Wall clock time and date at job start Tue Mar 31 2020 14:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47358 * 2 1 4 4 C 1.53000 * 109.47323 * 239.99822 * 2 1 3 5 5 C 1.52997 * 109.46929 * 295.00368 * 4 2 1 6 6 H 1.08995 * 109.47595 * 54.99565 * 5 4 2 7 7 O 1.42911 * 109.47121 * 294.99537 * 5 4 2 8 8 C 1.53002 * 109.47009 * 174.99989 * 5 4 2 9 9 N 1.46503 * 109.47044 * 184.99917 * 8 5 4 10 10 C 1.34780 * 120.00199 * 180.02562 * 9 8 5 11 11 O 1.21556 * 119.99453 * 359.97438 * 10 9 8 12 12 C 1.47853 * 120.00119 * 179.97438 * 10 9 8 13 13 C 1.39671 * 120.10314 * 359.72254 * 12 10 9 14 14 C 1.38046 * 120.04159 * 179.78731 * 13 12 10 15 15 C 1.38184 * 120.24002 * 0.46917 * 14 13 12 16 16 C 1.39175 * 120.20156 * 359.78296 * 15 14 13 17 17 S 1.76203 * 120.02068 * 179.97438 * 16 15 14 18 18 C 1.76191 * 100.00080 * 265.53167 * 17 16 15 19 19 H 1.07996 * 120.00562 * 5.11925 * 18 17 16 20 20 C 1.38733 * 120.00010 * 185.11887 * 18 17 16 21 21 N 1.31622 * 119.99716 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47269 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47000 * 120.00042 * 22 20 18 25 25 H 1.48496 * 109.47139 * 239.99723 * 22 20 18 26 26 C 1.38877 * 119.96323 * 359.97438 * 16 15 14 27 27 H 1.08998 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47126 * 300.00353 * 1 2 3 29 29 H 1.09005 * 109.47013 * 59.99807 * 1 2 3 30 30 H 1.09001 * 109.47098 * 119.99711 * 2 1 3 31 31 H 1.08998 * 109.47290 * 59.99747 * 3 2 1 32 32 H 1.09000 * 109.47179 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46780 * 299.99906 * 3 2 1 34 34 H 1.08995 * 109.46980 * 55.00167 * 4 2 1 35 35 H 1.08995 * 109.47326 * 175.00345 * 4 2 1 36 36 H 0.96695 * 113.99717 * 300.00392 * 7 5 4 37 37 H 1.08991 * 109.47112 * 304.99562 * 8 5 4 38 38 H 1.09002 * 109.47095 * 65.00241 * 8 5 4 39 39 H 0.97003 * 119.99654 * 359.97438 * 9 8 5 40 40 H 1.08000 * 119.98163 * 0.02562 * 13 12 10 41 41 H 1.07993 * 119.88071 * 180.21148 * 14 13 12 42 42 H 1.07995 * 119.89470 * 179.77019 * 15 14 13 43 43 H 0.97007 * 119.99576 * 180.02562 * 21 20 18 44 44 H 1.07992 * 120.12564 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 -2.1954 -1.1879 6 1 0.5563 -2.2707 -1.0526 7 8 2.2980 -2.8262 -0.0901 8 6 2.0353 -2.8889 -2.4917 9 7 1.5425 -4.2685 -2.4823 10 6 1.7788 -5.0757 -3.5354 11 8 2.4005 -4.6589 -4.4932 12 6 1.2820 -6.4682 -3.5257 13 6 0.5724 -6.9511 -2.4238 14 6 0.1053 -8.2501 -2.4179 15 6 0.3451 -9.0809 -3.4958 16 6 1.0555 -8.6117 -4.5968 17 16 1.3592 -9.6753 -5.9684 18 6 2.9563 -10.2818 -5.5376 19 1 3.3966 -10.0166 -4.5878 20 6 3.6485 -11.1000 -6.4186 21 7 3.1117 -11.4236 -7.5760 22 14 5.3416 -11.7435 -5.9616 23 1 5.7166 -11.2386 -4.6164 24 1 5.3188 -13.2283 -5.9450 25 1 6.3354 -11.2749 -6.9605 26 6 1.5250 -7.3049 -4.6138 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6054 -0.2618 -2.1369 35 1 3.1263 -0.6444 -1.2951 36 1 3.2630 -2.7973 -0.1442 37 1 1.6009 -2.3537 -3.3360 38 1 3.1215 -2.8917 -2.5832 39 1 1.0467 -4.6011 -1.7178 40 1 0.3857 -6.3067 -1.5774 41 1 -0.4460 -8.6198 -1.5660 42 1 -0.0198 -10.0972 -3.4837 43 1 3.5956 -11.9960 -8.1919 44 1 2.0762 -6.9380 -5.4669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305085216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:58 Heat of formation + Delta-G solvation = -112.914480 kcal Electronic energy + Delta-G solvation = -23848.390322 eV Core-core repulsion = 20275.726509 eV Total energy + Delta-G solvation = -3572.663813 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28888 -39.61980 -38.92111 -36.31099 -35.42588 -34.66409 -32.55112 -31.93502 -30.82978 -28.01642 -27.76013 -27.25705 -24.65656 -23.65473 -22.84620 -21.70731 -20.83125 -20.02291 -19.08963 -17.67214 -17.32232 -17.18660 -16.94690 -16.72264 -16.41053 -16.08732 -15.66820 -15.56384 -15.18227 -14.87640 -14.64977 -14.63144 -14.50736 -14.01853 -13.72426 -13.29130 -13.22559 -13.06935 -12.99038 -12.98261 -12.66947 -12.62274 -12.39956 -12.26469 -11.94551 -11.74647 -11.51485 -11.38354 -11.31759 -11.22958 -10.87420 -10.71352 -10.31234 -9.90935 -9.70756 -8.81440 -8.40406 -6.20355 -0.19486 0.24481 1.28800 1.35604 1.45765 1.64097 1.77648 2.03483 2.23441 2.79227 2.92501 3.40739 3.42551 3.58406 3.66258 3.90405 3.93692 4.01855 4.03910 4.16418 4.22293 4.35267 4.44593 4.47799 4.59537 4.64329 4.74495 4.83143 4.86300 4.91648 4.97446 5.02574 5.10884 5.15759 5.21061 5.27695 5.32222 5.37497 5.37790 5.49207 5.49625 5.56005 5.85344 6.14967 6.42889 6.77488 6.99962 7.10926 8.66886 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021988 B = 0.002252 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.108001 B =12432.096024 C =12941.530583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.142 4.142 5 C 0.108 3.892 6 H 0.114 0.886 7 O -0.566 6.566 8 C 0.084 3.916 9 N -0.703 5.703 10 C 0.560 3.440 11 O -0.584 6.584 12 C -0.158 4.158 13 C -0.063 4.063 14 C -0.121 4.121 15 C -0.062 4.062 16 C -0.130 4.130 17 S -0.095 6.095 18 C -0.536 4.536 19 H 0.067 0.933 20 C 0.018 3.982 21 N -0.906 5.906 22 Si 0.994 3.006 23 H -0.266 1.266 24 H -0.265 1.265 25 H -0.272 1.272 26 C -0.045 4.045 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.388 0.612 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.416 0.584 40 H 0.171 0.829 41 H 0.176 0.824 42 H 0.136 0.864 43 H 0.274 0.726 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 21.781 20.378 30.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.180 4.180 5 C 0.049 3.951 6 H 0.132 0.868 7 O -0.374 6.374 8 C -0.039 4.039 9 N -0.355 5.355 10 C 0.349 3.651 11 O -0.465 6.465 12 C -0.163 4.163 13 C -0.081 4.081 14 C -0.140 4.140 15 C -0.083 4.083 16 C -0.241 4.241 17 S 0.140 5.860 18 C -0.683 4.683 19 H 0.085 0.915 20 C -0.187 4.187 21 N -0.542 5.542 22 Si 0.815 3.185 23 H -0.191 1.191 24 H -0.190 1.190 25 H -0.197 1.197 26 C -0.067 4.067 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.255 0.745 40 H 0.189 0.811 41 H 0.193 0.807 42 H 0.154 0.846 43 H 0.083 0.917 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.363 21.635 18.776 29.345 hybrid contribution 2.152 -0.270 0.429 2.211 sum -4.211 21.365 19.205 29.035 Atomic orbital electron populations 1.21924 0.95172 1.01900 1.01935 1.20998 0.95974 0.96007 0.97907 1.21848 1.01040 0.95755 1.01915 1.22256 1.02244 0.94088 0.99402 1.22158 0.98610 0.91053 0.83306 0.86804 1.86563 1.25050 1.80214 1.45525 1.22276 0.99975 0.81473 1.00209 1.45618 1.57476 1.12677 1.19768 1.18399 0.78707 0.85550 0.82475 1.90756 1.42738 1.76764 1.36233 1.19963 1.05276 0.93784 0.97243 1.21704 0.93724 0.96457 0.96231 1.21558 1.00499 0.93226 0.98728 1.22080 0.94182 1.00515 0.91527 1.22513 1.03161 0.97115 1.01355 1.83474 1.23854 1.51593 1.27063 1.23096 1.03352 1.35592 1.06248 0.91497 1.26029 1.02914 0.95614 0.94154 1.70117 1.39769 1.35322 1.08985 0.84980 0.76601 0.78355 0.78537 1.19051 1.18968 1.19730 1.21631 0.95285 0.92509 0.97282 0.92450 0.92582 0.92567 0.90975 0.92497 0.92599 0.92673 0.90331 0.90620 0.76303 0.90953 0.91661 0.74496 0.81146 0.80692 0.84635 0.91684 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.95 71.98 0.64 -0.72 16 2 C -0.09 -0.81 2.87 -10.79 -0.03 -0.85 16 3 C -0.15 -1.25 9.19 71.98 0.66 -0.59 16 4 C -0.14 -1.25 4.36 30.59 0.13 -1.12 16 5 C 0.11 1.14 2.86 30.59 0.09 1.23 16 6 H 0.11 1.12 6.34 -2.39 -0.02 1.10 16 7 O -0.57 -6.48 12.74 -148.98 -1.90 -8.38 16 8 C 0.08 1.41 5.31 86.38 0.46 1.87 16 9 N -0.70 -14.39 5.45 -465.96 -2.54 -16.93 16 10 C 0.56 17.82 7.77 86.79 0.67 18.49 16 11 O -0.58 -23.97 16.34 -3.89 -0.06 -24.04 16 12 C -0.16 -5.23 5.87 -20.11 -0.12 -5.35 16 13 C -0.06 -1.48 9.54 22.57 0.22 -1.27 16 14 C -0.12 -2.98 10.02 22.21 0.22 -2.76 16 15 C -0.06 -2.18 9.79 22.48 0.22 -1.96 16 16 C -0.13 -5.84 5.45 22.65 0.12 -5.72 16 17 S -0.09 -5.23 21.40 -56.49 -1.21 -6.44 16 18 C -0.54 -31.83 9.46 67.94 0.64 -31.18 16 19 H 0.07 3.95 7.79 -2.91 -0.02 3.92 16 20 C 0.02 1.05 5.49 84.84 0.47 1.51 16 21 N -0.91 -55.05 13.22 21.64 0.29 -54.76 16 22 Si 0.99 45.09 29.55 68.60 2.03 47.11 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 C -0.05 -1.95 9.34 22.70 0.21 -1.74 16 27 H 0.06 0.52 6.46 -2.39 -0.02 0.50 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.07 0.76 7.69 -2.39 -0.02 0.74 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.39 2.70 9.04 -74.06 -0.67 2.03 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.42 6.08 6.50 -92.71 -0.60 5.47 16 40 H 0.17 2.26 6.40 -2.91 -0.02 2.25 16 41 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 42 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 43 H 0.27 15.37 8.31 -92.70 -0.77 14.59 16 44 H 0.10 5.05 7.65 -2.91 -0.02 5.03 16 Total: -1.00 -78.66 381.92 0.96 -77.70 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.26 Total: 15.88 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 4.61 Total: -30.14 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -2.26 Total: -71.69 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -1.96 Total: -32.42 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -1.21 Total: -6.44 kcal Total: -78.66 0.96 -77.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305085216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.218 kcal (2) G-P(sol) polarization free energy of solvation -78.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds