Wall clock time and date at job start Tue Mar 31 2020 14:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46483 * 2 1 4 4 C 1.52995 * 109.47090 * 119.99824 * 2 1 3 5 5 C 1.52994 * 109.47167 * 65.88959 * 4 2 1 6 6 H 1.09004 * 109.47284 * 304.73045 * 5 4 2 7 7 O 1.42906 * 109.47255 * 64.73041 * 5 4 2 8 8 C 1.53002 * 109.47398 * 184.73018 * 5 4 2 9 9 N 1.46499 * 109.47402 * 180.02562 * 8 5 4 10 10 C 1.34775 * 119.99876 * 180.02562 * 9 8 5 11 11 O 1.21546 * 120.00178 * 359.97438 * 10 9 8 12 12 C 1.47869 * 119.99859 * 179.97438 * 10 9 8 13 13 C 1.39676 * 120.09918 * 359.71362 * 12 10 9 14 14 C 1.38040 * 120.03690 * 179.79072 * 13 12 10 15 15 C 1.38178 * 120.24182 * 0.46744 * 14 13 12 16 16 C 1.39181 * 120.20258 * 359.79286 * 15 14 13 17 17 S 1.76207 * 120.01980 * 179.97438 * 16 15 14 18 18 C 1.76197 * 99.99966 * 266.04386 * 17 16 15 19 19 H 1.08000 * 120.00018 * 5.18677 * 18 17 16 20 20 C 1.38723 * 120.00027 * 185.18448 * 18 17 16 21 21 N 1.31626 * 120.00156 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00101 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46790 * 89.99947 * 22 20 18 24 24 H 1.48498 * 109.47172 * 209.99686 * 22 20 18 25 25 H 1.48501 * 109.46730 * 329.99787 * 22 20 18 26 26 C 1.38874 * 119.96076 * 359.97058 * 16 15 14 27 27 H 1.09007 * 109.47247 * 299.99793 * 1 2 3 28 28 H 1.09002 * 109.47299 * 60.00238 * 1 2 3 29 29 H 1.09002 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46849 * 240.00251 * 2 1 3 31 31 H 1.09008 * 109.46828 * 183.90956 * 3 2 1 32 32 H 1.08997 * 109.47463 * 303.90245 * 3 2 1 33 33 H 1.08994 * 109.47474 * 63.91226 * 3 2 1 34 34 H 1.09001 * 109.47644 * 305.88748 * 4 2 1 35 35 H 1.09005 * 109.47125 * 185.88691 * 4 2 1 36 36 H 0.96699 * 113.99820 * 59.99859 * 7 5 4 37 37 H 1.09004 * 109.46926 * 300.00247 * 8 5 4 38 38 H 1.08999 * 109.47023 * 59.99979 * 8 5 4 39 39 H 0.96999 * 119.99989 * 359.97438 * 9 8 5 40 40 H 1.07999 * 119.98337 * 0.02562 * 13 12 10 41 41 H 1.07998 * 119.87529 * 180.21563 * 14 13 12 42 42 H 1.08004 * 119.89853 * 179.76050 * 15 14 13 43 43 H 0.97000 * 120.00010 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.12234 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6545 -2.2000 1.1775 6 1 0.5769 -2.2883 1.0387 7 8 2.3283 -2.8152 0.0776 8 6 2.0599 -2.8965 2.4780 9 7 1.6913 -4.3127 2.4091 10 6 1.9532 -5.1286 3.4494 11 8 2.4956 -4.6896 4.4445 12 6 1.5806 -6.5579 3.3800 13 6 0.9518 -7.0633 2.2398 14 6 0.6084 -8.3988 2.1746 15 6 0.8757 -9.2387 3.2387 16 6 1.4970 -8.7446 4.3820 17 16 1.8350 -9.8199 5.7363 18 6 0.3944 -9.5443 6.7127 19 1 -0.4022 -8.9200 6.3356 20 6 0.2833 -10.1292 7.9657 21 7 -0.7931 -9.9237 8.6948 22 14 1.6613 -11.2085 8.6181 23 1 2.6320 -10.3720 9.3686 24 1 1.0952 -12.2415 9.5223 25 1 2.3521 -11.8698 7.4821 26 6 1.8505 -7.4036 4.4545 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1277 1.4434 -0.0701 32 1 1.6205 1.9762 -0.8529 33 1 1.7349 1.9358 0.9229 34 1 1.5932 -0.2719 2.1361 35 1 3.1249 -0.6308 1.3035 36 1 3.2928 -2.7742 0.1346 37 1 3.1374 -2.8083 2.6168 38 1 1.5459 -2.4274 3.3169 39 1 1.2581 -4.6630 1.6150 40 1 0.7375 -6.4098 1.4071 41 1 0.1254 -8.7875 1.2904 42 1 0.6012 -10.2818 3.1834 43 1 -0.8706 -10.3324 9.5711 44 1 2.3331 -7.0174 5.3402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305085215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:55 Heat of formation + Delta-G solvation = -112.354741 kcal Electronic energy + Delta-G solvation = -23859.883456 eV Core-core repulsion = 20287.243915 eV Total energy + Delta-G solvation = -3572.639541 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.31119 -39.64258 -38.94310 -36.32375 -35.40838 -34.72633 -32.58709 -31.98732 -30.85821 -28.01863 -27.93095 -27.27115 -24.69915 -23.72685 -22.83665 -21.74539 -20.84428 -20.09036 -19.10315 -17.68001 -17.33181 -17.22589 -17.14843 -16.72934 -16.39868 -16.08580 -15.71537 -15.56146 -15.07246 -14.95211 -14.75291 -14.65187 -14.57549 -14.08735 -13.77291 -13.61119 -13.27779 -13.12603 -13.07797 -12.99546 -12.69898 -12.61634 -12.30984 -12.24731 -11.95740 -11.86158 -11.51461 -11.38840 -11.32185 -11.22711 -11.00948 -10.78875 -10.32558 -9.93767 -9.76028 -9.15509 -8.54630 -6.28949 -0.22876 0.19160 1.05549 1.30829 1.43376 1.63936 1.75263 2.02360 2.21013 2.58468 2.83324 2.95414 3.43147 3.57352 3.64846 3.88979 3.90575 3.99884 4.03368 4.16283 4.22213 4.30493 4.42372 4.44448 4.58040 4.62868 4.73244 4.82621 4.85918 4.88510 4.97501 5.01913 5.10485 5.15503 5.17785 5.26141 5.29934 5.36968 5.42227 5.48550 5.55902 5.67993 5.81149 6.09295 6.42048 6.78391 6.87626 7.09967 8.58907 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.002217 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.942290 B =12628.920719 C =13029.560577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.142 4.142 5 C 0.109 3.891 6 H 0.111 0.889 7 O -0.564 6.564 8 C 0.084 3.916 9 N -0.702 5.702 10 C 0.560 3.440 11 O -0.583 6.583 12 C -0.159 4.159 13 C -0.059 4.059 14 C -0.122 4.122 15 C -0.058 4.058 16 C -0.120 4.120 17 S -0.114 6.114 18 C -0.524 4.524 19 H 0.046 0.954 20 C 0.039 3.961 21 N -0.919 5.919 22 Si 0.923 3.077 23 H -0.262 1.262 24 H -0.257 1.257 25 H -0.226 1.226 26 C -0.043 4.043 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.388 0.612 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.417 0.583 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.141 0.859 43 H 0.278 0.722 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 17.586 -23.418 29.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.180 4.180 5 C 0.049 3.951 6 H 0.129 0.871 7 O -0.371 6.371 8 C -0.040 4.040 9 N -0.355 5.355 10 C 0.348 3.652 11 O -0.464 6.464 12 C -0.164 4.164 13 C -0.077 4.077 14 C -0.141 4.141 15 C -0.079 4.079 16 C -0.231 4.231 17 S 0.120 5.880 18 C -0.671 4.671 19 H 0.064 0.936 20 C -0.166 4.166 21 N -0.556 5.556 22 Si 0.744 3.256 23 H -0.187 1.187 24 H -0.181 1.181 25 H -0.150 1.150 26 C -0.065 4.065 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.238 0.762 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.256 0.744 40 H 0.189 0.811 41 H 0.195 0.805 42 H 0.159 0.841 43 H 0.087 0.913 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.621 17.065 -22.517 28.806 hybrid contribution -0.549 0.489 0.981 1.226 sum 5.071 17.554 -21.536 28.243 Atomic orbital electron populations 1.21932 0.95352 1.01834 1.01881 1.20997 0.95814 0.96049 0.97977 1.21848 1.01101 0.95727 1.01874 1.22256 1.02389 0.94035 0.99308 1.22128 0.98346 0.91241 0.83360 0.87133 1.86561 1.24886 1.80645 1.45053 1.22263 1.01245 0.80370 1.00089 1.45597 1.61816 1.09627 1.18465 1.18387 0.77850 0.86124 0.82801 1.90755 1.44810 1.77514 1.33358 1.19959 1.06310 0.93059 0.97053 1.21746 0.93656 0.96435 0.95902 1.21567 1.00309 0.92943 0.99275 1.22095 0.92699 1.01391 0.91677 1.22088 1.05064 0.96651 0.99331 1.82607 1.31135 1.54455 1.19848 1.22379 1.03214 1.36519 1.05024 0.93591 1.25750 0.98561 0.96884 0.95386 1.70033 1.29246 1.44222 1.12145 0.85756 0.79290 0.79639 0.80963 1.18717 1.18089 1.14982 1.21646 0.95131 0.92329 0.97346 0.92723 0.92546 0.92558 0.90784 0.92468 0.92489 0.92787 0.90531 0.90408 0.76236 0.91241 0.91366 0.74446 0.81096 0.80537 0.84139 0.91255 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.97 71.98 0.65 -0.83 16 2 C -0.09 -0.82 2.87 -10.79 -0.03 -0.85 16 3 C -0.15 -1.26 9.19 71.98 0.66 -0.60 16 4 C -0.14 -1.26 4.35 30.59 0.13 -1.13 16 5 C 0.11 1.16 2.93 30.59 0.09 1.25 16 6 H 0.11 1.17 6.39 -2.39 -0.02 1.16 16 7 O -0.56 -5.97 12.51 -148.98 -1.86 -7.83 16 8 C 0.08 1.41 5.34 86.38 0.46 1.87 16 9 N -0.70 -14.32 5.40 -465.95 -2.52 -16.83 16 10 C 0.56 17.65 7.77 86.79 0.67 18.32 16 11 O -0.58 -23.74 16.34 -3.86 -0.06 -23.81 16 12 C -0.16 -5.18 5.87 -20.11 -0.12 -5.30 16 13 C -0.06 -1.37 9.54 22.57 0.22 -1.15 16 14 C -0.12 -2.92 10.02 22.21 0.22 -2.69 16 15 C -0.06 -1.95 9.79 22.48 0.22 -1.73 16 16 C -0.12 -5.18 5.45 22.65 0.12 -5.05 16 17 S -0.11 -5.75 19.38 -56.49 -1.09 -6.85 16 18 C -0.52 -31.80 10.00 67.94 0.68 -31.12 16 19 H 0.05 3.09 8.02 -2.91 -0.02 3.06 16 20 C 0.04 2.35 5.50 84.84 0.47 2.81 16 21 N -0.92 -57.45 13.97 21.63 0.30 -57.15 16 22 Si 0.92 44.42 27.74 68.60 1.90 46.33 16 23 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.23 -10.34 6.74 99.48 0.67 -9.67 16 26 C -0.04 -1.79 9.34 22.70 0.21 -1.58 16 27 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.56 6.50 -2.39 -0.02 0.54 16 30 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 31 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.39 2.22 9.05 -74.06 -0.67 1.55 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.42 6.10 6.38 -92.71 -0.59 5.50 16 40 H 0.17 2.23 6.40 -2.91 -0.02 2.21 16 41 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 42 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.28 15.95 8.31 -92.71 -0.77 15.17 16 44 H 0.11 5.07 7.65 -2.91 -0.02 5.05 16 Total: -1.00 -79.14 378.97 1.04 -78.10 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -0.28 Total: 15.84 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 4.66 Total: -27.80 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -2.21 Total: -73.98 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -1.93 Total: -31.64 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.33 kcal Atomic # 16 Polarization: -5.75 SS G_CDS: -1.09 Total: -6.85 kcal Total: -79.14 1.04 -78.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305085215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.253 kcal (2) G-P(sol) polarization free energy of solvation -79.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds