Wall clock time and date at job start Tue Mar 31 2020 14:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46979 * 120.00025 * 8 6 4 11 11 H 1.48498 * 109.46942 * 239.99938 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 N 1.46499 * 109.46840 * 299.99500 * 12 2 1 14 14 S 1.65599 * 120.00012 * 165.00017 * 13 12 2 15 15 O 1.42097 * 106.40866 * 178.54114 * 14 13 12 16 16 O 1.42102 * 106.40573 * 311.46330 * 14 13 12 17 17 C 1.76207 * 107.21714 * 65.00092 * 14 13 12 18 18 C 1.38250 * 120.02853 * 90.00294 * 17 14 13 19 19 C 1.38106 * 119.93082 * 180.02562 * 18 17 14 20 20 C 1.38494 * 120.21816 * 359.97438 * 19 18 17 21 21 C 1.38215 * 119.84775 * 0.02562 * 20 19 18 22 22 C 1.38098 * 120.03164 * 269.72655 * 17 14 13 23 23 C 1.51375 * 109.75845 * 180.02562 * 21 20 19 24 24 C 1.54339 * 105.17071 * 342.81426 * 23 21 20 25 25 C 1.51367 * 130.39345 * 180.02562 * 20 19 18 26 26 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 27 27 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 28 28 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 31 31 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 32 32 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 34 34 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 35 35 H 0.97001 * 120.00191 * 345.00817 * 13 12 2 36 36 H 1.07996 * 120.03849 * 0.02562 * 18 17 14 37 37 H 1.08000 * 119.89255 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.89788 * 359.97438 * 22 17 14 39 39 H 1.08999 * 110.30662 * 223.88285 * 23 21 20 40 40 H 1.09003 * 110.37934 * 101.77950 * 23 21 20 41 41 H 1.09000 * 110.82026 * 268.11663 * 24 23 21 42 42 H 1.08998 * 110.99224 * 144.64924 * 24 23 21 43 43 H 1.09004 * 110.30079 * 316.08762 * 25 20 19 44 44 H 1.08994 * 110.30771 * 78.24217 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1471 -2.2864 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1858 -4.8161 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 16 1.6258 -0.7782 3.9212 15 8 1.1157 0.1508 4.8677 16 8 1.0840 -2.0793 3.7397 17 6 3.3303 -0.9988 4.3093 18 6 4.0148 -0.0174 5.0019 19 6 5.3509 -0.1922 5.3045 20 6 6.0080 -1.3481 4.9169 21 6 5.3237 -2.3291 4.2245 22 6 3.9823 -2.1546 3.9269 23 6 6.2542 -3.4832 3.9185 24 6 7.6770 -2.9167 4.1105 25 6 7.4454 -1.7754 5.1231 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 0.7080 1.1609 -3.4844 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2494 35 1 1.1851 0.8644 2.3729 36 1 3.5053 0.8849 5.3060 37 1 5.8852 0.5750 5.8453 38 1 3.4457 -2.9229 3.3901 39 1 6.1159 -3.8183 2.8906 40 1 6.0783 -4.3065 4.6109 41 1 8.0688 -2.5270 3.1710 42 1 8.3455 -3.6720 4.5236 43 1 8.1202 -0.9444 4.9175 44 1 7.5900 -2.1381 6.1407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315996747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:16 Heat of formation + Delta-G solvation = -81.153318 kcal Electronic energy + Delta-G solvation = -25727.915296 eV Core-core repulsion = 22156.628751 eV Total energy + Delta-G solvation = -3571.286546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10726 -38.68677 -38.25866 -36.99965 -36.70980 -34.93555 -32.61071 -32.33369 -30.23469 -28.37088 -27.51631 -27.38848 -26.25297 -24.06112 -22.67817 -21.78180 -20.76835 -20.28361 -18.87901 -18.36042 -17.64538 -17.30255 -16.84946 -16.54804 -16.41742 -16.08657 -15.49574 -15.23728 -14.94263 -14.87100 -14.37858 -14.05018 -13.87279 -13.77095 -13.43232 -13.39138 -13.29654 -13.21798 -13.15538 -12.92037 -12.74833 -12.61348 -12.47212 -12.26696 -12.09008 -12.07935 -12.07416 -11.88175 -11.73949 -11.45774 -11.11158 -10.65511 -10.41506 -10.23630 -10.09144 -9.73982 -7.97532 -6.13609 -0.62672 -0.21407 0.26368 1.43874 1.48204 1.56763 2.01654 2.42234 2.49457 2.76971 3.21100 3.26352 3.46063 3.58325 3.91012 4.07403 4.16035 4.23555 4.24072 4.26887 4.55664 4.56170 4.64225 4.75847 4.79652 4.81513 4.88891 4.93215 5.04805 5.07763 5.08973 5.12825 5.13398 5.22949 5.24981 5.26700 5.33720 5.45979 5.52557 5.71640 5.71993 5.84077 6.09494 6.19423 6.28816 6.47743 6.92892 7.54070 9.01582 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.004196 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.609164 B = 6670.754120 C = 8074.613980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.053 3.947 3 C -0.122 4.122 4 C -0.523 4.523 5 H 0.054 0.946 6 C 0.025 3.975 7 N -0.903 5.903 8 Si 0.945 3.055 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.283 1.283 12 C 0.141 3.859 13 N -1.105 6.105 14 S 2.709 3.291 15 O -0.986 6.986 16 O -0.991 6.991 17 C -0.680 4.680 18 C -0.033 4.033 19 C -0.132 4.132 20 C -0.049 4.049 21 C -0.133 4.133 22 C -0.027 4.027 23 C -0.088 4.088 24 C -0.116 4.116 25 C -0.086 4.086 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.018 0.982 29 H 0.026 0.974 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.258 0.742 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.421 0.579 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.818 -3.606 15.535 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.562 4.562 5 H 0.072 0.928 6 C -0.175 4.175 7 N -0.542 5.542 8 Si 0.772 3.228 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.209 1.209 12 C 0.015 3.985 13 N -0.867 5.867 14 S 2.802 3.198 15 O -0.976 6.976 16 O -0.981 6.981 17 C -0.769 4.769 18 C -0.052 4.052 19 C -0.151 4.151 20 C -0.050 4.050 21 C -0.134 4.134 22 C -0.047 4.047 23 C -0.124 4.124 24 C -0.153 4.153 25 C -0.123 4.123 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.258 0.742 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.150 0.850 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.090 -3.937 15.915 20.979 hybrid contribution 0.225 0.118 -1.336 1.360 sum 13.315 -3.819 14.579 20.110 Atomic orbital electron populations 1.21717 0.97997 0.98640 1.00032 1.18320 0.92734 0.93174 0.90675 1.21677 0.98280 0.97972 1.00110 1.21361 1.31403 1.12125 0.91261 0.92823 1.25501 0.95247 0.95593 1.01141 1.69946 1.37265 1.23605 1.23342 0.85708 0.77999 0.78810 0.80271 1.19417 1.21254 1.20945 1.21348 0.97567 0.95346 0.84243 1.55305 1.78399 1.30600 1.22417 1.01050 0.74201 0.72617 0.71972 1.93520 1.79197 1.64030 1.60900 1.93525 1.77344 1.41199 1.86043 1.30585 1.25895 1.04153 1.16281 1.21069 0.94900 0.96897 0.92314 1.21079 0.93932 0.98239 1.01804 1.21444 0.97862 0.92912 0.92744 1.21091 0.93636 0.98751 0.99961 1.20520 0.94411 0.94849 0.94898 1.21207 0.93112 0.95149 1.02980 1.22345 0.95506 0.97876 0.99623 1.21292 0.89981 0.99484 1.01496 0.95071 0.92102 0.96239 0.95488 0.92262 0.94741 0.93268 0.92222 0.92270 0.74214 0.83130 0.82346 0.84978 0.90320 0.88828 0.90759 0.87906 0.88603 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.08 71.98 0.58 -5.30 16 2 C 0.05 2.42 0.51 -52.93 -0.03 2.40 16 3 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 4 C -0.52 -26.84 8.01 25.60 0.21 -26.63 16 5 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 6 C 0.02 1.28 5.15 84.66 0.44 1.72 16 7 N -0.90 -48.50 9.35 21.45 0.20 -48.30 16 8 Si 0.95 41.96 29.54 68.60 2.03 43.98 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.14 5.51 5.05 86.38 0.44 5.95 16 13 N -1.10 -37.64 5.33 -187.49 -1.00 -38.64 16 14 S 2.71 89.57 5.74 -56.49 -0.32 89.25 16 15 O -0.99 -34.86 17.29 -128.00 -2.21 -37.08 16 16 O -0.99 -38.41 16.74 -128.00 -2.14 -40.55 16 17 C -0.68 -19.77 5.94 22.24 0.13 -19.63 16 18 C -0.03 -0.81 9.52 22.24 0.21 -0.60 16 19 C -0.13 -2.70 10.04 22.30 0.22 -2.47 16 20 C -0.05 -0.99 6.14 -19.60 -0.12 -1.11 16 21 C -0.13 -3.12 6.14 -19.59 -0.12 -3.24 16 22 C -0.03 -0.77 9.52 22.30 0.21 -0.56 16 23 C -0.09 -1.47 6.77 30.52 0.21 -1.27 16 24 C -0.12 -1.38 7.08 31.50 0.22 -1.16 16 25 C -0.09 -1.06 6.77 30.51 0.21 -0.85 16 26 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 27 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 2.95 6.07 -2.38 -0.01 2.94 16 31 H 0.03 1.30 6.60 -2.39 -0.02 1.28 16 32 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 33 H 0.06 2.41 7.75 -2.39 -0.02 2.39 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.42 13.50 6.47 -96.75 -0.63 12.87 16 36 H 0.15 3.32 7.62 -2.91 -0.02 3.30 16 37 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.13 3.75 7.61 -2.91 -0.02 3.73 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -65.31 360.89 0.32 -65.00 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.38 Total: 23.93 kcal Atomic # 6 Polarization: -60.98 SS G_CDS: 3.39 Total: -57.59 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -0.80 Total: -86.94 kcal Atomic # 8 Polarization: -73.27 SS G_CDS: -4.36 Total: -77.63 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 89.57 SS G_CDS: -0.32 Total: 89.25 kcal Total: -65.31 0.32 -65.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315996747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.155 kcal (2) G-P(sol) polarization free energy of solvation -65.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds