Wall clock time and date at job start Tue Mar 31 2020 14:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47522 * 2 1 4 4 C 1.53001 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46899 * 300.00316 * 3 2 1 6 6 C 1.53002 * 109.47186 * 299.99342 * 5 3 2 7 7 O 1.42898 * 109.47027 * 180.02562 * 6 5 3 8 8 N 1.46493 * 109.47034 * 60.00049 * 3 2 1 9 9 C 1.34783 * 120.00266 * 59.99966 * 8 3 2 10 10 O 1.21554 * 119.99505 * 0.02562 * 9 8 3 11 11 C 1.47857 * 120.00551 * 180.02562 * 9 8 3 12 12 C 1.39683 * 120.10031 * 0.02562 * 11 9 8 13 13 C 1.38039 * 120.04013 * 179.97438 * 12 11 9 14 14 C 1.38176 * 120.24026 * 359.67736 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.59964 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76206 * 100.00127 * 265.25129 * 16 15 14 18 18 H 1.07994 * 120.00039 * 5.12620 * 17 16 15 19 19 C 1.38732 * 119.99565 * 185.12088 * 17 16 15 20 20 N 1.31616 * 120.00319 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99299 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47166 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46857 * 120.00087 * 21 19 17 24 24 H 1.48498 * 109.46876 * 239.99880 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09000 * 109.47012 * 300.00244 * 1 2 3 27 27 H 1.08998 * 109.47183 * 59.99744 * 1 2 3 28 28 H 1.08990 * 109.47377 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47256 * 240.00423 * 2 1 3 30 30 H 1.08998 * 109.47183 * 120.00256 * 2 1 3 31 31 H 1.08998 * 109.47202 * 300.00085 * 4 3 2 32 32 H 1.08996 * 109.46977 * 60.00458 * 4 3 2 33 33 H 1.08996 * 109.46715 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47101 * 59.99765 * 5 3 2 35 35 H 1.09004 * 109.46705 * 179.97438 * 5 3 2 36 36 H 1.08995 * 109.47232 * 300.00879 * 6 5 3 37 37 H 1.09006 * 109.46695 * 60.00118 * 6 5 3 38 38 H 0.96694 * 113.99546 * 180.02562 * 7 6 5 39 39 H 0.97000 * 120.00523 * 240.00669 * 8 3 2 40 40 H 1.08002 * 119.97685 * 359.97438 * 12 11 9 41 41 H 1.07999 * 119.87763 * 179.97438 * 13 12 11 42 42 H 1.08006 * 119.89818 * 180.31426 * 14 13 12 43 43 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.12344 * 180.29777 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 1.5300 2.1638 -1.2492 6 6 2.0400 1.4426 -2.4985 7 8 1.5641 2.1166 -3.6653 8 7 1.5518 2.1331 1.1961 9 6 1.8774 1.6726 2.4203 10 8 2.5765 0.6845 2.5318 11 6 1.3841 2.3692 3.6276 12 6 0.5801 3.5045 3.5020 13 6 0.1199 4.1536 4.6299 14 6 0.4459 3.6808 5.8867 15 6 1.2511 2.5539 6.0237 16 16 1.6704 1.9598 7.6286 17 6 3.2263 2.7560 7.8527 18 1 3.5845 3.4587 7.1151 19 6 3.9911 2.4800 8.9768 20 7 3.5543 1.6240 9.8761 21 14 5.6402 3.3246 9.2147 22 1 5.8998 4.2349 8.0705 23 1 5.6177 4.1081 10.4760 24 1 6.7144 2.3018 9.2864 25 6 1.7191 1.8946 4.8946 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.9338 0.9284 0.8891 32 1 3.9330 0.9288 -0.8909 33 1 3.9334 2.4700 -0.0002 34 1 0.4400 2.1638 -1.2492 35 1 1.8931 3.1916 -1.2490 36 1 3.1300 1.4425 -2.4985 37 1 1.6767 0.4149 -2.4985 38 1 1.8492 1.7129 -4.4964 39 1 0.9941 2.9217 1.1072 40 1 0.3184 3.8747 2.5217 41 1 -0.5012 5.0314 4.5298 42 1 0.0786 4.1901 6.7655 43 1 4.0892 1.4308 10.6619 44 1 2.3401 1.0171 4.9977 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305818026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:05 Heat of formation + Delta-G solvation = -97.991285 kcal Electronic energy + Delta-G solvation = -24835.450235 eV Core-core repulsion = 21263.433540 eV Total energy + Delta-G solvation = -3572.016695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66852 -39.75084 -38.48844 -37.00600 -34.66580 -34.09481 -32.03127 -31.88179 -31.53295 -29.42680 -27.75801 -25.85790 -24.43869 -24.24035 -23.56900 -21.55664 -20.19679 -19.99031 -19.11544 -18.35086 -17.15422 -16.94853 -16.81635 -16.65108 -16.49098 -16.26878 -15.68532 -15.39648 -15.06300 -14.85496 -14.65577 -14.55863 -14.34077 -14.03636 -13.80685 -13.28840 -13.25579 -13.04971 -12.99268 -12.89711 -12.65938 -12.62061 -12.45359 -12.33202 -12.09124 -11.83532 -11.72172 -11.57803 -11.25251 -10.86241 -10.74000 -10.62165 -10.18632 -9.88860 -9.69376 -8.81446 -8.40446 -6.20368 -0.16346 0.26158 1.28652 1.35248 1.45558 1.64919 1.84072 2.03525 2.23567 2.82004 2.92544 3.29434 3.40959 3.60209 3.80759 3.89099 3.94575 4.02398 4.05423 4.21936 4.35698 4.39463 4.41040 4.48781 4.56745 4.59980 4.67897 4.72531 4.81007 4.87952 4.92874 4.96193 5.07699 5.16342 5.20806 5.24570 5.32838 5.36415 5.37732 5.45807 5.51010 5.56267 5.87039 6.14871 6.55109 6.92067 6.99978 7.21461 8.66880 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.002796 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.092692 B =10012.531032 C =10505.083975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.184 3.816 4 C -0.168 4.168 5 C -0.117 4.117 6 C 0.076 3.924 7 O -0.593 6.593 8 N -0.702 5.702 9 C 0.567 3.433 10 O -0.567 6.567 11 C -0.157 4.157 12 C -0.065 4.065 13 C -0.121 4.121 14 C -0.065 4.065 15 C -0.129 4.129 16 S -0.097 6.097 17 C -0.534 4.534 18 H 0.066 0.934 19 C 0.019 3.981 20 N -0.906 5.906 21 Si 0.993 3.007 22 H -0.266 1.266 23 H -0.265 1.265 24 H -0.272 1.272 25 C -0.045 4.045 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.399 0.601 39 H 0.413 0.587 40 H 0.172 0.828 41 H 0.174 0.826 42 H 0.134 0.866 43 H 0.274 0.726 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 4.156 -27.145 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.099 3.901 4 C -0.226 4.226 5 C -0.155 4.155 6 C -0.001 4.001 7 O -0.402 6.402 8 N -0.355 5.355 9 C 0.355 3.645 10 O -0.447 6.447 11 C -0.162 4.162 12 C -0.084 4.084 13 C -0.141 4.141 14 C -0.086 4.086 15 C -0.240 4.240 16 S 0.138 5.862 17 C -0.681 4.681 18 H 0.084 0.916 19 C -0.186 4.186 20 N -0.543 5.543 21 Si 0.814 3.186 22 H -0.190 1.190 23 H -0.190 1.190 24 H -0.197 1.197 25 C -0.066 4.066 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.249 0.751 39 H 0.251 0.749 40 H 0.189 0.811 41 H 0.192 0.808 42 H 0.152 0.848 43 H 0.083 0.917 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.032 3.020 -25.715 26.830 hybrid contribution 1.811 0.596 -0.236 1.921 sum -5.221 3.616 -25.951 26.717 Atomic orbital electron populations 1.21752 0.94804 1.01857 1.02006 1.22011 0.97060 0.95800 1.02992 1.20258 0.93781 0.92299 0.83803 1.22303 0.94791 1.02487 1.03052 1.21653 1.02632 1.00035 0.91132 1.22230 0.98145 0.95268 0.84495 1.86388 1.78108 1.58349 1.17312 1.45812 1.53514 1.32148 1.04012 1.18235 0.79299 0.83211 0.83762 1.90709 1.39169 1.27612 1.87196 1.20047 1.04128 0.99740 0.92281 1.21714 0.93697 0.92169 1.00795 1.21541 1.00743 1.01239 0.90538 1.22061 0.94137 0.92805 0.99578 1.22489 1.02608 1.00215 0.98681 1.83485 1.25825 1.65486 1.11436 1.23074 1.05296 1.29139 1.10575 0.91562 1.26014 1.02473 0.95695 0.94453 1.70114 1.39611 1.33661 1.10878 0.84993 0.76711 0.78190 0.78664 1.19044 1.18983 1.19734 1.21608 0.95707 0.97733 0.91596 0.93904 0.90721 0.92775 0.89376 0.92885 0.93430 0.89643 0.92163 0.89487 0.90200 0.92406 0.92146 0.75111 0.74895 0.81087 0.80838 0.84828 0.91693 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.40 71.98 0.68 -1.82 16 2 C -0.14 -2.72 4.42 30.59 0.14 -2.59 16 3 C 0.18 3.25 0.53 3.61 0.00 3.25 16 4 C -0.17 -3.39 8.05 71.98 0.58 -2.81 16 5 C -0.12 -1.45 4.40 30.60 0.13 -1.31 16 6 C 0.08 0.80 6.34 71.98 0.46 1.26 16 7 O -0.59 -6.78 13.66 -148.98 -2.04 -8.81 16 8 N -0.70 -14.07 4.29 -425.74 -1.83 -15.90 16 9 C 0.57 17.27 7.19 86.79 0.62 17.90 16 10 O -0.57 -21.88 12.55 -3.89 -0.05 -21.93 16 11 C -0.16 -5.09 5.87 -20.11 -0.12 -5.21 16 12 C -0.07 -1.51 9.54 22.57 0.22 -1.29 16 13 C -0.12 -2.97 10.02 22.21 0.22 -2.75 16 14 C -0.06 -2.28 9.79 22.48 0.22 -2.06 16 15 C -0.13 -5.74 5.45 22.65 0.12 -5.62 16 16 S -0.10 -5.37 21.41 -56.49 -1.21 -6.58 16 17 C -0.53 -31.67 9.46 67.94 0.64 -31.02 16 18 H 0.07 3.91 7.79 -2.91 -0.02 3.88 16 19 C 0.02 1.09 5.49 84.84 0.47 1.56 16 20 N -0.91 -55.14 13.22 21.64 0.29 -54.85 16 21 Si 0.99 45.09 29.55 68.60 2.03 47.11 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 C -0.04 -1.90 9.34 22.70 0.21 -1.69 16 26 H 0.04 0.84 7.60 -2.39 -0.02 0.82 16 27 H 0.07 0.96 6.43 -2.39 -0.02 0.94 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 1.32 6.43 -2.38 -0.02 1.30 16 30 H 0.05 1.47 6.16 -2.39 -0.01 1.45 16 31 H 0.05 1.34 6.17 -2.39 -0.01 1.33 16 32 H 0.08 1.29 6.43 -2.39 -0.02 1.28 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.00 6.43 -2.39 -0.02 0.98 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 0.54 6.43 -2.39 -0.02 0.52 16 37 H 0.06 0.54 6.43 -2.38 -0.02 0.53 16 38 H 0.40 1.10 9.12 -74.06 -0.68 0.42 16 39 H 0.41 5.54 6.50 -92.71 -0.60 4.93 16 40 H 0.17 2.11 6.40 -2.91 -0.02 2.09 16 41 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.10 4.98 7.65 -2.91 -0.02 4.96 16 Total: -1.00 -79.56 366.12 1.55 -78.01 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -0.24 Total: 17.16 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 4.59 Total: -34.21 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.54 Total: -70.75 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -2.08 Total: -30.74 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -1.21 Total: -6.58 kcal Total: -79.56 1.55 -78.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305818026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.982 kcal (2) G-P(sol) polarization free energy of solvation -79.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds