Wall clock time and date at job start Tue Mar 31 2020 14:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47382 * 2 1 4 4 C 1.53001 * 109.46808 * 240.00046 * 2 1 3 5 5 C 1.52992 * 109.47419 * 60.00124 * 4 2 1 6 6 O 1.42896 * 109.47486 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46801 * 120.00383 * 2 1 3 8 8 N 1.46492 * 109.47018 * 299.99643 * 7 2 1 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 2 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47166 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46857 * 120.00071 * 21 19 17 24 24 H 1.48498 * 109.46876 * 239.99864 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09002 * 109.46676 * 299.99842 * 1 2 3 27 27 H 1.08998 * 109.46830 * 59.99503 * 1 2 3 28 28 H 1.08994 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46733 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47116 * 300.00382 * 3 2 1 31 31 H 1.09003 * 109.46647 * 60.00106 * 3 2 1 32 32 H 1.08998 * 109.46951 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.46862 * 300.00026 * 4 2 1 34 34 H 1.08998 * 109.47535 * 300.00225 * 5 4 2 35 35 H 1.09002 * 109.46681 * 60.00001 * 5 4 2 36 36 H 0.96701 * 114.00141 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.46655 * 179.97438 * 7 2 1 38 38 H 1.09002 * 109.47164 * 59.99583 * 7 2 1 39 39 H 0.96996 * 120.00373 * 359.97438 * 8 7 2 40 40 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 42 42 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 43 43 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -0.0001 -2.4985 6 8 2.0067 -0.6733 -3.6652 7 6 2.0400 -0.7214 1.2492 8 7 1.5517 -0.0308 2.4454 9 6 1.8776 -0.4910 3.6695 10 8 2.5764 -1.4793 3.7810 11 6 1.3852 0.2064 4.8769 12 6 0.5827 1.3425 4.7512 13 6 0.1241 1.9929 5.8792 14 6 0.4505 1.5203 7.1359 15 6 1.2543 0.3924 7.2729 16 16 1.6742 -0.2013 8.8778 17 6 3.2311 0.5930 9.1003 18 1 3.5897 1.2949 8.3620 19 6 3.9965 0.3167 10.2239 20 7 3.5593 -0.5383 11.1240 21 14 5.6470 1.1593 10.4601 22 1 5.9068 2.0686 9.3152 23 1 5.6264 1.9435 11.7209 24 1 6.7198 0.1351 10.5315 25 6 1.7207 -0.2681 6.1438 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4423 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1299 -0.7217 -1.2491 33 1 1.6766 -1.7489 -1.2492 34 1 0.4400 0.0001 -2.4985 35 1 1.8934 1.0276 -2.4984 36 1 1.7217 -0.2695 -4.4964 37 1 3.1300 -0.7217 1.2490 38 1 1.6765 -1.7490 1.2492 39 1 0.9944 0.7581 2.3564 40 1 0.3206 1.7125 3.7709 41 1 -0.4959 2.8714 5.7789 42 1 0.0848 2.0307 8.0147 43 1 4.0947 -0.7317 11.9095 44 1 2.3412 -1.1460 6.2469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305170133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:10 Heat of formation + Delta-G solvation = -106.337951 kcal Electronic energy + Delta-G solvation = -24142.634022 eV Core-core repulsion = 20570.255389 eV Total energy + Delta-G solvation = -3572.378633 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.38366 -39.73256 -38.89667 -37.28291 -34.90905 -34.66454 -32.27543 -31.89985 -29.80216 -28.22104 -27.92994 -27.74455 -25.04865 -23.85189 -23.25382 -21.66185 -20.22188 -19.71673 -19.03913 -18.19367 -17.37453 -16.95077 -16.93912 -16.62244 -16.57167 -16.24885 -15.68888 -15.48219 -15.11566 -15.02947 -14.67298 -14.63146 -14.41339 -13.99433 -13.88971 -13.49745 -13.26309 -13.08064 -12.99222 -12.78069 -12.66406 -12.54440 -12.53850 -12.39312 -11.82198 -11.77889 -11.74349 -11.42543 -11.27179 -11.13842 -10.76080 -10.73186 -10.28624 -9.89879 -9.70216 -8.81365 -8.40427 -6.20313 -0.18773 0.25065 1.28677 1.35516 1.45684 1.64336 1.79179 2.04195 2.23507 2.79941 2.92531 3.30392 3.40854 3.58243 3.70187 3.75370 3.93881 4.00452 4.06091 4.21813 4.33912 4.36748 4.47162 4.49066 4.58018 4.62357 4.64659 4.74563 4.82849 4.92019 4.95780 4.99796 5.04834 5.13325 5.16499 5.21718 5.30866 5.34909 5.37717 5.40458 5.46002 5.50638 5.86170 6.14894 6.44328 6.93410 6.99967 7.12280 8.66846 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.002369 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.477238 B =11818.608214 C =12354.500268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.110 4.110 5 C 0.074 3.926 6 O -0.602 6.602 7 C 0.128 3.872 8 N -0.701 5.701 9 C 0.560 3.440 10 O -0.584 6.584 11 C -0.156 4.156 12 C -0.063 4.063 13 C -0.119 4.119 14 C -0.063 4.063 15 C -0.129 4.129 16 S -0.096 6.096 17 C -0.535 4.535 18 H 0.067 0.933 19 C 0.018 3.982 20 N -0.906 5.906 21 Si 0.993 3.007 22 H -0.266 1.266 23 H -0.264 1.264 24 H -0.273 1.273 25 C -0.046 4.046 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.415 0.585 40 H 0.173 0.827 41 H 0.178 0.822 42 H 0.136 0.864 43 H 0.274 0.726 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.645 9.374 -28.431 31.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.060 4.060 3 C -0.207 4.207 4 C -0.148 4.148 5 C -0.003 4.003 6 O -0.411 6.411 7 C 0.004 3.996 8 N -0.355 5.355 9 C 0.348 3.652 10 O -0.466 6.466 11 C -0.161 4.161 12 C -0.081 4.081 13 C -0.138 4.138 14 C -0.084 4.084 15 C -0.241 4.241 16 S 0.139 5.861 17 C -0.682 4.682 18 H 0.085 0.915 19 C -0.187 4.187 20 N -0.542 5.542 21 Si 0.815 3.185 22 H -0.190 1.190 23 H -0.189 1.189 24 H -0.198 1.198 25 C -0.068 4.068 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.247 0.753 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.255 0.745 40 H 0.191 0.809 41 H 0.195 0.805 42 H 0.154 0.846 43 H 0.083 0.917 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.420 7.480 -27.007 29.565 hybrid contribution 1.448 1.050 -0.415 1.836 sum -7.972 8.530 -27.423 29.804 Atomic orbital electron populations 1.22020 0.92535 1.02636 1.03410 1.20614 0.97237 0.96220 0.91922 1.22025 1.01267 0.94001 1.03393 1.21443 1.01135 0.99679 0.92531 1.22353 0.98349 0.95327 0.84273 1.86428 1.78277 1.58704 1.17644 1.21453 0.98711 0.96037 0.83384 1.45683 1.53432 1.32328 1.04066 1.18427 0.79329 0.83209 0.84227 1.90762 1.39972 1.28332 1.87488 1.19951 1.04400 0.99874 0.91912 1.21698 0.93563 0.91942 1.00914 1.21564 1.00643 1.01242 0.90399 1.22082 0.93925 0.92635 0.99712 1.22505 1.02657 1.00264 0.98634 1.83482 1.25669 1.65674 1.11311 1.23090 1.05283 1.29234 1.10583 0.91483 1.26028 1.02515 0.95710 0.94475 1.70114 1.39590 1.33659 1.10854 0.84985 0.76658 0.78175 0.78685 1.19018 1.18928 1.19819 1.21626 0.95746 0.97767 0.91700 0.91512 0.90089 0.92766 0.92981 0.90045 0.91579 0.92050 0.91879 0.91801 0.91944 0.75267 0.92661 0.92360 0.74511 0.80926 0.80503 0.84649 0.91696 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.95 71.98 0.57 -0.65 16 2 C -0.06 -0.67 0.56 -52.18 -0.03 -0.69 16 3 C -0.15 -1.32 7.95 71.98 0.57 -0.74 16 4 C -0.11 -1.41 4.64 30.59 0.14 -1.26 16 5 C 0.07 0.68 6.34 71.98 0.46 1.14 16 6 O -0.60 -7.55 13.66 -148.98 -2.03 -9.58 16 7 C 0.13 2.43 4.56 86.38 0.39 2.83 16 8 N -0.70 -14.22 4.91 -465.94 -2.29 -16.50 16 9 C 0.56 17.85 7.77 86.79 0.67 18.52 16 10 O -0.58 -24.57 16.34 -3.88 -0.06 -24.63 16 11 C -0.16 -5.10 5.87 -20.11 -0.12 -5.22 16 12 C -0.06 -1.39 9.54 22.57 0.22 -1.18 16 13 C -0.12 -2.79 10.02 22.21 0.22 -2.57 16 14 C -0.06 -2.15 9.79 22.48 0.22 -1.93 16 15 C -0.13 -5.75 5.45 22.65 0.12 -5.63 16 16 S -0.10 -5.31 21.40 -56.49 -1.21 -6.52 16 17 C -0.53 -31.73 9.46 67.94 0.64 -31.08 16 18 H 0.07 3.95 7.79 -2.91 -0.02 3.92 16 19 C 0.02 1.04 5.49 84.84 0.47 1.50 16 20 N -0.91 -55.14 13.22 21.64 0.29 -54.85 16 21 Si 0.99 45.13 29.55 68.60 2.03 47.16 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 C -0.05 -2.00 9.34 22.70 0.21 -1.79 16 26 H 0.07 0.45 6.86 -2.39 -0.02 0.43 16 27 H 0.08 0.38 6.43 -2.39 -0.02 0.37 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.42 6.43 -2.39 -0.02 0.41 16 31 H 0.07 0.49 6.86 -2.39 -0.02 0.47 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.06 0.40 6.43 -2.39 -0.02 0.38 16 35 H 0.06 0.41 6.43 -2.39 -0.02 0.39 16 36 H 0.40 1.25 9.12 -74.06 -0.68 0.57 16 37 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.41 5.26 4.19 -92.71 -0.39 4.87 16 40 H 0.17 1.87 6.40 -2.91 -0.02 1.86 16 41 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 42 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.10 4.98 7.65 -2.91 -0.02 4.96 16 Total: -1.00 -82.63 373.01 1.45 -81.18 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -0.04 Total: 12.51 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 4.77 Total: -28.76 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -2.00 Total: -71.36 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -2.10 Total: -34.21 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.21 Total: -6.52 kcal Total: -82.63 1.45 -81.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305170133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.161 kcal (2) G-P(sol) polarization free energy of solvation -82.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds