Wall clock time and date at job start Tue Mar 31 2020 14:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47358 * 2 1 4 4 C 1.53000 * 109.47323 * 239.99822 * 2 1 3 5 5 C 1.52997 * 109.46929 * 295.00368 * 4 2 1 6 6 H 1.08995 * 109.47595 * 54.99565 * 5 4 2 7 7 O 1.42911 * 109.47121 * 294.99537 * 5 4 2 8 8 C 1.53002 * 109.47009 * 174.99989 * 5 4 2 9 9 N 1.46503 * 109.47044 * 184.99917 * 8 5 4 10 10 C 1.34780 * 120.00199 * 180.02562 * 9 8 5 11 11 O 1.21556 * 119.99453 * 359.97438 * 10 9 8 12 12 C 1.47853 * 120.00119 * 179.97438 * 10 9 8 13 13 C 1.39671 * 120.10314 * 359.72254 * 12 10 9 14 14 C 1.38046 * 120.04159 * 179.78731 * 13 12 10 15 15 C 1.38184 * 120.24002 * 0.46917 * 14 13 12 16 16 C 1.39175 * 120.20156 * 359.78296 * 15 14 13 17 17 S 1.76203 * 120.02068 * 179.97438 * 16 15 14 18 18 C 1.76191 * 100.00080 * 265.53167 * 17 16 15 19 19 H 1.07996 * 120.00562 * 5.11925 * 18 17 16 20 20 C 1.38733 * 120.00010 * 185.11887 * 18 17 16 21 21 N 1.31622 * 119.99716 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47269 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47000 * 120.00042 * 22 20 18 25 25 H 1.48496 * 109.47139 * 239.99723 * 22 20 18 26 26 C 1.38877 * 119.96323 * 359.97438 * 16 15 14 27 27 H 1.08998 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47126 * 300.00353 * 1 2 3 29 29 H 1.09005 * 109.47013 * 59.99807 * 1 2 3 30 30 H 1.09001 * 109.47098 * 119.99711 * 2 1 3 31 31 H 1.08998 * 109.47290 * 59.99747 * 3 2 1 32 32 H 1.09000 * 109.47179 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46780 * 299.99906 * 3 2 1 34 34 H 1.08995 * 109.46980 * 55.00167 * 4 2 1 35 35 H 1.08995 * 109.47326 * 175.00345 * 4 2 1 36 36 H 0.96695 * 113.99717 * 300.00392 * 7 5 4 37 37 H 1.08991 * 109.47112 * 304.99562 * 8 5 4 38 38 H 1.09002 * 109.47095 * 65.00241 * 8 5 4 39 39 H 0.97003 * 119.99654 * 359.97438 * 9 8 5 40 40 H 1.08000 * 119.98163 * 0.02562 * 13 12 10 41 41 H 1.07993 * 119.88071 * 180.21148 * 14 13 12 42 42 H 1.07995 * 119.89470 * 179.77019 * 15 14 13 43 43 H 0.97007 * 119.99576 * 180.02562 * 21 20 18 44 44 H 1.07992 * 120.12564 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 -2.1954 -1.1879 6 1 0.5563 -2.2707 -1.0526 7 8 2.2980 -2.8262 -0.0901 8 6 2.0353 -2.8889 -2.4917 9 7 1.5425 -4.2685 -2.4823 10 6 1.7788 -5.0757 -3.5354 11 8 2.4005 -4.6589 -4.4932 12 6 1.2820 -6.4682 -3.5257 13 6 0.5724 -6.9511 -2.4238 14 6 0.1053 -8.2501 -2.4179 15 6 0.3451 -9.0809 -3.4958 16 6 1.0555 -8.6117 -4.5968 17 16 1.3592 -9.6753 -5.9684 18 6 2.9563 -10.2818 -5.5376 19 1 3.3966 -10.0166 -4.5878 20 6 3.6485 -11.1000 -6.4186 21 7 3.1117 -11.4236 -7.5760 22 14 5.3416 -11.7435 -5.9616 23 1 5.7166 -11.2386 -4.6164 24 1 5.3188 -13.2283 -5.9450 25 1 6.3354 -11.2749 -6.9605 26 6 1.5250 -7.3049 -4.6138 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6054 -0.2618 -2.1369 35 1 3.1263 -0.6444 -1.2951 36 1 3.2630 -2.7973 -0.1442 37 1 1.6009 -2.3537 -3.3360 38 1 3.1215 -2.8917 -2.5832 39 1 1.0467 -4.6011 -1.7178 40 1 0.3857 -6.3067 -1.5774 41 1 -0.4460 -8.6198 -1.5660 42 1 -0.0198 -10.0972 -3.4837 43 1 3.5956 -11.9960 -8.1919 44 1 2.0762 -6.9380 -5.4669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305085216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:58 Heat of formation + Delta-G solvation = -89.609598 kcal Electronic energy + Delta-G solvation = -23847.379746 eV Core-core repulsion = 20275.726509 eV Total energy + Delta-G solvation = -3571.653237 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08245 -38.83190 -37.70128 -35.74772 -34.44059 -32.50250 -31.36342 -30.56042 -30.00031 -27.61115 -26.48707 -25.56504 -23.46086 -22.46808 -21.96667 -20.66014 -20.14908 -18.39728 -17.47484 -16.85185 -16.60744 -16.00913 -15.61800 -15.27930 -15.01785 -14.84628 -14.70234 -14.38944 -14.31024 -14.02411 -13.58762 -13.35071 -13.25847 -12.92848 -12.71058 -12.54618 -12.20869 -12.14356 -11.79039 -11.63835 -11.48034 -11.14836 -11.11412 -11.09570 -11.08340 -10.90380 -10.69813 -10.42659 -9.95881 -9.75198 -9.20503 -9.16359 -8.99956 -8.57461 -8.01922 -6.70588 -6.28256 -4.01954 1.17386 1.67851 3.03084 3.04860 3.19955 3.23559 3.29374 3.48159 3.95868 4.09704 4.18332 4.27174 4.37384 4.47205 4.67047 4.73215 4.88233 4.94418 5.08039 5.11569 5.15739 5.24108 5.25854 5.28842 5.40780 5.42494 5.46600 5.48294 5.52325 5.64610 5.74240 5.76187 5.88438 5.91369 5.98203 6.00002 6.26345 6.31896 6.59748 6.65150 6.94081 7.20044 7.20657 7.49193 7.58442 8.28369 8.33594 9.17731 10.78504 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021988 B = 0.002252 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.108001 B =12432.096024 C =12941.530583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.145 4.145 5 C 0.093 3.907 6 H 0.108 0.892 7 O -0.557 6.557 8 C 0.088 3.912 9 N -0.727 5.727 10 C 0.563 3.437 11 O -0.537 6.537 12 C -0.155 4.155 13 C -0.089 4.089 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.108 4.108 17 S -0.035 6.035 18 C -0.519 4.519 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.019 4.019 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.377 0.623 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.403 0.597 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.131 0.869 43 H 0.269 0.731 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 20.672 16.635 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.183 4.183 5 C 0.034 3.966 6 H 0.126 0.874 7 O -0.363 6.363 8 C -0.036 4.036 9 N -0.381 5.381 10 C 0.351 3.649 11 O -0.414 6.414 12 C -0.160 4.160 13 C -0.108 4.108 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.218 4.218 17 S 0.199 5.801 18 C -0.666 4.666 19 H 0.094 0.906 20 C -0.137 4.137 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.040 4.040 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.225 0.775 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.239 0.761 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.948 20.506 14.984 26.085 hybrid contribution 2.127 -0.072 1.458 2.580 sum -3.821 20.434 16.442 26.505 Atomic orbital electron populations 1.21911 0.95243 1.01913 1.01762 1.21039 0.95946 0.95889 0.98330 1.21853 1.00933 0.96004 1.01785 1.22287 1.01836 0.94958 0.99243 1.22277 0.98376 0.90929 0.85034 0.87438 1.86586 1.23938 1.80146 1.45625 1.22065 1.00255 0.82770 0.98552 1.45782 1.58901 1.12392 1.21024 1.18436 0.78972 0.85449 0.81993 1.90773 1.40428 1.76023 1.34176 1.19844 1.05047 0.93645 0.97440 1.21153 0.97046 0.96077 0.96506 1.21065 1.02033 0.93938 0.99065 1.21962 0.94655 0.99446 0.91521 1.22851 0.99818 0.97644 1.01511 1.83600 1.24189 1.49690 1.22600 1.22883 1.02331 1.35054 1.06353 0.90564 1.25013 0.98701 0.95598 0.94351 1.70000 1.37994 1.34608 1.07928 0.86061 0.81983 0.78479 0.78750 1.19505 1.20477 1.20440 1.21948 0.93748 0.91881 0.96469 0.92385 0.92697 0.92720 0.90396 0.92675 0.92738 0.92721 0.90552 0.91130 0.77531 0.90591 0.91179 0.76136 0.86456 0.85831 0.85061 0.92118 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.95 37.15 0.33 -0.51 16 2 C -0.09 -0.53 2.87 -90.62 -0.26 -0.79 16 3 C -0.15 -0.76 9.19 37.16 0.34 -0.42 16 4 C -0.14 -0.81 4.36 -26.73 -0.12 -0.92 16 5 C 0.09 0.63 2.86 -26.73 -0.08 0.55 16 6 H 0.11 0.72 6.34 -51.93 -0.33 0.39 16 7 O -0.56 -4.10 12.74 -35.23 -0.45 -4.55 16 8 C 0.09 0.82 5.31 -4.04 -0.02 0.80 16 9 N -0.73 -8.42 5.45 -61.25 -0.33 -8.76 16 10 C 0.56 9.18 7.77 -12.32 -0.10 9.09 16 11 O -0.54 -10.71 16.34 5.32 0.09 -10.63 16 12 C -0.15 -2.65 5.87 -105.00 -0.62 -3.27 16 13 C -0.09 -1.24 9.54 -39.12 -0.37 -1.62 16 14 C -0.14 -2.06 10.02 -39.67 -0.40 -2.45 16 15 C -0.05 -0.99 9.79 -39.25 -0.38 -1.38 16 16 C -0.11 -2.33 5.45 -39.00 -0.21 -2.54 16 17 S -0.04 -0.92 21.40 -107.50 -2.30 -3.22 16 18 C -0.52 -14.76 9.46 30.92 0.29 -14.46 16 19 H 0.08 2.16 7.79 -52.49 -0.41 1.75 16 20 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 21 N -0.87 -25.57 13.22 55.49 0.73 -24.83 16 22 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 27 H 0.06 0.34 6.46 -51.93 -0.34 0.00 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.50 7.69 -51.93 -0.40 0.10 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.38 1.86 9.04 45.56 0.41 2.27 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.40 3.86 6.50 -40.82 -0.27 3.59 16 40 H 0.12 1.20 6.40 -52.49 -0.34 0.86 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.14 3.09 7.65 -52.49 -0.40 2.69 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -33.55 381.92 -9.43 -42.98 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.85 Total: 3.40 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.05 Total: -16.73 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.40 Total: -33.59 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.36 Total: -15.17 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.55 -9.43 -42.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305085216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.634 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds