Wall clock time and date at job start Tue Mar 31 2020 14:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46936 * 2 1 4 4 C 1.53001 * 109.47043 * 119.99384 * 2 1 3 5 5 C 1.53003 * 109.46615 * 65.90664 * 4 2 1 6 6 H 1.08999 * 109.47166 * 303.16660 * 5 4 2 7 7 C 1.53008 * 109.47004 * 183.17126 * 5 4 2 8 8 O 1.42898 * 109.46800 * 304.99837 * 7 5 4 9 9 N 1.46502 * 109.47280 * 63.17038 * 5 4 2 10 10 C 1.34775 * 119.99786 * 204.99899 * 9 5 4 11 11 O 1.21549 * 120.00440 * 359.97438 * 10 9 5 12 12 C 1.47862 * 119.99501 * 180.02562 * 10 9 5 13 13 C 1.39670 * 120.10359 * 0.02562 * 12 10 9 14 14 C 1.38047 * 120.04076 * 179.97438 * 13 12 10 15 15 C 1.38180 * 120.24117 * 359.74096 * 14 13 12 16 16 C 1.39189 * 120.20195 * 0.51712 * 15 14 13 17 17 S 1.76197 * 120.02090 * 179.76487 * 16 15 14 18 18 C 1.76197 * 99.99929 * 265.86066 * 17 16 15 19 19 H 1.07999 * 120.00060 * 5.22506 * 18 17 16 20 20 C 1.38729 * 120.00145 * 185.22551 * 18 17 16 21 21 N 1.31620 * 120.00601 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99890 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47414 * 89.99688 * 22 20 18 24 24 H 1.48497 * 109.47094 * 210.00202 * 22 20 18 25 25 H 1.48506 * 109.46730 * 329.99774 * 22 20 18 26 26 C 1.38879 * 119.95563 * 359.48753 * 16 15 14 27 27 H 1.09002 * 109.47577 * 299.99984 * 1 2 3 28 28 H 1.09001 * 109.47281 * 60.00338 * 1 2 3 29 29 H 1.09001 * 109.47286 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47305 * 239.99868 * 2 1 3 31 31 H 1.09002 * 109.46860 * 303.81036 * 3 2 1 32 32 H 1.09002 * 109.47367 * 63.80899 * 3 2 1 33 33 H 1.08998 * 109.47280 * 183.80966 * 3 2 1 34 34 H 1.08996 * 109.47500 * 305.91054 * 4 2 1 35 35 H 1.09002 * 109.47262 * 185.89922 * 4 2 1 36 36 H 1.08998 * 109.46845 * 64.99574 * 7 5 4 37 37 H 1.08997 * 109.47007 * 184.99844 * 7 5 4 38 38 H 0.96704 * 113.99782 * 180.02562 * 8 7 5 39 39 H 0.96993 * 119.99850 * 25.00376 * 9 5 4 40 40 H 1.08000 * 119.98258 * 359.95467 * 13 12 10 41 41 H 1.07989 * 119.88041 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.90056 * 180.25314 * 15 14 13 43 43 H 0.96994 * 120.00888 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.11555 * 180.28108 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6547 -2.2001 1.1774 6 1 0.5740 -2.2891 1.0663 7 6 2.0950 -2.9049 2.4621 8 8 3.4925 -2.6895 2.6685 9 7 2.3167 -2.8218 0.0278 10 6 1.7832 -3.9192 -0.5447 11 8 0.7531 -4.3933 -0.1069 12 6 2.4517 -4.5469 -1.7046 13 6 3.6362 -4.0049 -2.2083 14 6 4.2595 -4.5923 -3.2909 15 6 3.7188 -5.7206 -3.8774 16 6 2.5359 -6.2661 -3.3870 17 16 1.8472 -7.7013 -4.1424 18 6 0.7235 -6.9447 -5.2691 19 1 0.7050 -5.8699 -5.3733 20 6 -0.1375 -7.7296 -6.0222 21 7 -0.9773 -7.1645 -6.8635 22 14 -0.1060 -9.5886 -5.8413 23 1 -1.0595 -9.9989 -4.7795 24 1 -0.4973 -10.2178 -7.1282 25 1 1.2642 -10.0268 -5.4725 26 6 1.9018 -5.6818 -2.2983 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6219 1.9757 -0.8539 32 1 1.7334 1.9363 0.9222 33 1 3.1278 1.4434 -0.0683 34 1 1.5928 -0.2720 2.1361 35 1 3.1248 -0.6306 1.3037 36 1 1.5366 -2.5022 3.3071 37 1 1.9011 -3.9739 2.3747 38 1 3.8414 -3.1093 3.4668 39 1 3.1389 -2.4438 -0.3213 40 1 4.0647 -3.1254 -1.7508 41 1 5.1755 -4.1713 -3.6781 42 1 4.2132 -6.1781 -4.7216 43 1 -1.5790 -7.7132 -7.3903 44 1 0.9863 -6.1056 -1.9128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305738766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:49 Heat of formation + Delta-G solvation = -83.930352 kcal Electronic energy + Delta-G solvation = -24709.250948 eV Core-core repulsion = 21137.843981 eV Total energy + Delta-G solvation = -3571.406967 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24284 -38.46766 -37.35041 -36.32714 -34.12004 -32.49275 -31.46544 -30.62670 -29.58641 -27.38429 -26.37738 -25.67303 -23.94477 -22.46144 -21.46255 -20.49769 -20.07210 -18.42226 -17.70672 -17.30774 -16.22486 -15.87749 -15.39480 -15.25325 -15.11902 -14.94394 -14.57121 -14.31993 -14.15488 -13.87053 -13.61746 -13.41746 -12.92467 -12.75717 -12.48629 -12.46326 -12.36527 -12.14482 -11.93364 -11.73831 -11.34443 -11.18308 -11.09493 -10.90170 -10.86896 -10.81683 -10.61065 -10.26200 -9.92835 -9.76430 -9.20767 -9.10886 -9.07619 -8.62184 -8.13993 -7.12654 -6.32189 -4.07616 1.12916 1.61232 2.86485 3.05902 3.14263 3.27738 3.39119 3.51273 4.01764 4.11328 4.26943 4.35320 4.61350 4.67690 4.83616 4.91030 4.99551 5.05104 5.05684 5.07198 5.16937 5.21950 5.24638 5.40140 5.44634 5.51542 5.56284 5.63946 5.68779 5.73086 5.80715 5.83913 5.93487 5.97740 6.13455 6.15668 6.20482 6.43135 6.54459 6.59564 6.84704 7.12988 7.33510 7.53804 7.91945 8.30218 8.45440 9.11712 10.77268 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.002943 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.936850 B = 9511.699926 C = 9848.431848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 C -0.146 4.146 4 C -0.116 4.116 5 C 0.147 3.853 6 H 0.103 0.897 7 C 0.062 3.938 8 O -0.569 6.569 9 N -0.716 5.716 10 C 0.565 3.435 11 O -0.538 6.538 12 C -0.152 4.152 13 C -0.084 4.084 14 C -0.140 4.140 15 C -0.052 4.052 16 C -0.085 4.085 17 S -0.113 6.113 18 C -0.509 4.509 19 H 0.091 0.909 20 C 0.095 3.905 21 N -0.876 5.876 22 Si 0.858 3.142 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.239 1.239 26 C -0.017 4.017 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.377 0.623 39 H 0.401 0.599 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.272 0.728 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.023 13.837 17.239 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.154 4.154 5 C 0.042 3.958 6 H 0.121 0.879 7 C -0.017 4.017 8 O -0.374 6.374 9 N -0.369 5.369 10 C 0.353 3.647 11 O -0.416 6.416 12 C -0.157 4.157 13 C -0.103 4.103 14 C -0.159 4.159 15 C -0.073 4.073 16 C -0.196 4.196 17 S 0.121 5.879 18 C -0.656 4.656 19 H 0.109 0.891 20 C -0.114 4.114 21 N -0.512 5.512 22 Si 0.682 3.318 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.163 1.163 26 C -0.039 4.039 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.224 0.776 39 H 0.236 0.764 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.082 0.918 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.230 12.662 17.013 23.129 hybrid contribution -0.055 0.442 0.066 0.450 sum 9.175 13.103 17.078 23.400 Atomic orbital electron populations 1.21907 0.95117 1.02171 1.01688 1.21157 0.96180 0.96129 0.98441 1.21829 1.00856 0.95925 1.01710 1.21838 1.02339 0.92785 0.98418 1.21134 0.98480 0.92157 0.84012 0.87902 1.22673 0.82076 0.99899 0.97071 1.86448 1.23680 1.78311 1.48958 1.45849 1.28668 1.29631 1.32766 1.18387 0.83995 0.79764 0.82549 1.90762 1.23785 1.62809 1.64253 1.19839 0.97873 0.99285 0.98713 1.21187 0.94230 0.98687 0.96215 1.21047 1.00732 0.97061 0.97102 1.21897 0.94205 0.93689 0.97486 1.22183 0.97521 1.01899 0.98007 1.83059 1.51517 1.06256 1.47094 1.22244 1.22017 0.96984 1.24308 0.89100 1.24740 0.93548 0.99123 0.93957 1.69920 1.20808 1.36279 1.24217 0.86735 0.81206 0.85116 0.78715 1.19038 1.19811 1.16334 1.21886 0.97954 0.91783 0.92252 0.92776 0.92621 0.92274 0.90889 0.92654 0.92807 0.92742 0.90638 0.90427 0.92962 0.92859 0.77649 0.76365 0.86323 0.85648 0.84944 0.91814 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.97 37.16 0.33 -1.04 16 2 C -0.10 -0.85 2.86 -90.62 -0.26 -1.11 16 3 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 4 C -0.12 -0.93 3.97 -26.73 -0.11 -1.04 16 5 C 0.15 1.50 2.23 -67.92 -0.15 1.35 16 6 H 0.10 1.20 5.89 -51.93 -0.31 0.89 16 7 C 0.06 0.58 6.85 37.16 0.25 0.83 16 8 O -0.57 -4.87 12.79 -35.23 -0.45 -5.32 16 9 N -0.72 -8.42 4.26 -54.74 -0.23 -8.65 16 10 C 0.56 9.01 7.74 -12.32 -0.10 8.91 16 11 O -0.54 -10.38 16.01 5.32 0.09 -10.29 16 12 C -0.15 -2.55 5.87 -105.00 -0.62 -3.17 16 13 C -0.08 -1.16 9.54 -39.12 -0.37 -1.53 16 14 C -0.14 -1.99 10.02 -39.67 -0.40 -2.38 16 15 C -0.05 -0.91 9.79 -39.25 -0.38 -1.30 16 16 C -0.09 -1.79 5.45 -38.99 -0.21 -2.01 16 17 S -0.11 -2.76 19.38 -107.50 -2.08 -4.85 16 18 C -0.51 -14.68 10.01 30.91 0.31 -14.37 16 19 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 20 C 0.10 2.76 5.50 -17.46 -0.10 2.66 16 21 N -0.88 -26.42 13.97 55.49 0.77 -25.64 16 22 Si 0.86 21.13 27.74 -169.99 -4.71 16.41 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 26 C -0.02 -0.35 9.34 -38.92 -0.36 -0.71 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.63 6.53 -51.93 -0.34 0.29 16 30 H 0.07 0.70 7.50 -51.93 -0.39 0.31 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.64 7.67 -51.93 -0.40 0.24 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.38 1.77 9.12 45.56 0.42 2.19 16 39 H 0.40 3.97 6.59 -40.82 -0.27 3.70 16 40 H 0.12 1.19 6.40 -52.49 -0.34 0.85 16 41 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.14 3.02 7.65 -52.49 -0.40 2.62 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -33.52 377.33 -8.58 -42.10 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.83 Total: 6.17 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.82 Total: -15.61 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.54 Total: -34.29 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.37 Total: -15.61 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.41 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.08 Total: -4.85 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.52 -8.58 -42.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305738766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.832 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds