Wall clock time and date at job start Tue Mar 31 2020 14:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47244 * 2 1 4 4 C 1.52996 * 109.46944 * 184.99928 * 3 2 1 5 5 C 1.53002 * 109.46945 * 65.00272 * 3 2 1 6 6 C 1.52999 * 109.47149 * 59.99823 * 5 3 2 7 7 O 1.42902 * 109.46769 * 179.97438 * 6 5 3 8 8 N 1.46503 * 109.47008 * 305.00226 * 3 2 1 9 9 C 1.34771 * 119.99711 * 299.99987 * 8 3 2 10 10 O 1.21551 * 120.00435 * 0.02562 * 9 8 3 11 11 C 1.47866 * 119.99921 * 180.02562 * 9 8 3 12 12 C 1.39680 * 120.09853 * 359.71885 * 11 9 8 13 13 C 1.38037 * 120.03679 * 179.79141 * 12 11 9 14 14 C 1.38177 * 120.24582 * 0.46695 * 13 12 11 15 15 C 1.39186 * 120.20183 * 359.78737 * 14 13 12 16 16 S 1.76194 * 120.02009 * 179.97438 * 15 14 13 17 17 C 1.76202 * 100.00260 * 265.52947 * 16 15 14 18 18 H 1.08004 * 119.99523 * 5.12013 * 17 16 15 19 19 C 1.38722 * 119.99942 * 185.11915 * 17 16 15 20 20 N 1.31618 * 120.00392 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99759 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47437 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47049 * 120.00183 * 21 19 17 24 24 H 1.48503 * 109.47487 * 240.00132 * 21 19 17 25 25 C 1.38878 * 119.95560 * 359.97438 * 15 14 13 26 26 H 1.09008 * 109.46818 * 300.00130 * 1 2 3 27 27 H 1.09002 * 109.47059 * 59.99209 * 1 2 3 28 28 H 1.08995 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47108 * 240.00508 * 2 1 3 30 30 H 1.08999 * 109.47183 * 119.99847 * 2 1 3 31 31 H 1.09008 * 109.46975 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47356 * 300.00044 * 4 3 2 33 33 H 1.09004 * 109.47002 * 60.00704 * 4 3 2 34 34 H 1.09000 * 109.46837 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47176 * 299.99900 * 5 3 2 36 36 H 1.08995 * 109.47351 * 299.99798 * 6 5 3 37 37 H 1.09001 * 109.47020 * 59.99981 * 6 5 3 38 38 H 0.96703 * 113.99466 * 180.02562 * 7 6 5 39 39 H 0.96999 * 120.00043 * 120.27893 * 8 3 2 40 40 H 1.08004 * 119.98122 * 0.02562 * 12 11 9 41 41 H 1.08008 * 119.87706 * 180.21436 * 13 12 11 42 42 H 1.08002 * 119.89748 * 179.76695 * 14 13 12 43 43 H 0.96998 * 120.00311 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.11887 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5648 1.4443 -0.1257 5 6 1.6353 2.1266 1.3074 6 6 2.2454 1.3699 2.4890 7 8 1.8678 2.0091 3.7100 8 7 1.4559 2.1670 -1.1314 9 6 1.6792 1.7427 -2.3909 10 8 2.3649 0.7586 -2.5882 11 6 1.0900 2.4742 -3.5329 12 6 0.2969 3.6019 -3.3084 13 6 -0.2489 4.2864 -4.3757 14 6 -0.0220 3.8549 -5.6686 15 6 0.7624 2.7294 -5.9037 16 16 1.0480 2.1832 -7.5543 17 6 -0.2359 0.9861 -7.7070 18 1 -0.9541 0.8600 -6.9103 19 6 -0.3242 0.2057 -8.8505 20 7 0.5514 0.3591 -9.8212 21 14 -1.6849 -1.0638 -9.0120 22 1 -2.5318 -1.0398 -7.7924 23 1 -2.5187 -0.7474 -10.1994 24 1 -1.0864 -2.4133 -9.1730 25 6 1.3197 2.0374 -4.8364 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9282 2.4720 -0.1262 32 1 3.9994 0.9053 0.7160 33 1 3.8532 0.9570 -1.0572 34 1 1.9983 3.1543 1.3072 35 1 0.5490 2.1253 1.3970 36 1 1.8820 0.3423 2.4890 37 1 3.3317 1.3711 2.3994 38 1 2.2204 1.5821 4.5028 39 1 0.9117 2.9545 -0.9742 40 1 0.1137 3.9406 -2.2994 41 1 -0.8589 5.1600 -4.1992 42 1 -0.4549 4.3926 -6.4993 43 1 0.4899 -0.1869 -10.6206 44 1 1.9291 1.1640 -5.0158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305818027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:09 Heat of formation + Delta-G solvation = -74.229963 kcal Electronic energy + Delta-G solvation = -24874.358124 eV Core-core repulsion = 21303.371797 eV Total energy + Delta-G solvation = -3570.986326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58669 -38.61107 -37.50696 -36.24074 -32.97740 -32.50894 -31.07538 -30.66917 -30.38115 -28.64132 -25.57314 -24.91059 -23.55893 -23.24487 -22.23384 -20.39137 -19.26942 -18.48261 -17.88654 -17.25721 -16.05340 -15.87680 -15.68647 -15.26790 -15.16586 -14.85321 -14.43309 -14.17174 -14.09526 -13.80491 -13.56144 -13.38660 -13.12091 -12.96906 -12.48294 -12.26753 -12.16035 -11.88200 -11.74017 -11.63343 -11.30082 -11.16580 -11.11803 -11.09482 -10.98132 -10.80183 -10.70204 -10.20659 -9.92986 -9.53569 -9.16845 -9.12617 -8.99942 -8.57922 -8.02511 -6.71251 -6.28782 -4.02588 1.17414 1.67187 2.98739 3.06117 3.19429 3.23035 3.28800 3.47341 3.84753 4.09052 4.26406 4.50611 4.53694 4.63613 4.89975 4.91423 4.97423 5.07176 5.08087 5.10282 5.22625 5.24706 5.38686 5.47600 5.50118 5.53946 5.59621 5.63789 5.74532 5.82705 5.88044 5.92260 5.99317 6.09125 6.20696 6.24189 6.28918 6.50191 6.59826 6.64424 6.93711 7.19676 7.20403 7.54474 7.57744 8.32914 8.33297 9.17238 10.78021 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.002866 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.506003 B = 9769.042071 C =10366.887151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C 0.183 3.817 4 C -0.169 4.169 5 C -0.124 4.124 6 C 0.076 3.924 7 O -0.576 6.576 8 N -0.723 5.723 9 C 0.568 3.432 10 O -0.529 6.529 11 C -0.155 4.155 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.056 4.056 15 C -0.107 4.107 16 S -0.036 6.036 17 C -0.518 4.518 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.870 5.870 21 Si 0.921 3.079 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.019 4.019 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.380 0.620 39 H 0.398 0.602 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.269 0.731 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.516 4.695 23.629 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.097 3.903 4 C -0.227 4.227 5 C -0.162 4.162 6 C -0.002 4.002 7 O -0.382 6.382 8 N -0.376 5.376 9 C 0.357 3.643 10 O -0.406 6.406 11 C -0.160 4.160 12 C -0.110 4.110 13 C -0.161 4.161 14 C -0.077 4.077 15 C -0.217 4.217 16 S 0.198 5.802 17 C -0.665 4.665 18 H 0.094 0.906 19 C -0.136 4.136 20 N -0.506 5.506 21 Si 0.747 3.253 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.040 4.040 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.227 0.773 39 H 0.233 0.767 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.569 4.618 22.060 22.684 hybrid contribution -1.752 -1.093 1.268 2.423 sum 0.818 3.525 23.328 23.607 Atomic orbital electron populations 1.21756 0.95583 1.01651 1.01742 1.22046 0.96508 0.95608 1.03668 1.20156 0.93543 0.92008 0.84553 1.22326 0.93992 1.02399 1.03976 1.21720 1.02309 1.00138 0.92007 1.22263 0.98372 0.95530 0.83988 1.86450 1.77737 1.57887 1.16093 1.45973 1.54348 1.32020 1.05268 1.18317 0.79763 0.83757 0.82436 1.90706 1.38601 1.26239 1.85080 1.19897 1.03768 0.98643 0.93685 1.21141 0.96676 0.94611 0.98536 1.21057 1.01679 1.00634 0.92723 1.21959 0.94053 0.95038 0.96635 1.22849 0.99142 0.97477 1.02254 1.83612 1.45570 1.49501 1.01482 1.22870 1.13879 1.23059 1.06720 0.90598 1.25001 0.96858 0.96883 0.94880 1.69993 1.34502 1.39224 1.06835 0.86071 0.80673 0.80264 0.78314 1.19503 1.20487 1.20432 1.21937 0.94702 0.97514 0.89870 0.92940 0.92476 0.92800 0.89248 0.91403 0.92502 0.91898 0.89781 0.90602 0.90238 0.92908 0.92995 0.77262 0.76678 0.86577 0.85909 0.85117 0.92113 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.46 37.16 0.35 -1.21 16 2 C -0.14 -1.49 4.46 -26.73 -0.12 -1.61 16 3 C 0.18 1.81 0.52 -131.82 -0.07 1.74 16 4 C -0.17 -1.74 8.05 37.16 0.30 -1.44 16 5 C -0.12 -1.00 4.51 -26.73 -0.12 -1.12 16 6 C 0.08 0.54 6.35 37.16 0.24 0.77 16 7 O -0.58 -4.33 13.66 -35.23 -0.48 -4.81 16 8 N -0.72 -8.08 4.13 -48.53 -0.20 -8.28 16 9 C 0.57 8.72 6.98 -12.32 -0.09 8.64 16 10 O -0.53 -9.68 12.60 5.32 0.07 -9.61 16 11 C -0.16 -2.56 5.87 -104.99 -0.62 -3.18 16 12 C -0.09 -1.23 9.54 -39.12 -0.37 -1.60 16 13 C -0.14 -2.02 10.02 -39.68 -0.40 -2.41 16 14 C -0.06 -1.00 9.79 -39.25 -0.38 -1.38 16 15 C -0.11 -2.27 5.45 -38.99 -0.21 -2.48 16 16 S -0.04 -0.93 21.41 -107.50 -2.30 -3.24 16 17 C -0.52 -14.62 9.46 30.91 0.29 -14.33 16 18 H 0.08 2.13 7.79 -52.48 -0.41 1.72 16 19 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 20 N -0.87 -25.48 13.22 55.49 0.73 -24.75 16 21 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 C -0.02 -0.37 9.34 -38.92 -0.36 -0.74 16 26 H 0.05 0.47 6.57 -51.92 -0.34 0.13 16 27 H 0.06 0.69 7.29 -51.93 -0.38 0.31 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.23 6.32 -51.93 -0.33 0.90 16 30 H 0.07 0.59 6.17 -51.93 -0.32 0.27 16 31 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 33 H 0.08 1.12 6.17 -51.93 -0.32 0.80 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.65 6.57 -51.93 -0.34 0.31 16 36 H 0.05 0.34 6.32 -51.93 -0.33 0.01 16 37 H 0.05 0.33 6.43 -51.93 -0.33 -0.01 16 38 H 0.38 1.15 9.12 45.56 0.42 1.57 16 39 H 0.40 3.54 6.50 -40.82 -0.27 3.28 16 40 H 0.12 1.12 6.40 -52.48 -0.34 0.78 16 41 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 42 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.14 3.02 7.65 -52.49 -0.40 2.62 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -33.24 365.74 -8.62 -41.87 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.27 Total: 5.24 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -1.66 Total: -18.41 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.53 Total: -33.03 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.41 Total: -14.42 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.30 Total: -3.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.24 -8.62 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305818027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.363 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds