 * 120.20258 * 359.79286 * 15 14 13 17 17 S 1.76207 * 120.01980 * 179.97438 * 16 15 14 18 18 C 1.76197 * 99.99966 * 266.04386 * 17 16 15 19 19 H 1.08000 * 120.00018 * 5.18677 * 18 17 16 20 20 C 1.38723 * 120.00027 * 185.18448 * 18 17 16 21 21 N 1.31626 * 120.00156 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00101 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46790 * 89.99947 * 22 20 18 24 24 H 1.48498 * 109.47172 * 209.99686 * 22 20 18 25 25 H 1.48501 * 109.46730 * 329.99787 * 22 20 18 26 26 C 1.38874 * 119.96076 * 359.97058 * 16 15 14 27 27 H 1.09007 * 109.47247 * 299.99793 * 1 2 3 28 28 H 1.09002 * 109.47299 * 60.00238 * 1 2 3 29 29 H 1.09002 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46849 * 240.00251 * 2 1 3 31 31 H 1.09008 * 109.46828 * 183.90956 * 3 2 1 32 32 H 1.08997 * 109.47463 * 303.90245 * 3 2 1 33 33 H 1.08994 * 109.47474 * 63.91226 * 3 2 1 34 34 H 1.09001 * 109.47644 * 305.88748 * 4 2 1 35 35 H 1.09005 * 109.47125 * 185.88691 * 4 2 1 36 36 H 0.96699 * 113.99820 * 59.99859 * 7 5 4 37 37 H 1.09004 * 109.46926 * 300.00247 * 8 5 4 38 38 H 1.08999 * 109.47023 * 59.99979 * 8 5 4 39 39 H 0.96999 * 119.99989 * 359.97438 * 9 8 5 40 40 H 1.07999 * 119.98337 * 0.02562 * 13 12 10 41 41 H 1.07998 * 119.87529 * 180.21563 * 14 13 12 42 42 H 1.08004 * 119.89853 * 179.76050 * 15 14 13 43 43 H 0.97000 * 120.00010 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.12234 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6545 -2.2000 1.1775 6 1 0.5769 -2.2883 1.0387 7 8 2.3283 -2.8152 0.0776 8 6 2.0599 -2.8965 2.4780 9 7 1.6913 -4.3127 2.4091 10 6 1.9532 -5.1286 3.4494 11 8 2.4956 -4.6896 4.4445 12 6 1.5806 -6.5579 3.3800 13 6 0.9518 -7.0633 2.2398 14 6 0.6084 -8.3988 2.1746 15 6 0.8757 -9.2387 3.2387 16 6 1.4970 -8.7446 4.3820 17 16 1.8350 -9.8199 5.7363 18 6 0.3944 -9.5443 6.7127 19 1 -0.4022 -8.9200 6.3356 20 6 0.2833 -10.1292 7.9657 21 7 -0.7931 -9.9237 8.6948 22 14 1.6613 -11.2085 8.6181 23 1 2.6320 -10.3720 9.3686 24 1 1.0952 -12.2415 9.5223 25 1 2.3521 -11.8698 7.4821 26 6 1.8505 -7.4036 4.4545 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1277 1.4434 -0.0701 32 1 1.6205 1.9762 -0.8529 33 1 1.7349 1.9358 0.9229 34 1 1.5932 -0.2719 2.1361 35 1 3.1249 -0.6308 1.3035 36 1 3.2928 -2.7742 0.1346 37 1 3.1374 -2.8083 2.6168 38 1 1.5459 -2.4274 3.3169 39 1 1.2581 -4.6630 1.6150 40 1 0.7375 -6.4098 1.4071 41 1 0.1254 -8.7875 1.2904 42 1 0.6012 -10.2818 3.1834 43 1 -0.8706 -10.3324 9.5711 44 1 2.3331 -7.0174 5.3402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305085215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:56 Heat of formation + Delta-G solvation = -88.396458 kcal Electronic energy + Delta-G solvation = -23858.844546 eV Core-core repulsion = 20287.243915 eV Total energy + Delta-G solvation = -3571.600632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12160 -38.85826 -37.76500 -35.75873 -34.44190 -32.49585 -31.42238 -30.64720 -30.05232 -27.59981 -26.50323 -25.67669 -23.52408 -22.52971 -22.01230 -20.68677 -20.18575 -18.48334 -17.45587 -16.86066 -16.62387 -16.06378 -15.64373 -15.31245 -15.13606 -14.93636 -14.69612 -14.44576 -14.31078 -14.05021 -13.52918 -13.40877 -13.25752 -12.92058 -12.74931 -12.57844 -12.25221 -12.18378 -11.95599 -11.75488 -11.49693 -11.35257 -11.19303 -11.09735 -11.07885 -10.90405 -10.62916 -10.43679 -9.94081 -9.80063 -9.24875 -9.16866 -9.07969 -8.63953 -8.15291 -7.13152 -6.32570 -4.08065 1.10929 1.59843 2.84953 3.02718 3.06181 3.27568 3.38909 3.50512 3.96141 4.07642 4.17322 4.26590 4.37017 4.47551 4.66555 4.73815 4.85232 4.90208 4.93014 5.05255 5.07222 5.15867 5.19863 5.25101 5.29152 5.40591 5.43352 5.46274 5.52915 5.64313 5.67529 5.75643 5.79445 5.91319 5.92840 5.98898 6.18961 6.29590 6.52158 6.58147 6.83343 7.11402 7.18562 7.47040 7.91582 8.25693 8.44998 9.11266 10.76818 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.002217 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.942290 B =12628.920719 C =13029.560577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.145 4.145 5 C 0.093 3.907 6 H 0.108 0.892 7 O -0.557 6.557 8 C 0.087 3.913 9 N -0.726 5.726 10 C 0.563 3.437 11 O -0.536 6.536 12 C -0.153 4.153 13 C -0.084 4.084 14 C -0.140 4.140 15 C -0.051 4.051 16 C -0.086 4.086 17 S -0.112 6.112 18 C -0.509 4.509 19 H 0.091 0.909 20 C 0.094 3.906 21 N -0.876 5.876 22 Si 0.858 3.142 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.239 1.239 26 C -0.017 4.017 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.376 0.624 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.403 0.597 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.272 0.728 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 17.212 -20.098 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.183 4.183 5 C 0.034 3.966 6 H 0.126 0.874 7 O -0.363 6.363 8 C -0.037 4.037 9 N -0.380 5.380 10 C 0.352 3.648 11 O -0.413 6.413 12 C -0.158 4.158 13 C -0.103 4.103 14 C -0.159 4.159 15 C -0.072 4.072 16 C -0.197 4.197 17 S 0.121 5.879 18 C -0.656 4.656 19 H 0.109 0.891 20 C -0.115 4.115 21 N -0.512 5.512 22 Si 0.683 3.317 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.163 1.163 26 C -0.038 4.038 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.224 0.776 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.240 0.760 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.082 0.918 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.256 16.674 -19.134 25.918 hybrid contribution -0.368 0.427 0.161 0.587 sum 4.888 17.101 -18.973 26.006 Atomic orbital electron populations 1.21917 0.95222 1.01936 1.01783 1.21038 0.95959 0.95881 0.98312 1.21854 1.00889 0.96014 1.01821 1.22286 1.01857 0.94913 0.99263 1.22280 0.98270 0.91094 0.84968 0.87410 1.86583 1.23702 1.80644 1.45339 1.22060 1.01269 0.81736 0.98620 1.45754 1.63517 1.09190 1.19559 1.18395 0.78043 0.85984 0.82423 1.90774 1.42411 1.76837 1.31302 1.19822 1.06127 0.92906 0.96947 1.21198 0.97027 0.95828 0.96284 1.21055 1.02214 0.93478 0.99197 1.21905 0.93217 1.00216 0.91850 1.22195 1.01337 0.96788 0.99360 1.83065 1.33410 1.52816 1.18564 1.22245 1.02093 1.37371 1.03871 0.89083 1.24750 0.95947 0.95509 0.95246 1.69928 1.27117 1.42745 1.11400 0.86726 0.82572 0.81259 0.81155 1.19031 1.19801 1.16341 1.21890 0.93409 0.91801 0.96722 0.92697 0.92694 0.92389 0.90386 0.92772 0.92657 0.92710 0.90519 0.91152 0.77590 0.91188 0.90530 0.76045 0.86233 0.85589 0.84894 0.91817 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.97 37.16 0.33 -0.54 16 2 C -0.09 -0.52 2.87 -90.62 -0.26 -0.78 16 3 C -0.15 -0.76 9.19 37.16 0.34 -0.42 16 4 C -0.14 -0.80 4.35 -26.74 -0.12 -0.92 16 5 C 0.09 0.62 2.93 -26.73 -0.08 0.54 16 6 H 0.11 0.73 6.39 -51.93 -0.33 0.40 16 7 O -0.56 -3.86 12.51 -35.23 -0.44 -4.30 16 8 C 0.09 0.81 5.34 -4.04 -0.02 0.79 16 9 N -0.73 -8.27 5.40 -61.24 -0.33 -8.60 16 10 C 0.56 9.05 7.77 -12.32 -0.10 8.95 16 11 O -0.54 -10.58 16.34 5.33 0.09 -10.49 16 12 C -0.15 -2.57 5.87 -104.99 -0.62 -3.18 16 13 C -0.08 -1.15 9.54 -39.12 -0.37 -1.53 16 14 C -0.14 -1.98 10.02 -39.68 -0.40 -2.37 16 15 C -0.05 -0.89 9.79 -39.25 -0.38 -1.28 16 16 C -0.09 -1.81 5.45 -39.00 -0.21 -2.02 16 17 S -0.11 -2.74 19.38 -107.50 -2.08 -4.83 16 18 C -0.51 -14.69 10.00 30.91 0.31 -14.38 16 19 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 20 C 0.09 2.73 5.50 -17.46 -0.10 2.64 16 21 N -0.88 -26.40 13.97 55.49 0.78 -25.62 16 22 Si 0.86 21.13 27.74 -169.99 -4.71 16.41 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 26 C -0.02 -0.33 9.34 -38.92 -0.36 -0.70 16 27 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.35 6.50 -51.93 -0.34 0.01 16 30 H 0.08 0.49 7.66 -51.93 -0.40 0.10 16 31 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.38 1.66 9.05 45.56 0.41 2.07 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 3.79 6.38 -40.82 -0.26 3.53 16 40 H 0.12 1.18 6.40 -52.49 -0.34 0.84 16 41 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.14 3.03 7.65 -52.49 -0.40 2.63 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -33.71 378.97 -8.91 -42.62 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.88 Total: 4.30 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -2.03 Total: -15.21 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.44 Total: -34.22 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.35 Total: -14.79 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.41 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.08 Total: -4.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.71 -8.91 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305085215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.780 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds