Wall clock time and date at job start Tue Mar 31 2020 14:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47244 * 2 1 4 4 C 1.52996 * 109.46944 * 184.99928 * 3 2 1 5 5 C 1.53002 * 109.46945 * 65.00272 * 3 2 1 6 6 C 1.52999 * 109.47149 * 59.99823 * 5 3 2 7 7 O 1.42902 * 109.46769 * 179.97438 * 6 5 3 8 8 N 1.46503 * 109.47008 * 305.00226 * 3 2 1 9 9 C 1.34771 * 119.99711 * 299.99987 * 8 3 2 10 10 O 1.21551 * 120.00435 * 0.02562 * 9 8 3 11 11 C 1.47866 * 119.99921 * 180.02562 * 9 8 3 12 12 C 1.39680 * 120.09853 * 359.71885 * 11 9 8 13 13 C 1.38037 * 120.03679 * 179.79141 * 12 11 9 14 14 C 1.38177 * 120.24582 * 0.46695 * 13 12 11 15 15 C 1.39186 * 120.20183 * 359.78737 * 14 13 12 16 16 S 1.76194 * 120.02009 * 179.97438 * 15 14 13 17 17 C 1.76202 * 100.00260 * 265.52947 * 16 15 14 18 18 H 1.08004 * 119.99523 * 5.12013 * 17 16 15 19 19 C 1.38722 * 119.99942 * 185.11915 * 17 16 15 20 20 N 1.31618 * 120.00392 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99759 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47437 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47049 * 120.00183 * 21 19 17 24 24 H 1.48503 * 109.47487 * 240.00132 * 21 19 17 25 25 C 1.38878 * 119.95560 * 359.97438 * 15 14 13 26 26 H 1.09008 * 109.46818 * 300.00130 * 1 2 3 27 27 H 1.09002 * 109.47059 * 59.99209 * 1 2 3 28 28 H 1.08995 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47108 * 240.00508 * 2 1 3 30 30 H 1.08999 * 109.47183 * 119.99847 * 2 1 3 31 31 H 1.09008 * 109.46975 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47356 * 300.00044 * 4 3 2 33 33 H 1.09004 * 109.47002 * 60.00704 * 4 3 2 34 34 H 1.09000 * 109.46837 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47176 * 299.99900 * 5 3 2 36 36 H 1.08995 * 109.47351 * 299.99798 * 6 5 3 37 37 H 1.09001 * 109.47020 * 59.99981 * 6 5 3 38 38 H 0.96703 * 113.99466 * 180.02562 * 7 6 5 39 39 H 0.96999 * 120.00043 * 120.27893 * 8 3 2 40 40 H 1.08004 * 119.98122 * 0.02562 * 12 11 9 41 41 H 1.08008 * 119.87706 * 180.21436 * 13 12 11 42 42 H 1.08002 * 119.89748 * 179.76695 * 14 13 12 43 43 H 0.96998 * 120.00311 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.11887 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5648 1.4443 -0.1257 5 6 1.6353 2.1266 1.3074 6 6 2.2454 1.3699 2.4890 7 8 1.8678 2.0091 3.7100 8 7 1.4559 2.1670 -1.1314 9 6 1.6792 1.7427 -2.3909 10 8 2.3649 0.7586 -2.5882 11 6 1.0900 2.4742 -3.5329 12 6 0.2969 3.6019 -3.3084 13 6 -0.2489 4.2864 -4.3757 14 6 -0.0220 3.8549 -5.6686 15 6 0.7624 2.7294 -5.9037 16 16 1.0480 2.1832 -7.5543 17 6 -0.2359 0.9861 -7.7070 18 1 -0.9541 0.8600 -6.9103 19 6 -0.3242 0.2057 -8.8505 20 7 0.5514 0.3591 -9.8212 21 14 -1.6849 -1.0638 -9.0120 22 1 -2.5318 -1.0398 -7.7924 23 1 -2.5187 -0.7474 -10.1994 24 1 -1.0864 -2.4133 -9.1730 25 6 1.3197 2.0374 -4.8364 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9282 2.4720 -0.1262 32 1 3.9994 0.9053 0.7160 33 1 3.8532 0.9570 -1.0572 34 1 1.9983 3.1543 1.3072 35 1 0.5490 2.1253 1.3970 36 1 1.8820 0.3423 2.4890 37 1 3.3317 1.3711 2.3994 38 1 2.2204 1.5821 4.5028 39 1 0.9117 2.9545 -0.9742 40 1 0.1137 3.9406 -2.2994 41 1 -0.8589 5.1600 -4.1992 42 1 -0.4549 4.3926 -6.4993 43 1 0.4899 -0.1869 -10.6206 44 1 1.9291 1.1640 -5.0158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305818027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:08 Heat of formation + Delta-G solvation = -97.694046 kcal Electronic energy + Delta-G solvation = -24875.375603 eV Core-core repulsion = 21303.371797 eV Total energy + Delta-G solvation = -3572.003805 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66980 -39.74502 -38.47691 -37.00736 -34.66645 -34.07175 -32.02815 -31.89997 -31.56564 -29.40432 -27.75858 -25.85406 -24.45037 -24.23768 -23.56966 -21.55401 -20.21146 -19.98906 -19.11093 -18.34944 -17.15427 -16.94900 -16.79317 -16.64391 -16.48689 -16.28886 -15.68238 -15.40949 -15.03356 -14.86416 -14.67321 -14.60278 -14.33518 -14.01660 -13.77218 -13.34578 -13.17039 -13.07794 -12.99416 -12.91977 -12.64936 -12.62531 -12.45221 -12.35067 -12.10557 -11.81779 -11.73850 -11.58844 -11.25294 -10.85933 -10.72376 -10.62689 -10.18528 -9.88785 -9.69533 -8.81465 -8.40447 -6.20369 -0.16195 0.26144 1.28583 1.35111 1.45430 1.64976 1.84239 2.03922 2.23521 2.82084 2.92530 3.29317 3.40968 3.60497 3.80179 3.89047 3.94562 4.02441 4.05631 4.21147 4.35759 4.38917 4.41139 4.48395 4.56547 4.59418 4.67283 4.71899 4.81534 4.87940 4.92830 4.96356 5.08249 5.14872 5.20782 5.23918 5.32789 5.36835 5.37655 5.44213 5.50968 5.56063 5.87056 6.14840 6.55462 6.92134 6.99986 7.21967 8.66906 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.002866 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.506003 B = 9769.042071 C =10366.887151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.184 3.816 4 C -0.167 4.167 5 C -0.116 4.116 6 C 0.076 3.924 7 O -0.593 6.593 8 N -0.702 5.702 9 C 0.567 3.433 10 O -0.567 6.567 11 C -0.157 4.157 12 C -0.065 4.065 13 C -0.121 4.121 14 C -0.065 4.065 15 C -0.129 4.129 16 S -0.097 6.097 17 C -0.533 4.533 18 H 0.066 0.934 19 C 0.019 3.981 20 N -0.906 5.906 21 Si 0.992 3.008 22 H -0.266 1.266 23 H -0.265 1.265 24 H -0.272 1.272 25 C -0.044 4.044 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.399 0.601 39 H 0.413 0.587 40 H 0.172 0.828 41 H 0.174 0.826 42 H 0.134 0.866 43 H 0.274 0.726 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.425 6.211 27.475 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.098 3.902 4 C -0.225 4.225 5 C -0.154 4.154 6 C -0.002 4.002 7 O -0.402 6.402 8 N -0.355 5.355 9 C 0.355 3.645 10 O -0.447 6.447 11 C -0.162 4.162 12 C -0.084 4.084 13 C -0.141 4.141 14 C -0.086 4.086 15 C -0.240 4.240 16 S 0.138 5.862 17 C -0.681 4.681 18 H 0.084 0.916 19 C -0.186 4.186 20 N -0.543 5.543 21 Si 0.814 3.186 22 H -0.190 1.190 23 H -0.190 1.190 24 H -0.197 1.197 25 C -0.066 4.066 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.249 0.751 39 H 0.251 0.749 40 H 0.189 0.811 41 H 0.192 0.808 42 H 0.152 0.848 43 H 0.083 0.917 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.626 6.164 25.951 26.680 hybrid contribution -1.101 -1.478 0.274 1.863 sum -0.475 4.686 26.225 26.645 Atomic orbital electron populations 1.21732 0.95182 1.01676 1.01813 1.22021 0.96810 0.96033 1.02931 1.20261 0.93166 0.91731 0.84999 1.22297 0.94504 1.02662 1.03064 1.21635 1.02650 1.00258 0.90842 1.22245 0.98780 0.95526 0.83624 1.86391 1.78195 1.58615 1.16976 1.45816 1.53475 1.32071 1.04119 1.18225 0.79513 0.83291 0.83460 1.90711 1.40305 1.27922 1.85739 1.20051 1.04054 0.99709 0.92386 1.21715 0.93451 0.92076 1.01136 1.21542 1.00547 1.01336 0.90644 1.22063 0.93634 0.93899 0.98987 1.22492 1.02585 0.99847 0.99070 1.83486 1.46185 1.49755 1.06809 1.23070 1.14344 1.23861 1.06776 0.91578 1.26008 0.99410 0.98904 0.94311 1.70111 1.36329 1.40363 1.07464 0.84997 0.77531 0.77357 0.78697 1.19048 1.18985 1.19730 1.21608 0.95920 0.97304 0.91805 0.90683 0.94345 0.92996 0.93028 0.89140 0.91877 0.89680 0.93339 0.89968 0.89764 0.92268 0.92221 0.75106 0.74899 0.81088 0.80842 0.84837 0.91693 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.46 71.98 0.68 -2.10 16 2 C -0.14 -2.80 4.46 30.60 0.14 -2.66 16 3 C 0.18 3.23 0.52 3.60 0.00 3.23 16 4 C -0.17 -3.23 8.05 71.98 0.58 -2.65 16 5 C -0.12 -1.42 4.51 30.59 0.14 -1.29 16 6 C 0.08 0.79 6.35 71.98 0.46 1.25 16 7 O -0.59 -6.75 13.66 -148.98 -2.04 -8.79 16 8 N -0.70 -14.03 4.13 -425.73 -1.76 -15.79 16 9 C 0.57 17.26 6.98 86.79 0.61 17.87 16 10 O -0.57 -21.87 12.60 -3.88 -0.05 -21.92 16 11 C -0.16 -5.09 5.87 -20.11 -0.12 -5.21 16 12 C -0.07 -1.51 9.54 22.57 0.22 -1.29 16 13 C -0.12 -2.98 10.02 22.21 0.22 -2.75 16 14 C -0.06 -2.28 9.79 22.48 0.22 -2.06 16 15 C -0.13 -5.74 5.45 22.65 0.12 -5.62 16 16 S -0.10 -5.37 21.41 -56.49 -1.21 -6.58 16 17 C -0.53 -31.65 9.46 67.94 0.64 -31.00 16 18 H 0.07 3.90 7.79 -2.91 -0.02 3.88 16 19 C 0.02 1.09 5.49 84.84 0.47 1.56 16 20 N -0.91 -55.15 13.22 21.63 0.29 -54.86 16 21 Si 0.99 45.10 29.55 68.60 2.03 47.13 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 C -0.04 -1.90 9.34 22.70 0.21 -1.69 16 26 H 0.07 1.08 6.57 -2.38 -0.02 1.06 16 27 H 0.04 0.86 7.29 -2.39 -0.02 0.84 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 1.46 6.32 -2.39 -0.02 1.45 16 30 H 0.09 1.37 6.17 -2.39 -0.01 1.36 16 31 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.08 1.23 6.43 -2.39 -0.02 1.21 16 33 H 0.05 1.32 6.17 -2.39 -0.01 1.30 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.99 6.57 -2.39 -0.02 0.98 16 36 H 0.06 0.54 6.32 -2.39 -0.02 0.52 16 37 H 0.06 0.53 6.43 -2.39 -0.02 0.51 16 38 H 0.40 1.08 9.12 -74.06 -0.68 0.40 16 39 H 0.41 5.52 6.50 -92.71 -0.60 4.92 16 40 H 0.17 2.11 6.40 -2.91 -0.02 2.09 16 41 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.10 4.98 7.65 -2.91 -0.02 4.96 16 Total: -1.00 -79.62 365.74 1.61 -78.01 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.24 Total: 17.22 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 4.58 Total: -34.43 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.47 Total: -70.65 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -2.08 Total: -30.70 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -1.21 Total: -6.58 kcal Total: -79.62 1.61 -78.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305818027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.681 kcal (2) G-P(sol) polarization free energy of solvation -79.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds