Wall clock time and date at job start Tue Mar 31 2020 14:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46936 * 2 1 4 4 C 1.53001 * 109.47043 * 119.99384 * 2 1 3 5 5 C 1.53003 * 109.46615 * 65.90664 * 4 2 1 6 6 H 1.08999 * 109.47166 * 303.16660 * 5 4 2 7 7 C 1.53008 * 109.47004 * 183.17126 * 5 4 2 8 8 O 1.42898 * 109.46800 * 304.99837 * 7 5 4 9 9 N 1.46502 * 109.47280 * 63.17038 * 5 4 2 10 10 C 1.34775 * 119.99786 * 204.99899 * 9 5 4 11 11 O 1.21549 * 120.00440 * 359.97438 * 10 9 5 12 12 C 1.47862 * 119.99501 * 180.02562 * 10 9 5 13 13 C 1.39670 * 120.10359 * 0.02562 * 12 10 9 14 14 C 1.38047 * 120.04076 * 179.97438 * 13 12 10 15 15 C 1.38180 * 120.24117 * 359.74096 * 14 13 12 16 16 C 1.39189 * 120.20195 * 0.51712 * 15 14 13 17 17 S 1.76197 * 120.02090 * 179.76487 * 16 15 14 18 18 C 1.76197 * 99.99929 * 265.86066 * 17 16 15 19 19 H 1.07999 * 120.00060 * 5.22506 * 18 17 16 20 20 C 1.38729 * 120.00145 * 185.22551 * 18 17 16 21 21 N 1.31620 * 120.00601 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99890 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47414 * 89.99688 * 22 20 18 24 24 H 1.48497 * 109.47094 * 210.00202 * 22 20 18 25 25 H 1.48506 * 109.46730 * 329.99774 * 22 20 18 26 26 C 1.38879 * 119.95563 * 359.48753 * 16 15 14 27 27 H 1.09002 * 109.47577 * 299.99984 * 1 2 3 28 28 H 1.09001 * 109.47281 * 60.00338 * 1 2 3 29 29 H 1.09001 * 109.47286 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47305 * 239.99868 * 2 1 3 31 31 H 1.09002 * 109.46860 * 303.81036 * 3 2 1 32 32 H 1.09002 * 109.47367 * 63.80899 * 3 2 1 33 33 H 1.08998 * 109.47280 * 183.80966 * 3 2 1 34 34 H 1.08996 * 109.47500 * 305.91054 * 4 2 1 35 35 H 1.09002 * 109.47262 * 185.89922 * 4 2 1 36 36 H 1.08998 * 109.46845 * 64.99574 * 7 5 4 37 37 H 1.08997 * 109.47007 * 184.99844 * 7 5 4 38 38 H 0.96704 * 113.99782 * 180.02562 * 8 7 5 39 39 H 0.96993 * 119.99850 * 25.00376 * 9 5 4 40 40 H 1.08000 * 119.98258 * 359.95467 * 13 12 10 41 41 H 1.07989 * 119.88041 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.90056 * 180.25314 * 15 14 13 43 43 H 0.96994 * 120.00888 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.11555 * 180.28108 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6547 -2.2001 1.1774 6 1 0.5740 -2.2891 1.0663 7 6 2.0950 -2.9049 2.4621 8 8 3.4925 -2.6895 2.6685 9 7 2.3167 -2.8218 0.0278 10 6 1.7832 -3.9192 -0.5447 11 8 0.7531 -4.3933 -0.1069 12 6 2.4517 -4.5469 -1.7046 13 6 3.6362 -4.0049 -2.2083 14 6 4.2595 -4.5923 -3.2909 15 6 3.7188 -5.7206 -3.8774 16 6 2.5359 -6.2661 -3.3870 17 16 1.8472 -7.7013 -4.1424 18 6 0.7235 -6.9447 -5.2691 19 1 0.7050 -5.8699 -5.3733 20 6 -0.1375 -7.7296 -6.0222 21 7 -0.9773 -7.1645 -6.8635 22 14 -0.1060 -9.5886 -5.8413 23 1 -1.0595 -9.9989 -4.7795 24 1 -0.4973 -10.2178 -7.1282 25 1 1.2642 -10.0268 -5.4725 26 6 1.9018 -5.6818 -2.2983 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6219 1.9757 -0.8539 32 1 1.7334 1.9363 0.9222 33 1 3.1278 1.4434 -0.0683 34 1 1.5928 -0.2720 2.1361 35 1 3.1248 -0.6306 1.3037 36 1 1.5366 -2.5022 3.3071 37 1 1.9011 -3.9739 2.3747 38 1 3.8414 -3.1093 3.4668 39 1 3.1389 -2.4438 -0.3213 40 1 4.0647 -3.1254 -1.7508 41 1 5.1755 -4.1713 -3.6781 42 1 4.2132 -6.1781 -4.7216 43 1 -1.5790 -7.7132 -7.3903 44 1 0.9863 -6.1056 -1.9128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305738766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:48 Heat of formation + Delta-G solvation = -107.576395 kcal Electronic energy + Delta-G solvation = -24710.276317 eV Core-core repulsion = 21137.843981 eV Total energy + Delta-G solvation = -3572.432336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42390 -39.59077 -38.44481 -36.99065 -35.13210 -34.72919 -32.65123 -31.98664 -30.59982 -28.04013 -27.93183 -27.05832 -25.19889 -23.80876 -22.41108 -21.64732 -20.84382 -20.09598 -19.01181 -18.44242 -17.31261 -17.16364 -17.04044 -16.63776 -16.31449 -15.92588 -15.73785 -15.41586 -15.21904 -14.99740 -14.80054 -14.70302 -14.50902 -13.94477 -13.63905 -13.44503 -13.23147 -13.14790 -13.08080 -13.00194 -12.93254 -12.69209 -12.42178 -12.29257 -11.86427 -11.59189 -11.55258 -11.52184 -11.24178 -11.19347 -10.98794 -10.83301 -10.23542 -9.91965 -9.75387 -9.15687 -8.54788 -6.29158 -0.21895 0.19464 1.05357 1.30543 1.43111 1.64234 1.77468 2.07459 2.20841 2.58894 2.83333 2.95707 3.38422 3.57293 3.72169 3.89783 3.92885 3.98206 4.02550 4.23709 4.30246 4.35232 4.42919 4.47521 4.53838 4.62345 4.71777 4.80341 4.81349 4.87882 4.89253 5.00304 5.08989 5.14598 5.18629 5.28517 5.34961 5.37808 5.42452 5.49944 5.52263 5.67791 5.81536 6.09032 6.47618 6.85942 6.87540 7.13618 8.58912 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.002943 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.936850 B = 9511.699926 C = 9848.431848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.142 4.142 4 C -0.103 4.103 5 C 0.140 3.860 6 H 0.084 0.916 7 C 0.068 3.932 8 O -0.575 6.575 9 N -0.694 5.694 10 C 0.562 3.438 11 O -0.582 6.582 12 C -0.158 4.158 13 C -0.060 4.060 14 C -0.121 4.121 15 C -0.059 4.059 16 C -0.119 4.119 17 S -0.115 6.115 18 C -0.525 4.525 19 H 0.045 0.955 20 C 0.041 3.959 21 N -0.919 5.919 22 Si 0.922 3.078 23 H -0.263 1.263 24 H -0.257 1.257 25 H -0.226 1.226 26 C -0.043 4.043 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.027 0.973 38 H 0.395 0.605 39 H 0.413 0.587 40 H 0.170 0.830 41 H 0.177 0.823 42 H 0.141 0.859 43 H 0.278 0.722 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.122 15.498 18.825 27.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 C -0.199 4.199 4 C -0.141 4.141 5 C 0.036 3.964 6 H 0.102 0.898 7 C -0.011 4.011 8 O -0.382 6.382 9 N -0.346 5.346 10 C 0.350 3.650 11 O -0.463 6.463 12 C -0.163 4.163 13 C -0.079 4.079 14 C -0.141 4.141 15 C -0.080 4.080 16 C -0.230 4.230 17 S 0.119 5.881 18 C -0.671 4.671 19 H 0.063 0.937 20 C -0.164 4.164 21 N -0.557 5.557 22 Si 0.743 3.257 23 H -0.187 1.187 24 H -0.181 1.181 25 H -0.150 1.150 26 C -0.065 4.065 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.244 0.756 39 H 0.251 0.749 40 H 0.187 0.813 41 H 0.194 0.806 42 H 0.158 0.842 43 H 0.088 0.912 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.377 14.361 18.623 26.575 hybrid contribution -0.930 0.159 -0.312 0.994 sum 11.447 14.520 18.310 26.022 Atomic orbital electron populations 1.21912 0.96008 1.00841 1.02187 1.21150 0.95410 0.97144 0.98167 1.21792 1.01356 0.94702 1.02091 1.21769 1.02833 0.90658 0.98799 1.21316 0.97542 0.93815 0.83766 0.89781 1.22500 0.83078 0.98229 0.97251 1.86387 1.22897 1.78548 1.50416 1.45707 1.28544 1.27863 1.32476 1.18360 0.83554 0.80585 0.82455 1.90743 1.25763 1.64341 1.65479 1.19985 0.99040 0.98298 0.98971 1.21726 0.92024 0.99031 0.95073 1.21557 1.01653 0.94905 0.95944 1.22088 0.93024 0.94932 0.97926 1.22071 0.99586 1.02031 0.99270 1.82598 1.50418 1.08899 1.46157 1.22374 1.23588 0.95303 1.25883 0.93671 1.25730 0.92949 1.04355 0.93364 1.70025 1.21870 1.38488 1.25315 0.85768 0.81908 0.78706 0.79350 1.18721 1.18075 1.14959 1.21640 0.97677 0.93855 0.93315 0.91373 0.93091 0.94486 0.92080 0.92968 0.91908 0.91822 0.89065 0.89535 0.90652 0.95484 0.75556 0.74874 0.81300 0.80576 0.84156 0.91238 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.97 71.98 0.65 -2.00 16 2 C -0.10 -1.48 2.86 -10.79 -0.03 -1.51 16 3 C -0.14 -1.64 9.19 71.98 0.66 -0.98 16 4 C -0.10 -1.36 3.97 30.60 0.12 -1.24 16 5 C 0.14 2.66 2.23 44.99 0.10 2.76 16 6 H 0.08 1.98 5.89 -2.39 -0.01 1.96 16 7 C 0.07 1.16 6.85 71.98 0.49 1.65 16 8 O -0.57 -8.05 12.79 -148.98 -1.91 -9.96 16 9 N -0.69 -15.14 4.26 -445.38 -1.90 -17.04 16 10 C 0.56 18.02 7.74 86.79 0.67 18.69 16 11 O -0.58 -23.65 16.01 -3.87 -0.06 -23.71 16 12 C -0.16 -5.24 5.87 -20.11 -0.12 -5.36 16 13 C -0.06 -1.43 9.54 22.57 0.22 -1.22 16 14 C -0.12 -2.96 10.02 22.21 0.22 -2.74 16 15 C -0.06 -2.01 9.79 22.48 0.22 -1.79 16 16 C -0.12 -5.13 5.45 22.65 0.12 -5.01 16 17 S -0.11 -5.79 19.38 -56.49 -1.09 -6.89 16 18 C -0.52 -31.93 10.01 67.94 0.68 -31.25 16 19 H 0.04 3.05 8.02 -2.91 -0.02 3.02 16 20 C 0.04 2.46 5.50 84.84 0.47 2.93 16 21 N -0.92 -57.63 13.97 21.64 0.30 -57.33 16 22 Si 0.92 44.51 27.74 68.60 1.90 46.41 16 23 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.23 -10.36 6.74 99.48 0.67 -9.69 16 26 C -0.04 -1.82 9.34 22.70 0.21 -1.61 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.04 0.80 6.53 -2.39 -0.02 0.78 16 30 H 0.06 1.04 7.50 -2.39 -0.02 1.03 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.06 7.67 -2.39 -0.02 1.04 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.39 2.51 9.12 -74.05 -0.68 1.84 16 39 H 0.41 6.70 6.59 -92.71 -0.61 6.09 16 40 H 0.17 2.35 6.40 -2.91 -0.02 2.33 16 41 H 0.18 2.64 8.06 -2.92 -0.02 2.62 16 42 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 43 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 44 H 0.11 5.09 7.65 -2.91 -0.02 5.07 16 Total: -1.00 -79.50 377.33 1.62 -77.88 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.31 Total: 19.29 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 4.68 Total: -28.66 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.60 Total: -74.37 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.97 Total: -33.67 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.90 Total: 46.41 kcal Atomic # 16 Polarization: -5.79 SS G_CDS: -1.09 Total: -6.89 kcal Total: -79.50 1.62 -77.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305738766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.697 kcal (2) G-P(sol) polarization free energy of solvation -79.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds