Wall clock time and date at job start Tue Mar 31 2020 14:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47382 * 2 1 4 4 C 1.53001 * 109.46808 * 240.00046 * 2 1 3 5 5 C 1.52992 * 109.47419 * 60.00124 * 4 2 1 6 6 O 1.42896 * 109.47486 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46801 * 120.00383 * 2 1 3 8 8 N 1.46492 * 109.47018 * 299.99643 * 7 2 1 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 2 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47166 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46857 * 120.00071 * 21 19 17 24 24 H 1.48498 * 109.46876 * 239.99864 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09002 * 109.46676 * 299.99842 * 1 2 3 27 27 H 1.08998 * 109.46830 * 59.99503 * 1 2 3 28 28 H 1.08994 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46733 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47116 * 300.00382 * 3 2 1 31 31 H 1.09003 * 109.46647 * 60.00106 * 3 2 1 32 32 H 1.08998 * 109.46951 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.46862 * 300.00026 * 4 2 1 34 34 H 1.08998 * 109.47535 * 300.00225 * 5 4 2 35 35 H 1.09002 * 109.46681 * 60.00001 * 5 4 2 36 36 H 0.96701 * 114.00141 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.46655 * 179.97438 * 7 2 1 38 38 H 1.09002 * 109.47164 * 59.99583 * 7 2 1 39 39 H 0.96996 * 120.00373 * 359.97438 * 8 7 2 40 40 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 42 42 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 43 43 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -0.0001 -2.4985 6 8 2.0067 -0.6733 -3.6652 7 6 2.0400 -0.7214 1.2492 8 7 1.5517 -0.0308 2.4454 9 6 1.8776 -0.4910 3.6695 10 8 2.5764 -1.4793 3.7810 11 6 1.3852 0.2064 4.8769 12 6 0.5827 1.3425 4.7512 13 6 0.1241 1.9929 5.8792 14 6 0.4505 1.5203 7.1359 15 6 1.2543 0.3924 7.2729 16 16 1.6742 -0.2013 8.8778 17 6 3.2311 0.5930 9.1003 18 1 3.5897 1.2949 8.3620 19 6 3.9965 0.3167 10.2239 20 7 3.5593 -0.5383 11.1240 21 14 5.6470 1.1593 10.4601 22 1 5.9068 2.0686 9.3152 23 1 5.6264 1.9435 11.7209 24 1 6.7198 0.1351 10.5315 25 6 1.7207 -0.2681 6.1438 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4423 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1299 -0.7217 -1.2491 33 1 1.6766 -1.7489 -1.2492 34 1 0.4400 0.0001 -2.4985 35 1 1.8934 1.0276 -2.4984 36 1 1.7217 -0.2695 -4.4964 37 1 3.1300 -0.7217 1.2490 38 1 1.6765 -1.7490 1.2492 39 1 0.9944 0.7581 2.3564 40 1 0.3206 1.7125 3.7709 41 1 -0.4959 2.8714 5.7789 42 1 0.0848 2.0307 8.0147 43 1 4.0947 -0.7317 11.9095 44 1 2.3412 -1.1460 6.2469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305170133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:11 Heat of formation + Delta-G solvation = -81.666943 kcal Electronic energy + Delta-G solvation = -24141.564207 eV Core-core repulsion = 20570.255389 eV Total energy + Delta-G solvation = -3571.308818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22509 -38.86726 -37.71382 -36.64983 -33.86653 -32.50654 -30.98547 -30.53450 -29.21322 -27.76995 -27.09821 -25.56957 -24.02499 -22.79414 -22.07747 -20.41275 -19.28420 -18.44101 -17.74488 -17.29032 -16.17339 -15.90444 -15.78051 -15.41935 -15.19143 -14.85045 -14.56921 -14.39985 -14.23146 -13.95497 -13.59055 -13.48136 -13.35897 -12.97681 -12.85690 -12.38587 -12.10167 -12.03128 -12.02906 -11.65748 -11.28047 -11.23201 -11.14934 -11.11949 -11.09756 -10.85201 -10.70022 -10.30037 -9.96716 -9.76900 -9.17139 -9.15434 -9.01346 -8.58560 -8.02902 -6.71126 -6.28594 -4.02397 1.16394 1.66067 3.04056 3.07622 3.19827 3.23499 3.29209 3.47398 3.78283 4.08828 4.20744 4.26028 4.31915 4.52678 4.70274 4.81260 4.92515 4.93155 5.03181 5.07782 5.10255 5.18281 5.22938 5.35441 5.36763 5.47609 5.49900 5.56431 5.57028 5.66391 5.67738 5.73683 5.87016 5.90619 5.94055 5.99307 6.24704 6.36038 6.58244 6.62737 6.92967 7.17384 7.18665 7.48832 7.58013 8.30178 8.33132 9.17393 10.78173 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.002369 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.477238 B =11818.608214 C =12354.500268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.073 4.073 3 C -0.148 4.148 4 C -0.108 4.108 5 C 0.073 3.927 6 O -0.576 6.576 7 C 0.131 3.869 8 N -0.730 5.730 9 C 0.562 3.438 10 O -0.534 6.534 11 C -0.154 4.154 12 C -0.091 4.091 13 C -0.141 4.141 14 C -0.056 4.056 15 C -0.106 4.106 16 S -0.035 6.035 17 C -0.519 4.519 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.870 5.870 21 Si 0.921 3.079 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.278 1.278 25 C -0.019 4.019 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.379 0.621 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.398 0.602 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.269 0.731 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 5.872 -25.374 27.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 C -0.206 4.206 4 C -0.146 4.146 5 C -0.005 4.005 6 O -0.382 6.382 7 C 0.007 3.993 8 N -0.384 5.384 9 C 0.351 3.649 10 O -0.411 6.411 11 C -0.158 4.158 12 C -0.110 4.110 13 C -0.161 4.161 14 C -0.077 4.077 15 C -0.217 4.217 16 S 0.199 5.801 17 C -0.666 4.666 18 H 0.094 0.906 19 C -0.136 4.136 20 N -0.505 5.505 21 Si 0.747 3.253 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.041 4.041 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.957 3.940 -23.901 25.497 hybrid contribution 1.110 2.131 -1.163 2.669 sum -6.846 6.070 -25.065 26.682 Atomic orbital electron populations 1.21988 0.93870 1.02640 1.02014 1.20738 0.96370 0.96135 0.94137 1.21991 1.01799 0.94753 1.02017 1.21450 1.01903 0.99881 0.91357 1.22326 0.97565 0.95208 0.85354 1.86478 1.77712 1.57685 1.16303 1.21327 0.99410 0.95994 0.82529 1.45914 1.54699 1.32466 1.05333 1.18411 0.79691 0.83765 0.83058 1.90779 1.37523 1.26024 1.86759 1.19863 1.03911 0.98689 0.93381 1.21108 0.96984 0.94672 0.98235 1.21051 1.01920 1.00594 0.92502 1.21955 0.94587 0.93851 0.97274 1.22859 0.99464 0.97640 1.01736 1.83607 1.25901 1.64174 1.06383 1.22877 1.04228 1.29053 1.10454 0.90569 1.25012 0.98560 0.95087 0.94988 1.69995 1.37959 1.32314 1.10245 0.86063 0.81782 0.79158 0.78281 1.19509 1.20479 1.20423 1.21957 0.94393 0.97924 0.89787 0.92309 0.92093 0.91964 0.91951 0.92078 0.92310 0.90706 0.90712 0.93312 0.93318 0.77420 0.91204 0.91194 0.76561 0.86716 0.85882 0.85069 0.92105 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 7.95 37.16 0.30 -0.59 16 2 C -0.07 -0.50 0.56 -154.51 -0.09 -0.59 16 3 C -0.15 -0.92 7.95 37.16 0.30 -0.63 16 4 C -0.11 -0.77 4.64 -26.73 -0.12 -0.89 16 5 C 0.07 0.44 6.34 37.15 0.24 0.67 16 6 O -0.58 -4.16 13.66 -35.23 -0.48 -4.64 16 7 C 0.13 1.31 4.56 -4.04 -0.02 1.29 16 8 N -0.73 -8.25 4.91 -61.24 -0.30 -8.55 16 9 C 0.56 9.09 7.77 -12.32 -0.10 8.99 16 10 O -0.53 -10.70 16.34 5.32 0.09 -10.62 16 11 C -0.15 -2.58 5.87 -105.00 -0.62 -3.20 16 12 C -0.09 -1.23 9.54 -39.12 -0.37 -1.60 16 13 C -0.14 -1.99 10.02 -39.67 -0.40 -2.39 16 14 C -0.06 -0.99 9.79 -39.25 -0.38 -1.37 16 15 C -0.11 -2.28 5.45 -39.00 -0.21 -2.49 16 16 S -0.04 -0.91 21.40 -107.50 -2.30 -3.21 16 17 C -0.52 -14.70 9.46 30.92 0.29 -14.41 16 18 H 0.08 2.15 7.79 -52.49 -0.41 1.74 16 19 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 20 N -0.87 -25.53 13.22 55.49 0.73 -24.80 16 21 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 26 H 0.06 0.34 6.86 -51.93 -0.36 -0.01 16 27 H 0.06 0.29 6.43 -51.93 -0.33 -0.04 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.30 6.43 -51.93 -0.33 -0.03 16 31 H 0.06 0.36 6.86 -51.93 -0.36 0.01 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.24 6.43 -51.93 -0.33 -0.09 16 35 H 0.05 0.25 6.43 -51.93 -0.33 -0.09 16 36 H 0.38 1.01 9.12 45.56 0.42 1.42 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.40 3.46 4.19 -40.82 -0.17 3.29 16 40 H 0.11 1.08 6.40 -52.49 -0.34 0.74 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.14 3.09 7.65 -52.49 -0.40 2.69 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -34.41 373.01 -8.78 -43.19 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.47 Total: 2.47 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -1.65 Total: -16.01 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.43 Total: -33.35 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.39 Total: -15.26 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.41 -8.78 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305170133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.474 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds