Wall clock time and date at job start Tue Mar 31 2020 14:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47066 * 2 1 4 4 C 1.52995 * 109.47332 * 120.00077 * 2 1 3 5 5 H 1.09003 * 109.47565 * 185.00174 * 4 2 1 6 6 C 1.52996 * 109.47151 * 65.00130 * 4 2 1 7 7 C 1.52999 * 109.47196 * 174.99991 * 6 4 2 8 8 O 1.42910 * 109.47107 * 180.02562 * 7 6 4 9 9 N 1.46493 * 109.46994 * 305.00237 * 4 2 1 10 10 C 1.34783 * 120.00266 * 274.99662 * 9 4 2 11 11 O 1.21554 * 119.99505 * 0.02562 * 10 9 4 12 12 C 1.47857 * 120.00551 * 180.02562 * 10 9 4 13 13 C 1.39683 * 120.10031 * 0.02562 * 12 10 9 14 14 C 1.38039 * 120.04013 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.24026 * 359.67736 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.59964 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76206 * 100.00127 * 265.25129 * 17 16 15 19 19 H 1.07994 * 120.00039 * 5.12620 * 18 17 16 20 20 C 1.38732 * 119.99565 * 185.12088 * 18 17 16 21 21 N 1.31631 * 119.99351 * 180.02562 * 20 18 17 22 22 Si 1.86791 * 120.00533 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46962 * 89.99756 * 22 20 18 24 24 H 1.48502 * 109.47274 * 210.00026 * 22 20 18 25 25 H 1.48499 * 109.47299 * 330.00015 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 H 1.08995 * 109.47070 * 299.99619 * 1 2 3 28 28 H 1.08995 * 109.47206 * 59.99908 * 1 2 3 29 29 H 1.09006 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47348 * 240.00529 * 2 1 3 31 31 H 1.08996 * 109.46663 * 300.00050 * 3 2 1 32 32 H 1.08995 * 109.46864 * 60.00255 * 3 2 1 33 33 H 1.09001 * 109.47178 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47505 * 295.00103 * 6 4 2 35 35 H 1.09006 * 109.47356 * 55.00005 * 6 4 2 36 36 H 1.09003 * 109.47483 * 299.99846 * 7 6 4 37 37 H 1.09001 * 109.47000 * 60.00235 * 7 6 4 38 38 H 0.96697 * 113.99618 * 180.02562 * 8 7 6 39 39 H 0.97000 * 120.00523 * 95.00365 * 9 4 2 40 40 H 1.08002 * 119.97685 * 359.97438 * 13 12 10 41 41 H 1.07999 * 119.87763 * 179.97438 * 14 13 12 42 42 H 1.08006 * 119.89818 * 180.31426 * 15 14 13 43 43 H 0.96995 * 120.00040 * 180.02562 * 21 20 18 44 44 H 1.07994 * 120.12344 * 180.29777 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1264 -0.6443 1.2951 6 6 1.6353 -2.1954 1.1879 7 6 2.2504 -2.9428 2.3728 8 8 1.8728 -4.3200 2.3152 9 7 1.4559 -0.1037 2.4423 10 6 2.0349 0.9828 2.9909 11 8 3.0415 1.4505 2.4954 12 6 1.4456 1.6058 4.1954 13 6 0.2892 1.0698 4.7669 14 6 -0.2595 1.6521 5.8917 15 6 0.3348 2.7620 6.4611 16 6 1.4840 3.3079 5.8967 17 16 2.2332 4.7281 6.6220 18 6 1.4898 5.9962 5.6504 19 1 0.7276 5.7457 4.9275 20 6 1.8836 7.3163 5.8142 21 7 1.3278 8.2636 5.0887 22 14 3.2024 7.7494 7.0641 23 1 4.5371 7.6918 6.4156 24 1 2.9624 9.1204 7.5821 25 1 3.1562 6.7804 8.1885 26 6 2.0429 2.7291 4.7648 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 0.5492 -2.2762 1.2315 35 1 1.9950 -2.6326 0.2563 36 1 3.3365 -2.8622 2.3291 37 1 1.8907 -2.5058 3.3043 38 1 2.2278 -4.8556 3.0378 39 1 0.6525 -0.4767 2.8376 40 1 -0.1758 0.1992 4.3284 41 1 -1.1539 1.2357 6.3312 42 1 -0.0964 3.2101 7.3441 43 1 1.6034 9.1866 5.2029 44 1 2.9372 3.1476 4.3274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305125863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:47 Heat of formation + Delta-G solvation = -103.096366 kcal Electronic energy + Delta-G solvation = -24924.875149 eV Core-core repulsion = 21352.637081 eV Total energy + Delta-G solvation = -3572.238068 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56549 -39.62904 -38.32084 -37.20739 -34.73022 -34.40743 -32.62108 -32.00275 -31.46942 -28.07376 -27.93404 -26.76782 -24.86813 -23.72137 -22.61888 -21.86686 -20.68592 -20.08050 -18.99777 -18.26447 -17.52233 -17.15708 -16.89163 -16.79762 -16.49474 -16.08898 -15.66196 -15.31417 -15.12563 -15.00912 -14.74795 -14.67998 -14.25756 -14.14208 -13.90050 -13.61763 -13.20028 -13.09088 -12.98962 -12.87580 -12.67049 -12.56251 -12.33842 -12.27646 -11.91741 -11.86696 -11.74144 -11.57238 -11.23803 -11.11942 -10.91606 -10.83878 -10.14182 -9.89649 -9.74611 -9.15460 -8.55184 -6.29271 -0.19581 0.20944 1.05610 1.30147 1.42733 1.65486 1.81191 2.10850 2.20514 2.60239 2.83059 2.96925 3.15438 3.67259 3.84326 3.91501 3.95407 4.01580 4.08214 4.15063 4.27071 4.31694 4.44993 4.47366 4.58562 4.61512 4.68734 4.75506 4.78119 4.89957 4.96570 5.00346 5.06524 5.16052 5.17264 5.21104 5.29846 5.37040 5.43143 5.44793 5.55385 5.67496 5.83018 6.08753 6.50587 6.87304 6.87721 7.20343 8.58562 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017897 B = 0.003055 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.124981 B = 9162.776575 C = 9828.579550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.140 4.140 4 C 0.156 3.844 5 H 0.073 0.927 6 C -0.118 4.118 7 C 0.073 3.927 8 O -0.591 6.591 9 N -0.701 5.701 10 C 0.564 3.436 11 O -0.568 6.568 12 C -0.157 4.157 13 C -0.061 4.061 14 C -0.122 4.122 15 C -0.061 4.061 16 C -0.119 4.119 17 S -0.116 6.116 18 C -0.523 4.523 19 H 0.045 0.955 20 C 0.040 3.960 21 N -0.920 5.920 22 Si 0.922 3.078 23 H -0.263 1.263 24 H -0.257 1.257 25 H -0.226 1.226 26 C -0.043 4.043 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.397 0.603 39 H 0.413 0.587 40 H 0.173 0.827 41 H 0.176 0.824 42 H 0.139 0.861 43 H 0.278 0.722 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.575 -26.142 -4.646 26.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.197 4.197 4 C 0.051 3.949 5 H 0.091 0.909 6 C -0.155 4.155 7 C -0.004 4.004 8 O -0.399 6.399 9 N -0.354 5.354 10 C 0.352 3.648 11 O -0.448 6.448 12 C -0.162 4.162 13 C -0.080 4.080 14 C -0.141 4.141 15 C -0.082 4.082 16 C -0.230 4.230 17 S 0.117 5.883 18 C -0.670 4.670 19 H 0.063 0.937 20 C -0.165 4.165 21 N -0.558 5.558 22 Si 0.743 3.257 23 H -0.187 1.187 24 H -0.181 1.181 25 H -0.149 1.149 26 C -0.065 4.065 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.247 0.753 39 H 0.251 0.749 40 H 0.190 0.810 41 H 0.193 0.807 42 H 0.156 0.844 43 H 0.087 0.913 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.408 -25.301 -4.711 25.848 hybrid contribution -0.157 0.959 -0.234 1.000 sum -2.565 -24.342 -4.945 24.971 Atomic orbital electron populations 1.21849 0.93836 1.02828 1.01794 1.21520 0.97256 0.95256 0.97978 1.21840 1.00395 0.97112 1.00385 1.20990 0.98317 0.91577 0.83977 0.90881 1.21749 1.03032 0.91112 0.99646 1.22177 0.98117 0.81742 0.98404 1.86394 1.77872 1.20698 1.54954 1.45773 1.30758 1.29167 1.29722 1.18215 0.83258 0.80353 0.82961 1.90779 1.26788 1.63466 1.63740 1.20021 0.99501 0.98482 0.98167 1.21743 0.92415 0.99134 0.94664 1.21554 1.01196 0.95181 0.96180 1.22070 0.91955 0.95120 0.99005 1.22065 1.00812 1.00139 0.99961 1.82610 1.61493 0.96585 1.47571 1.22368 1.25480 0.93717 1.25435 0.93692 1.25737 0.98324 0.94910 0.97490 1.70035 1.43546 1.01611 1.40579 0.85766 0.79190 0.80195 0.80575 1.18739 1.18132 1.14931 1.21633 0.98120 0.93571 0.93176 0.93331 0.92732 0.90267 0.88629 0.93063 0.94973 0.93950 0.89002 0.88877 0.93950 0.92865 0.75313 0.74873 0.81018 0.80673 0.84363 0.91259 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.74 71.98 0.63 -1.50 16 2 C -0.10 -1.76 2.74 -10.79 -0.03 -1.79 16 3 C -0.14 -3.64 7.79 71.98 0.56 -3.08 16 4 C 0.16 2.62 1.95 44.99 0.09 2.70 16 5 H 0.07 1.56 7.58 -2.39 -0.02 1.54 16 6 C -0.12 -1.35 4.75 30.59 0.15 -1.20 16 7 C 0.07 0.88 6.93 71.98 0.50 1.38 16 8 O -0.59 -7.32 13.66 -148.98 -2.04 -9.36 16 9 N -0.70 -12.90 3.45 -445.41 -1.54 -14.44 16 10 C 0.56 16.42 6.34 86.79 0.55 16.97 16 11 O -0.57 -21.40 13.48 -3.89 -0.05 -21.45 16 12 C -0.16 -4.85 5.87 -20.11 -0.12 -4.97 16 13 C -0.06 -1.32 9.54 22.57 0.22 -1.11 16 14 C -0.12 -2.79 10.02 22.21 0.22 -2.57 16 15 C -0.06 -2.01 9.79 22.48 0.22 -1.79 16 16 C -0.12 -5.02 5.45 22.65 0.12 -4.90 16 17 S -0.12 -5.82 19.38 -56.49 -1.09 -6.92 16 18 C -0.52 -31.61 10.01 67.94 0.68 -30.93 16 19 H 0.04 3.01 8.02 -2.91 -0.02 2.99 16 20 C 0.04 2.41 5.50 84.84 0.47 2.88 16 21 N -0.92 -57.54 13.97 21.64 0.30 -57.24 16 22 Si 0.92 44.33 27.74 68.60 1.90 46.23 16 23 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.23 -10.29 6.74 99.48 0.67 -9.62 16 26 C -0.04 -1.77 9.34 22.70 0.21 -1.55 16 27 H 0.05 0.80 7.47 -2.39 -0.02 0.78 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.79 6.68 -2.38 -0.02 0.78 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.03 1.02 5.64 -2.39 -0.01 1.00 16 33 H 0.04 1.22 7.85 -2.39 -0.02 1.20 16 34 H 0.09 0.86 6.81 -2.39 -0.02 0.84 16 35 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 0.58 7.75 -2.39 -0.02 0.56 16 38 H 0.40 1.77 9.12 -74.06 -0.68 1.10 16 39 H 0.41 4.91 6.63 -92.71 -0.61 4.29 16 40 H 0.17 1.87 6.40 -2.91 -0.02 1.85 16 41 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 43 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 44 H 0.11 4.93 7.65 -2.91 -0.02 4.90 16 Total: -1.00 -79.92 370.12 1.65 -78.27 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -0.30 Total: 16.37 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 4.46 Total: -31.47 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -1.24 Total: -71.67 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -2.09 Total: -30.81 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -1.09 Total: -6.92 kcal Total: -79.92 1.65 -78.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305125863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.825 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds