Wall clock time and date at job start Tue Mar 31 2020 14:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46758 * 2 1 4 4 C 1.53002 * 109.47023 * 119.99722 * 2 1 3 5 5 C 1.53002 * 109.47021 * 174.05975 * 4 2 1 6 6 H 1.09006 * 109.46938 * 54.80392 * 5 4 2 7 7 C 1.52998 * 109.46957 * 174.80162 * 5 4 2 8 8 O 1.42893 * 109.47001 * 55.00564 * 7 5 4 9 9 N 1.46493 * 109.47300 * 294.80941 * 5 4 2 10 10 C 1.34772 * 120.00476 * 155.00356 * 9 5 4 11 11 O 1.21551 * 119.99764 * 359.97438 * 10 9 5 12 12 C 1.47859 * 120.00232 * 179.97438 * 10 9 5 13 13 C 1.39673 * 120.10408 * 0.02562 * 12 10 9 14 14 C 1.38034 * 120.04165 * 179.97438 * 13 12 10 15 15 C 1.38187 * 120.24437 * 359.76533 * 14 13 12 16 16 C 1.39182 * 120.19926 * 0.50972 * 15 14 13 17 17 S 1.76194 * 120.01941 * 179.73786 * 16 15 14 18 18 C 1.76194 * 100.00333 * 266.15758 * 17 16 15 19 19 H 1.08004 * 120.00047 * 5.21440 * 18 17 16 20 20 C 1.38726 * 119.99939 * 185.21788 * 18 17 16 21 21 N 1.31621 * 120.00480 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 120.00073 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46524 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46985 * 119.99686 * 22 20 18 25 25 H 1.48494 * 109.47068 * 240.00422 * 22 20 18 26 26 C 1.38878 * 119.95721 * 359.47368 * 16 15 14 27 27 H 1.09004 * 109.46832 * 303.23922 * 1 2 3 28 28 H 1.09001 * 109.46991 * 63.23951 * 1 2 3 29 29 H 1.08999 * 109.46698 * 183.24124 * 1 2 3 30 30 H 1.08992 * 109.47199 * 240.00094 * 2 1 3 31 31 H 1.09001 * 109.46729 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47164 * 299.99649 * 3 2 1 33 33 H 1.09000 * 109.47479 * 60.00272 * 3 2 1 34 34 H 1.09003 * 109.46925 * 54.06107 * 4 2 1 35 35 H 1.08994 * 109.47149 * 294.06190 * 4 2 1 36 36 H 1.09000 * 109.46659 * 175.00151 * 7 5 4 37 37 H 1.08995 * 109.47245 * 295.00243 * 7 5 4 38 38 H 0.96702 * 114.00178 * 179.97438 * 8 7 5 39 39 H 0.97003 * 119.99532 * 334.99352 * 9 5 4 40 40 H 1.08000 * 119.97620 * 359.97438 * 13 12 10 41 41 H 1.08001 * 119.88077 * 180.02562 * 14 13 12 42 42 H 1.07999 * 119.89940 * 180.27972 * 15 14 13 43 43 H 0.96994 * 120.00625 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.11973 * 180.24631 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5628 -0.8518 1.1769 6 1 4.0053 0.1334 1.0293 7 6 4.0855 -1.4553 2.4820 8 8 3.4188 -2.6938 2.7346 9 7 3.9255 -1.7227 0.0562 10 6 5.1358 -1.6047 -0.5248 11 8 5.9263 -0.7752 -0.1192 12 6 5.5021 -2.4842 -1.6555 13 6 4.5952 -3.4377 -2.1237 14 6 4.9382 -4.2578 -3.1797 15 6 6.1764 -4.1366 -3.7813 16 6 7.0900 -3.1938 -3.3193 17 16 8.6699 -3.0481 -4.0854 18 6 9.6162 -4.1033 -3.0386 19 1 9.1280 -4.6694 -2.2591 20 6 10.9882 -4.2068 -3.2157 21 7 11.5832 -3.5165 -4.1653 22 14 11.9915 -5.3250 -2.1054 23 1 11.0925 -5.9848 -1.1249 24 1 12.6706 -6.3586 -2.9273 25 1 13.0087 -4.5207 -1.3819 26 6 6.7534 -2.3642 -2.2576 27 1 -0.3633 0.5633 0.8596 28 1 -0.3633 0.4627 -0.9176 29 1 -0.3633 -1.0260 0.0581 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.5925 -1.7136 1.3041 35 1 1.7661 -0.1497 2.1360 36 1 5.1579 -1.6307 2.3972 37 1 3.8939 -0.7654 3.3038 38 1 3.7014 -3.1338 3.5480 39 1 3.2945 -2.3846 -0.2676 40 1 3.6249 -3.5335 -1.6591 41 1 4.2348 -4.9939 -3.5399 42 1 6.4373 -4.7781 -4.6101 43 1 12.5425 -3.5891 -4.2894 44 1 7.4588 -1.6290 -1.8996 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305738767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:51 Heat of formation + Delta-G solvation = -85.378888 kcal Electronic energy + Delta-G solvation = -24661.001717 eV Core-core repulsion = 21089.531937 eV Total energy + Delta-G solvation = -3571.469780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.20596 -38.41235 -37.30946 -36.31830 -34.11518 -32.49992 -31.40724 -30.53698 -29.53833 -27.42902 -26.37362 -25.56335 -23.88605 -22.34875 -21.42935 -20.43475 -20.10656 -18.32743 -17.67309 -17.33854 -16.20556 -15.82333 -15.35426 -15.19965 -15.08492 -14.84603 -14.56765 -14.26437 -14.12671 -13.87060 -13.65515 -13.36459 -12.96847 -12.73031 -12.49418 -12.41238 -12.35757 -12.10064 -11.78149 -11.61305 -11.14051 -11.11299 -11.08748 -10.93925 -10.89001 -10.82324 -10.68843 -10.23363 -9.94191 -9.71453 -9.16481 -9.11348 -8.98443 -8.55597 -8.00439 -6.70059 -6.27881 -4.01562 1.19532 1.69361 3.06513 3.12434 3.20089 3.24254 3.29550 3.49281 4.05245 4.12008 4.28037 4.34847 4.59976 4.64665 4.87270 4.99466 5.05956 5.08398 5.10876 5.18734 5.24394 5.27605 5.37337 5.42768 5.48787 5.51466 5.55931 5.60770 5.70396 5.75497 5.82375 5.89846 5.93056 6.01982 6.10194 6.12508 6.28086 6.45575 6.61986 6.66696 6.95592 7.21858 7.37080 7.56518 7.58685 8.33157 8.33914 9.18083 10.78937 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.002911 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.348250 B = 9615.280203 C =10208.842558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.116 4.116 5 C 0.147 3.853 6 H 0.103 0.897 7 C 0.061 3.939 8 O -0.569 6.569 9 N -0.717 5.717 10 C 0.564 3.436 11 O -0.539 6.539 12 C -0.154 4.154 13 C -0.088 4.088 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.107 4.107 17 S -0.036 6.036 18 C -0.518 4.518 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.019 4.019 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.377 0.623 39 H 0.400 0.600 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.269 0.731 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.836 3.721 10.557 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.208 4.208 4 C -0.154 4.154 5 C 0.042 3.958 6 H 0.121 0.879 7 C -0.018 4.018 8 O -0.374 6.374 9 N -0.370 5.370 10 C 0.353 3.647 11 O -0.417 6.417 12 C -0.159 4.159 13 C -0.107 4.107 14 C -0.161 4.161 15 C -0.077 4.077 16 C -0.218 4.218 17 S 0.198 5.802 18 C -0.665 4.665 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.506 5.506 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.041 4.041 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.224 0.776 39 H 0.236 0.764 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.009 5.151 9.258 23.529 hybrid contribution 0.250 -1.842 2.195 2.876 sum -20.759 3.309 11.453 23.939 Atomic orbital electron populations 1.21832 0.95146 1.01676 1.01676 1.21158 0.95647 0.96596 0.98493 1.21907 1.01501 0.95784 1.01651 1.21836 0.93456 1.01696 0.98378 1.21126 0.95626 0.94499 0.84505 0.87922 1.22678 0.96513 0.85817 0.96791 1.86439 1.66878 1.36679 1.47421 1.45860 1.16988 1.39440 1.34692 1.18428 0.81221 0.82886 0.82174 1.90758 1.49901 1.36511 1.64530 1.19864 0.96851 1.00095 0.99088 1.21143 0.97982 0.95001 0.96603 1.21057 0.97301 1.00325 0.97435 1.21960 0.92400 0.95320 0.97971 1.22837 1.02704 0.97341 0.98886 1.83598 0.93568 1.63927 1.39091 1.22875 0.94243 1.28941 1.20486 0.90597 1.25002 0.96680 0.96099 0.95827 1.69992 1.10776 1.39326 1.30485 0.86071 0.79551 0.79764 0.79949 1.19509 1.20480 1.20441 1.21941 0.93816 0.96192 0.92127 0.92799 0.92721 0.92695 0.90895 0.92270 0.92694 0.92756 0.90463 0.90645 0.92820 0.92996 0.77592 0.76384 0.86524 0.85893 0.85111 0.92118 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 2 C -0.10 -0.80 2.86 -90.61 -0.26 -1.05 16 3 C -0.15 -1.25 8.97 37.16 0.33 -0.91 16 4 C -0.12 -0.92 3.92 -26.73 -0.10 -1.03 16 5 C 0.15 1.52 2.25 -67.93 -0.15 1.37 16 6 H 0.10 1.18 5.81 -51.93 -0.30 0.88 16 7 C 0.06 0.60 6.85 37.16 0.25 0.86 16 8 O -0.57 -5.26 12.83 -35.23 -0.45 -5.71 16 9 N -0.72 -8.55 4.34 -54.75 -0.24 -8.78 16 10 C 0.56 9.13 7.74 -12.33 -0.10 9.04 16 11 O -0.54 -10.50 16.00 5.32 0.09 -10.42 16 12 C -0.15 -2.64 5.87 -105.00 -0.62 -3.26 16 13 C -0.09 -1.25 9.54 -39.12 -0.37 -1.62 16 14 C -0.14 -2.07 10.02 -39.67 -0.40 -2.47 16 15 C -0.06 -1.01 9.79 -39.25 -0.38 -1.39 16 16 C -0.11 -2.32 5.45 -38.99 -0.21 -2.53 16 17 S -0.04 -0.94 21.40 -107.50 -2.30 -3.25 16 18 C -0.52 -14.73 9.46 30.91 0.29 -14.44 16 19 H 0.08 2.15 7.79 -52.48 -0.41 1.74 16 20 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 21 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 22 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.02 -0.39 9.34 -38.92 -0.36 -0.76 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.65 7.60 -51.93 -0.39 0.26 16 31 H 0.06 0.57 6.49 -51.93 -0.34 0.24 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.64 7.74 -51.93 -0.40 0.24 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.38 2.08 9.12 45.56 0.42 2.50 16 39 H 0.40 4.05 6.63 -40.82 -0.27 3.77 16 40 H 0.12 1.21 6.40 -52.49 -0.34 0.88 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.14 3.08 7.65 -52.49 -0.40 2.68 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -33.29 380.21 -9.10 -42.39 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.80 Total: 5.21 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.83 Total: -16.87 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.50 Total: -33.65 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.37 Total: -16.13 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.30 Total: -3.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.29 -9.10 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305738767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.989 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds