Wall clock time and date at job start Tue Mar 31 2020 14:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46758 * 2 1 4 4 C 1.53002 * 109.47023 * 119.99722 * 2 1 3 5 5 C 1.53002 * 109.47021 * 174.05975 * 4 2 1 6 6 H 1.09006 * 109.46938 * 54.80392 * 5 4 2 7 7 C 1.52998 * 109.46957 * 174.80162 * 5 4 2 8 8 O 1.42893 * 109.47001 * 55.00564 * 7 5 4 9 9 N 1.46493 * 109.47300 * 294.80941 * 5 4 2 10 10 C 1.34772 * 120.00476 * 155.00356 * 9 5 4 11 11 O 1.21551 * 119.99764 * 359.97438 * 10 9 5 12 12 C 1.47859 * 120.00232 * 179.97438 * 10 9 5 13 13 C 1.39673 * 120.10408 * 0.02562 * 12 10 9 14 14 C 1.38034 * 120.04165 * 179.97438 * 13 12 10 15 15 C 1.38187 * 120.24437 * 359.76533 * 14 13 12 16 16 C 1.39182 * 120.19926 * 0.50972 * 15 14 13 17 17 S 1.76194 * 120.01941 * 179.73786 * 16 15 14 18 18 C 1.76194 * 100.00333 * 266.15758 * 17 16 15 19 19 H 1.08004 * 120.00047 * 5.21440 * 18 17 16 20 20 C 1.38726 * 119.99939 * 185.21788 * 18 17 16 21 21 N 1.31621 * 120.00480 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 120.00073 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46524 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46985 * 119.99686 * 22 20 18 25 25 H 1.48494 * 109.47068 * 240.00422 * 22 20 18 26 26 C 1.38878 * 119.95721 * 359.47368 * 16 15 14 27 27 H 1.09004 * 109.46832 * 303.23922 * 1 2 3 28 28 H 1.09001 * 109.46991 * 63.23951 * 1 2 3 29 29 H 1.08999 * 109.46698 * 183.24124 * 1 2 3 30 30 H 1.08992 * 109.47199 * 240.00094 * 2 1 3 31 31 H 1.09001 * 109.46729 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47164 * 299.99649 * 3 2 1 33 33 H 1.09000 * 109.47479 * 60.00272 * 3 2 1 34 34 H 1.09003 * 109.46925 * 54.06107 * 4 2 1 35 35 H 1.08994 * 109.47149 * 294.06190 * 4 2 1 36 36 H 1.09000 * 109.46659 * 175.00151 * 7 5 4 37 37 H 1.08995 * 109.47245 * 295.00243 * 7 5 4 38 38 H 0.96702 * 114.00178 * 179.97438 * 8 7 5 39 39 H 0.97003 * 119.99532 * 334.99352 * 9 5 4 40 40 H 1.08000 * 119.97620 * 359.97438 * 13 12 10 41 41 H 1.08001 * 119.88077 * 180.02562 * 14 13 12 42 42 H 1.07999 * 119.89940 * 180.27972 * 15 14 13 43 43 H 0.96994 * 120.00625 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.11973 * 180.24631 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5628 -0.8518 1.1769 6 1 4.0053 0.1334 1.0293 7 6 4.0855 -1.4553 2.4820 8 8 3.4188 -2.6938 2.7346 9 7 3.9255 -1.7227 0.0562 10 6 5.1358 -1.6047 -0.5248 11 8 5.9263 -0.7752 -0.1192 12 6 5.5021 -2.4842 -1.6555 13 6 4.5952 -3.4377 -2.1237 14 6 4.9382 -4.2578 -3.1797 15 6 6.1764 -4.1366 -3.7813 16 6 7.0900 -3.1938 -3.3193 17 16 8.6699 -3.0481 -4.0854 18 6 9.6162 -4.1033 -3.0386 19 1 9.1280 -4.6694 -2.2591 20 6 10.9882 -4.2068 -3.2157 21 7 11.5832 -3.5165 -4.1653 22 14 11.9915 -5.3250 -2.1054 23 1 11.0925 -5.9848 -1.1249 24 1 12.6706 -6.3586 -2.9273 25 1 13.0087 -4.5207 -1.3819 26 6 6.7534 -2.3642 -2.2576 27 1 -0.3633 0.5633 0.8596 28 1 -0.3633 0.4627 -0.9176 29 1 -0.3633 -1.0260 0.0581 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.5925 -1.7136 1.3041 35 1 1.7661 -0.1497 2.1360 36 1 5.1579 -1.6307 2.3972 37 1 3.8939 -0.7654 3.3038 38 1 3.7014 -3.1338 3.5480 39 1 3.2945 -2.3846 -0.2676 40 1 3.6249 -3.5335 -1.6591 41 1 4.2348 -4.9939 -3.5399 42 1 6.4373 -4.7781 -4.6101 43 1 12.5425 -3.5891 -4.2894 44 1 7.4588 -1.6290 -1.8996 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305738767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:51 Heat of formation + Delta-G solvation = -108.249061 kcal Electronic energy + Delta-G solvation = -24661.993442 eV Core-core repulsion = 21089.531937 eV Total energy + Delta-G solvation = -3572.461505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40323 -39.55532 -38.43180 -36.99039 -35.12850 -34.66574 -32.61503 -31.93399 -30.57532 -28.01848 -27.75869 -27.05851 -25.16389 -23.72541 -22.38857 -21.59906 -20.84831 -20.02142 -18.99545 -18.44911 -17.30313 -17.02066 -16.94834 -16.64203 -16.31860 -15.90019 -15.72061 -15.44143 -15.23699 -15.00363 -14.68231 -14.59913 -14.49051 -13.84049 -13.43985 -13.27320 -13.18926 -13.09504 -12.99963 -12.99199 -12.93662 -12.65464 -12.40680 -12.39048 -11.74670 -11.58437 -11.53027 -11.50674 -11.26965 -11.14699 -10.89751 -10.74741 -10.21963 -9.89172 -9.69921 -8.81620 -8.40418 -6.20478 -0.18371 0.24895 1.28562 1.35326 1.45532 1.64428 1.79847 2.08415 2.23532 2.79995 2.92538 3.37472 3.40934 3.58717 3.73556 3.92477 3.94644 4.00464 4.04594 4.24517 4.35062 4.35956 4.46091 4.48519 4.54908 4.65285 4.72667 4.81756 4.83238 4.89605 4.91853 5.02872 5.10816 5.16112 5.22020 5.31497 5.36397 5.37674 5.39437 5.49805 5.51633 5.53968 5.85783 6.14890 6.48888 6.83303 6.99947 7.14892 8.67002 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.002911 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.348250 B = 9615.280203 C =10208.842558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.152 4.152 4 C -0.103 4.103 5 C 0.141 3.859 6 H 0.087 0.913 7 C 0.066 3.934 8 O -0.575 6.575 9 N -0.694 5.694 10 C 0.563 3.437 11 O -0.583 6.583 12 C -0.157 4.157 13 C -0.064 4.064 14 C -0.121 4.121 15 C -0.063 4.063 16 C -0.128 4.128 17 S -0.096 6.096 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.019 3.981 21 N -0.906 5.906 22 Si 0.993 3.007 23 H -0.266 1.266 24 H -0.265 1.265 25 H -0.272 1.272 26 C -0.045 4.045 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.023 0.977 37 H 0.076 0.924 38 H 0.394 0.606 39 H 0.413 0.587 40 H 0.169 0.831 41 H 0.175 0.825 42 H 0.135 0.865 43 H 0.274 0.726 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.453 1.856 12.271 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.209 4.209 4 C -0.141 4.141 5 C 0.037 3.963 6 H 0.105 0.895 7 C -0.013 4.013 8 O -0.383 6.383 9 N -0.346 5.346 10 C 0.351 3.649 11 O -0.464 6.464 12 C -0.162 4.162 13 C -0.082 4.082 14 C -0.140 4.140 15 C -0.084 4.084 16 C -0.240 4.240 17 S 0.139 5.861 18 C -0.682 4.682 19 H 0.084 0.916 20 C -0.186 4.186 21 N -0.543 5.543 22 Si 0.815 3.185 23 H -0.190 1.190 24 H -0.190 1.190 25 H -0.197 1.197 26 C -0.067 4.067 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.041 0.959 37 H 0.094 0.906 38 H 0.244 0.756 39 H 0.251 0.749 40 H 0.186 0.814 41 H 0.193 0.807 42 H 0.153 0.847 43 H 0.083 0.917 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.678 3.269 10.983 27.208 hybrid contribution 1.173 -1.226 1.711 2.409 sum -23.505 2.043 12.694 26.792 Atomic orbital electron populations 1.21795 0.93806 1.02319 1.02036 1.21148 0.96681 0.95942 0.98034 1.21908 1.00162 0.96553 1.02256 1.21769 0.91019 1.02290 0.99006 1.21315 0.97481 0.93506 0.84034 0.89489 1.22538 0.94696 0.86792 0.97272 1.86381 1.66662 1.36395 1.48838 1.45711 1.15393 1.39236 1.34261 1.18371 0.82113 0.82336 0.82097 1.90742 1.51540 1.38326 1.65764 1.19990 0.95959 1.01050 0.99176 1.21682 0.98884 0.92276 0.95361 1.21544 0.96071 1.00310 0.96066 1.22076 0.93377 0.94493 0.98463 1.22492 1.00732 1.00273 1.00465 1.83477 0.97741 1.64399 1.40477 1.23082 0.95165 1.29412 1.20526 0.91556 1.26014 0.97720 0.97599 0.97270 1.70110 1.11306 1.40795 1.32066 0.84991 0.77741 0.77844 0.77962 1.19047 1.18956 1.19718 1.21621 0.95370 0.96441 0.93262 0.92108 0.92741 0.91925 0.91871 0.94317 0.92756 0.91562 0.89767 0.89164 0.95855 0.90599 0.75619 0.74877 0.81357 0.80749 0.84677 0.91673 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.19 71.98 0.66 -0.80 16 2 C -0.10 -1.32 2.86 -10.79 -0.03 -1.35 16 3 C -0.15 -2.31 8.97 71.98 0.65 -1.66 16 4 C -0.10 -1.32 3.92 30.60 0.12 -1.20 16 5 C 0.14 2.68 2.25 44.99 0.10 2.79 16 6 H 0.09 1.99 5.81 -2.38 -0.01 1.98 16 7 C 0.07 1.20 6.85 71.98 0.49 1.69 16 8 O -0.58 -8.90 12.83 -148.98 -1.91 -10.81 16 9 N -0.69 -15.19 4.34 -445.41 -1.93 -17.12 16 10 C 0.56 18.15 7.74 86.79 0.67 18.83 16 11 O -0.58 -23.83 16.00 -3.88 -0.06 -23.89 16 12 C -0.16 -5.28 5.87 -20.11 -0.12 -5.40 16 13 C -0.06 -1.54 9.54 22.57 0.22 -1.33 16 14 C -0.12 -3.03 10.02 22.21 0.22 -2.81 16 15 C -0.06 -2.24 9.79 22.48 0.22 -2.02 16 16 C -0.13 -5.79 5.45 22.65 0.12 -5.67 16 17 S -0.10 -5.31 21.40 -56.49 -1.21 -6.52 16 18 C -0.53 -31.82 9.46 67.94 0.64 -31.18 16 19 H 0.07 3.92 7.79 -2.91 -0.02 3.90 16 20 C 0.02 1.11 5.49 84.84 0.47 1.58 16 21 N -0.91 -55.21 13.22 21.63 0.29 -54.93 16 22 Si 0.99 45.12 29.55 68.60 2.03 47.14 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 C -0.05 -1.96 9.34 22.70 0.21 -1.75 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.97 7.60 -2.39 -0.02 0.95 16 31 H 0.04 0.74 6.49 -2.39 -0.02 0.73 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.03 7.74 -2.39 -0.02 1.01 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.02 0.56 8.14 -2.39 -0.02 0.55 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.39 3.22 9.12 -74.06 -0.68 2.54 16 39 H 0.41 6.72 6.63 -92.71 -0.61 6.10 16 40 H 0.17 2.39 6.40 -2.91 -0.02 2.37 16 41 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 42 H 0.14 4.60 8.06 -2.91 -0.02 4.57 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.10 5.07 7.65 -2.91 -0.02 5.04 16 Total: -1.00 -78.69 380.21 1.57 -77.12 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -0.27 Total: 19.30 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 4.65 Total: -30.30 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.65 Total: -72.04 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.97 Total: -34.70 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.21 Total: -6.52 kcal Total: -78.69 1.57 -77.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305738767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.131 kcal (2) G-P(sol) polarization free energy of solvation -78.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds