Wall clock time and date at job start Tue Mar 31 2020 14:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46979 * 120.00025 * 8 6 4 11 11 H 1.48498 * 109.46942 * 239.99938 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 N 1.46499 * 109.46840 * 299.99500 * 12 2 1 14 14 S 1.65599 * 120.00012 * 165.00017 * 13 12 2 15 15 O 1.42097 * 106.40866 * 178.54114 * 14 13 12 16 16 O 1.42102 * 106.40573 * 311.46330 * 14 13 12 17 17 C 1.76207 * 107.21714 * 65.00092 * 14 13 12 18 18 C 1.38250 * 120.02853 * 90.00294 * 17 14 13 19 19 C 1.38106 * 119.93082 * 180.02562 * 18 17 14 20 20 C 1.38494 * 120.21816 * 359.97438 * 19 18 17 21 21 C 1.38215 * 119.84775 * 0.02562 * 20 19 18 22 22 C 1.38098 * 120.03164 * 269.72655 * 17 14 13 23 23 C 1.51375 * 109.75845 * 180.02562 * 21 20 19 24 24 C 1.54339 * 105.17071 * 342.81426 * 23 21 20 25 25 C 1.51367 * 130.39345 * 180.02562 * 20 19 18 26 26 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 27 27 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 28 28 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 31 31 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 32 32 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 34 34 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 35 35 H 0.97001 * 120.00191 * 345.00817 * 13 12 2 36 36 H 1.07996 * 120.03849 * 0.02562 * 18 17 14 37 37 H 1.08000 * 119.89255 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.89788 * 359.97438 * 22 17 14 39 39 H 1.08999 * 110.30662 * 223.88285 * 23 21 20 40 40 H 1.09003 * 110.37934 * 101.77950 * 23 21 20 41 41 H 1.09000 * 110.82026 * 268.11663 * 24 23 21 42 42 H 1.08998 * 110.99224 * 144.64924 * 24 23 21 43 43 H 1.09004 * 110.30079 * 316.08762 * 25 20 19 44 44 H 1.08994 * 110.30771 * 78.24217 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1471 -2.2864 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1858 -4.8161 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 16 1.6258 -0.7782 3.9212 15 8 1.1157 0.1508 4.8677 16 8 1.0840 -2.0793 3.7397 17 6 3.3303 -0.9988 4.3093 18 6 4.0148 -0.0174 5.0019 19 6 5.3509 -0.1922 5.3045 20 6 6.0080 -1.3481 4.9169 21 6 5.3237 -2.3291 4.2245 22 6 3.9823 -2.1546 3.9269 23 6 6.2542 -3.4832 3.9185 24 6 7.6770 -2.9167 4.1105 25 6 7.4454 -1.7754 5.1231 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 0.7080 1.1609 -3.4844 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2494 35 1 1.1851 0.8644 2.3729 36 1 3.5053 0.8849 5.3060 37 1 5.8852 0.5750 5.8453 38 1 3.4457 -2.9229 3.3901 39 1 6.1159 -3.8183 2.8906 40 1 6.0783 -4.3065 4.6109 41 1 8.0688 -2.5270 3.1710 42 1 8.3455 -3.6720 4.5236 43 1 8.1202 -0.9444 4.9175 44 1 7.5900 -2.1381 6.1407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315996747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:17 Heat of formation + Delta-G solvation = -63.290236 kcal Electronic energy + Delta-G solvation = -25727.140695 eV Core-core repulsion = 22156.628751 eV Total energy + Delta-G solvation = -3570.511944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.24653 -37.08445 -36.74488 -35.92801 -35.54501 -33.20422 -31.70338 -30.52626 -29.38186 -27.60406 -25.67956 -25.52606 -24.50430 -23.16749 -21.70452 -21.07607 -19.13310 -18.80291 -17.55233 -17.11694 -16.22538 -15.86555 -15.73647 -15.48234 -15.16313 -14.69156 -14.16783 -13.97529 -13.50181 -13.42519 -13.15186 -13.13338 -12.91603 -12.49443 -12.22635 -11.92593 -11.85507 -11.76838 -11.69490 -11.48004 -11.46112 -11.25095 -11.12632 -11.09606 -10.94219 -10.67602 -10.63079 -10.38539 -10.16684 -9.64405 -9.32936 -9.16171 -8.87001 -8.78952 -8.74544 -8.36723 -6.00884 -4.11532 0.60542 0.86737 1.21784 3.21298 3.26563 3.35426 3.38482 3.53671 4.03771 4.11497 4.24908 4.39129 4.61360 4.72257 4.79112 4.90590 5.08550 5.15583 5.25757 5.35085 5.39842 5.50403 5.52334 5.60448 5.80414 5.82018 5.88294 5.94520 6.04860 6.07989 6.20827 6.36153 6.46740 6.51137 6.75259 6.78231 6.92809 7.02392 7.08189 7.36587 7.54211 7.60837 7.71183 8.05042 8.16568 8.40569 8.88850 9.54145 11.00287 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.004196 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.609164 B = 6670.754120 C = 8074.613980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.128 3.872 13 N -1.105 6.105 14 S 2.692 3.308 15 O -0.972 6.972 16 O -0.960 6.960 17 C -0.670 4.670 18 C -0.019 4.019 19 C -0.131 4.131 20 C -0.049 4.049 21 C -0.120 4.120 22 C -0.004 4.004 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.088 4.088 26 H 0.010 0.990 27 H 0.084 0.916 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.008 0.992 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.417 0.583 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.285 -3.435 14.264 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.003 3.997 13 N -0.869 5.869 14 S 2.781 3.219 15 O -0.962 6.962 16 O -0.950 6.950 17 C -0.756 4.756 18 C -0.038 4.038 19 C -0.150 4.150 20 C -0.049 4.049 21 C -0.121 4.121 22 C -0.023 4.023 23 C -0.120 4.120 24 C -0.158 4.158 25 C -0.125 4.125 26 H 0.029 0.971 27 H 0.103 0.897 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.254 0.746 36 H 0.159 0.841 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.595 -3.773 14.651 18.470 hybrid contribution 0.953 0.077 -1.010 1.391 sum 11.548 -3.695 13.641 18.250 Atomic orbital electron populations 1.21819 0.97554 0.99359 1.00248 1.18271 0.93018 0.92616 0.89990 1.21826 0.98406 0.98460 1.00208 1.21040 1.31493 1.12068 0.89963 0.92425 1.24882 0.94882 0.94917 0.98818 1.69820 1.36580 1.22758 1.23082 0.86546 0.78636 0.79683 0.83147 1.19832 1.21056 1.21140 1.21666 0.97207 0.96048 0.84764 1.55442 1.78030 1.30646 1.22745 1.01834 0.73655 0.73710 0.72689 1.93548 1.78139 1.63720 1.60831 1.93570 1.75776 1.39905 1.85783 1.31043 1.27454 1.02853 1.14207 1.20800 0.93850 0.96879 0.92320 1.20703 0.94553 0.97390 1.02340 1.20910 0.96122 0.93607 0.94284 1.20683 0.94080 0.97178 1.00158 1.20412 0.93168 0.94873 0.93858 1.21072 0.92517 0.95657 1.02794 1.22306 0.96515 0.97478 0.99530 1.21170 0.92175 0.98824 1.00353 0.97093 0.89745 0.95334 0.95499 0.89609 0.97260 0.93069 0.91457 0.93144 0.74614 0.84140 0.85442 0.84284 0.90051 0.90020 0.90617 0.90328 0.90202 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 2 C 0.06 1.44 0.51 -155.66 -0.08 1.36 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.51 -12.93 8.01 -34.44 -0.28 -13.20 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -23.44 9.35 55.43 0.52 -22.93 16 8 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.13 2.51 5.05 -4.04 -0.02 2.49 16 13 N -1.11 -18.96 5.33 -10.61 -0.06 -19.02 16 14 S 2.69 44.32 5.74 -107.50 -0.62 43.71 16 15 O -0.97 -17.30 17.29 -57.17 -0.99 -18.29 16 16 O -0.96 -18.22 16.74 -57.17 -0.96 -19.18 16 17 C -0.67 -9.86 5.94 -39.63 -0.24 -10.10 16 18 C -0.02 -0.25 9.52 -39.63 -0.38 -0.63 16 19 C -0.13 -1.51 10.04 -39.54 -0.40 -1.91 16 20 C -0.05 -0.56 6.14 -104.21 -0.64 -1.20 16 21 C -0.12 -1.49 6.14 -104.20 -0.64 -2.13 16 22 C 0.00 -0.06 9.52 -39.54 -0.38 -0.43 16 23 C -0.08 -0.79 6.77 -26.85 -0.18 -0.97 16 24 C -0.12 -0.92 7.08 -25.33 -0.18 -1.10 16 25 C -0.09 -0.72 6.77 -26.86 -0.18 -0.90 16 26 H 0.01 0.21 7.20 -51.93 -0.37 -0.16 16 27 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 31 H 0.01 0.17 6.60 -51.93 -0.34 -0.17 16 32 H 0.26 6.63 8.31 -40.82 -0.34 6.30 16 33 H 0.07 1.34 7.75 -51.93 -0.40 0.94 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.42 6.83 6.47 -34.47 -0.22 6.61 16 36 H 0.14 1.65 7.62 -52.49 -0.40 1.25 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.14 1.90 7.61 -52.49 -0.40 1.50 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -30.53 360.89 -11.30 -41.83 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.54 Total: 5.54 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: -3.08 Total: -32.46 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.46 Total: -41.95 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.95 Total: -37.46 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 44.32 SS G_CDS: -0.62 Total: 43.71 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.53 -11.30 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315996747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.462 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds