Wall clock time and date at job start Tue Mar 31 2020 13:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46861 * 2 1 4 4 N 1.46501 * 109.46987 * 239.99738 * 2 1 3 5 5 S 1.65601 * 120.00137 * 38.60965 * 4 2 1 6 6 O 1.42102 * 104.27568 * 176.26453 * 5 4 2 7 7 O 1.42096 * 104.27577 * 304.12240 * 5 4 2 8 8 C 1.81400 * 104.44824 * 60.19466 * 5 4 2 9 9 C 1.53007 * 109.46756 * 170.63240 * 8 5 4 10 10 C 1.50697 * 115.55248 * 58.84372 * 9 8 5 11 11 H 1.08001 * 119.99640 * 270.64387 * 10 9 8 12 12 C 1.37876 * 120.00124 * 90.64170 * 10 9 8 13 13 N 1.31517 * 119.99929 * 3.73878 * 12 10 9 14 14 Si 1.86797 * 120.00042 * 183.74583 * 12 10 9 15 15 H 1.48496 * 109.47695 * 59.99689 * 14 12 10 16 16 H 1.48504 * 109.47228 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46703 * 299.99473 * 14 12 10 18 18 C 1.53002 * 117.49583 * 273.17030 * 9 8 5 19 19 C 1.53001 * 117.49813 * 204.51363 * 9 8 5 20 20 C 1.50692 * 109.46726 * 119.99894 * 2 1 3 21 21 C 1.38234 * 119.99940 * 108.87132 * 20 2 1 22 22 C 1.38237 * 119.99963 * 180.32352 * 21 20 2 23 23 C 1.38242 * 119.99969 * 359.94069 * 22 21 20 24 24 C 1.38236 * 119.99916 * 0.03498 * 23 22 21 25 25 C 1.38233 * 120.00119 * 359.97438 * 24 23 22 26 26 H 1.08994 * 109.47909 * 300.00228 * 1 2 3 27 27 H 1.09003 * 109.46983 * 60.00189 * 1 2 3 28 28 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46964 * 186.68318 * 3 2 1 30 30 H 1.09001 * 109.46701 * 306.67779 * 3 2 1 31 31 H 1.08994 * 109.47077 * 66.67816 * 3 2 1 32 32 H 0.97000 * 119.99323 * 218.60502 * 4 2 1 33 33 H 1.08998 * 109.47248 * 290.63069 * 8 5 4 34 34 H 1.09000 * 109.47685 * 50.63527 * 8 5 4 35 35 H 0.97004 * 119.99870 * 185.00857 * 13 12 10 36 36 H 1.08998 * 117.50419 * 0.02562 * 18 9 8 37 37 H 1.09005 * 117.49455 * 145.02120 * 18 9 8 38 38 H 1.08992 * 117.49903 * 214.98282 * 19 9 8 39 39 H 1.09004 * 117.50136 * 359.97438 * 19 9 8 40 40 H 1.07998 * 120.00195 * 0.26935 * 21 20 2 41 41 H 1.08001 * 120.00120 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.00004 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.99632 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.99827 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1962 5 16 1.2377 -0.4928 -2.6432 6 8 2.0283 -1.2238 -3.5706 7 8 -0.1057 -0.8672 -2.3707 8 6 1.3475 1.2868 -2.9770 9 6 0.8659 1.5690 -4.4017 10 6 -0.5474 1.1439 -4.7062 11 1 -0.7439 0.1487 -5.0769 12 6 -1.5896 2.0253 -4.5116 13 7 -1.3442 3.2599 -4.1306 14 14 -3.3502 1.4659 -4.7888 15 1 -3.6604 0.3364 -3.8760 16 1 -4.2770 2.5931 -4.5135 17 1 -3.5129 1.0233 -6.1970 18 6 1.8944 1.4619 -5.5293 19 6 1.3854 2.8355 -5.0851 20 6 2.0322 -0.7104 1.2304 21 6 2.6276 -1.9527 1.1167 22 6 3.0823 -2.6073 2.2461 23 6 2.9426 -2.0190 3.4893 24 6 2.3477 -0.7764 3.6030 25 6 1.8928 -0.1219 2.4736 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1233 1.4449 -0.1196 30 1 1.5823 1.9896 -0.8242 31 1 1.7775 1.9207 0.9437 32 1 2.7989 -1.2638 -1.1405 33 1 0.7218 1.8288 -2.2679 34 1 2.3822 1.6131 -2.8720 35 1 -2.0788 3.8587 -3.9235 36 1 2.9140 1.1900 -5.2564 37 1 1.5487 1.0842 -6.4916 38 1 0.7051 3.3609 -5.7552 39 1 2.0700 3.4679 -4.5198 40 1 2.7368 -2.4123 0.1455 41 1 3.5471 -3.5781 2.1573 42 1 3.2982 -2.5302 4.3717 43 1 2.2382 -0.3170 4.5743 44 1 1.4277 0.8487 2.5625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331859992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:32 Heat of formation + Delta-G solvation = -15.135437 kcal Electronic energy + Delta-G solvation = -26485.973081 eV Core-core repulsion = 22917.549286 eV Total energy + Delta-G solvation = -3568.423795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.92281 -37.00447 -36.74902 -36.05445 -35.05686 -32.02100 -31.62581 -30.64788 -29.62633 -28.21417 -27.03552 -25.47694 -23.36865 -22.50216 -21.14115 -20.28448 -19.53399 -18.55345 -17.85863 -16.55358 -16.35807 -15.79507 -15.28469 -15.04805 -14.81076 -14.61723 -14.16284 -13.96826 -13.79070 -13.62324 -13.54817 -13.12289 -12.68186 -12.49539 -12.16847 -12.03296 -11.92979 -11.62760 -11.38291 -11.34183 -11.21022 -11.06063 -10.98294 -10.88757 -10.84860 -10.54790 -10.43320 -10.29443 -10.00817 -9.68923 -9.36853 -9.08679 -9.02081 -8.74949 -8.47111 -8.07612 -6.14140 -4.27060 1.07007 1.25373 1.29899 3.33477 3.35430 3.41271 3.44926 3.68448 4.38473 4.43093 4.56498 4.74169 4.87773 4.98991 5.00258 5.03948 5.15298 5.19745 5.25332 5.29934 5.41121 5.46691 5.68505 5.72856 5.81115 5.87799 5.92302 5.96717 6.08779 6.16434 6.22709 6.32196 6.37377 6.40192 6.40537 6.59509 6.59692 6.68663 6.76279 6.89038 7.02543 7.23074 7.27001 7.52301 7.77993 8.19569 8.79159 9.45593 10.92441 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.004245 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.284314 B = 6595.019368 C = 6989.955176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.218 3.782 3 C -0.183 4.183 4 N -1.127 6.127 5 S 2.610 3.390 6 O -0.974 6.974 7 O -0.946 6.946 8 C -0.559 4.559 9 C 0.037 3.963 10 C -0.519 4.519 11 H 0.066 0.934 12 C 0.085 3.915 13 N -0.873 5.873 14 Si 0.886 3.114 15 H -0.267 1.267 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.209 4.209 19 C -0.129 4.129 20 C -0.068 4.068 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.112 4.112 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.409 0.591 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.706 -4.395 14.305 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.129 3.871 3 C -0.241 4.241 4 N -0.884 5.884 5 S 2.707 3.293 6 O -0.965 6.965 7 O -0.936 6.936 8 C -0.692 4.692 9 C 0.035 3.965 10 C -0.556 4.556 11 H 0.084 0.916 12 C -0.120 4.120 13 N -0.508 5.508 14 Si 0.713 3.287 15 H -0.191 1.191 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.246 4.246 19 C -0.168 4.168 20 C -0.069 4.069 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.131 4.131 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.243 0.757 33 H 0.150 0.850 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.046 -4.810 13.788 16.673 hybrid contribution -0.301 0.236 0.261 0.463 sum 7.746 -4.574 14.049 16.682 Atomic orbital electron populations 1.22613 0.91554 1.04904 1.04013 1.18967 0.94595 0.90985 0.82601 1.22738 1.02399 0.95002 1.03999 1.56261 1.45858 1.61653 1.24626 1.05049 0.74043 0.78513 0.71655 1.93497 1.71014 1.70499 1.61490 1.93568 1.35676 1.81443 1.82868 1.30237 1.07213 1.22720 1.09022 1.18278 0.93164 1.00942 0.84144 1.20495 0.88699 0.99672 1.46742 0.91579 1.24914 0.99215 0.94177 0.93704 1.70010 1.32179 1.04661 1.43968 0.86720 0.83906 0.78757 0.79352 1.19131 1.21119 1.19898 1.23190 0.97603 1.03051 1.00746 1.22484 1.01212 0.89637 1.03457 1.19890 0.97885 0.94924 0.94227 1.21057 0.98594 0.94771 0.98968 1.21144 0.99968 0.99854 0.92599 1.21135 1.00124 0.95870 0.97440 1.21111 0.98845 0.95368 0.98340 1.21002 1.00160 1.00186 0.91706 0.91445 0.89423 0.90393 0.91581 0.90198 0.90971 0.75652 0.85047 0.87992 0.92706 0.91142 0.89653 0.88925 0.91813 0.85693 0.86087 0.86317 0.86090 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 7.01 37.16 0.26 -2.42 16 2 C 0.22 2.99 0.98 -132.97 -0.13 2.86 16 3 C -0.18 -2.25 8.14 37.16 0.30 -1.95 16 4 N -1.13 -17.00 5.01 -0.40 0.00 -17.00 16 5 S 2.61 52.22 4.56 -107.50 -0.49 51.73 16 6 O -0.97 -21.75 18.08 -57.54 -1.04 -22.79 16 7 O -0.95 -21.66 14.13 -57.54 -0.81 -22.47 16 8 C -0.56 -11.29 4.20 37.16 0.16 -11.14 16 9 C 0.04 0.89 1.59 -155.66 -0.25 0.64 16 10 C -0.52 -14.04 7.98 -34.44 -0.27 -14.31 16 11 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 12 C 0.09 2.29 5.42 -17.82 -0.10 2.19 16 13 N -0.87 -23.54 12.20 55.43 0.68 -22.86 16 14 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.21 -4.61 9.94 -26.69 -0.27 -4.87 16 19 C -0.13 -2.94 8.95 -26.69 -0.24 -3.18 16 20 C -0.07 -0.83 4.77 -104.63 -0.50 -1.33 16 21 C -0.12 -1.36 9.11 -39.58 -0.36 -1.72 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 25 C -0.11 -1.20 8.88 -39.58 -0.35 -1.55 16 26 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 27 H 0.09 1.58 5.29 -51.93 -0.27 1.30 16 28 H 0.08 1.28 7.75 -51.93 -0.40 0.88 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.08 4.73 -51.93 -0.25 0.84 16 31 H 0.07 0.74 6.60 -51.93 -0.34 0.39 16 32 H 0.41 5.32 6.58 -34.48 -0.23 5.09 16 33 H 0.13 2.64 5.67 -51.93 -0.29 2.34 16 34 H 0.10 1.74 8.08 -51.92 -0.42 1.32 16 35 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.89 8.14 -51.93 -0.42 1.46 16 38 H 0.09 2.28 7.87 -51.93 -0.41 1.87 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.13 1.41 6.11 -52.49 -0.32 1.09 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.13 1.15 6.87 -52.49 -0.36 0.79 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -31.92 358.40 -10.45 -42.36 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -6.22 Total: 10.88 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: -2.94 Total: -41.48 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.67 Total: -39.86 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.85 Total: -45.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 52.22 SS G_CDS: -0.49 Total: 51.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.92 -10.45 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331859992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.227 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds