Wall clock time and date at job start Tue Mar 31 2020 13:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46861 * 2 1 4 4 N 1.46501 * 109.46987 * 239.99738 * 2 1 3 5 5 S 1.65601 * 120.00137 * 38.60965 * 4 2 1 6 6 O 1.42102 * 104.27568 * 176.26453 * 5 4 2 7 7 O 1.42096 * 104.27577 * 304.12240 * 5 4 2 8 8 C 1.81400 * 104.44824 * 60.19466 * 5 4 2 9 9 C 1.53007 * 109.46756 * 170.63240 * 8 5 4 10 10 C 1.50697 * 115.55248 * 58.84372 * 9 8 5 11 11 H 1.08001 * 119.99640 * 270.64387 * 10 9 8 12 12 C 1.37876 * 120.00124 * 90.64170 * 10 9 8 13 13 N 1.31517 * 119.99929 * 3.73878 * 12 10 9 14 14 Si 1.86797 * 120.00042 * 183.74583 * 12 10 9 15 15 H 1.48496 * 109.47695 * 59.99689 * 14 12 10 16 16 H 1.48504 * 109.47228 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46703 * 299.99473 * 14 12 10 18 18 C 1.53002 * 117.49583 * 273.17030 * 9 8 5 19 19 C 1.53001 * 117.49813 * 204.51363 * 9 8 5 20 20 C 1.50692 * 109.46726 * 119.99894 * 2 1 3 21 21 C 1.38234 * 119.99940 * 108.87132 * 20 2 1 22 22 C 1.38237 * 119.99963 * 180.32352 * 21 20 2 23 23 C 1.38242 * 119.99969 * 359.94069 * 22 21 20 24 24 C 1.38236 * 119.99916 * 0.03498 * 23 22 21 25 25 C 1.38233 * 120.00119 * 359.97438 * 24 23 22 26 26 H 1.08994 * 109.47909 * 300.00228 * 1 2 3 27 27 H 1.09003 * 109.46983 * 60.00189 * 1 2 3 28 28 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46964 * 186.68318 * 3 2 1 30 30 H 1.09001 * 109.46701 * 306.67779 * 3 2 1 31 31 H 1.08994 * 109.47077 * 66.67816 * 3 2 1 32 32 H 0.97000 * 119.99323 * 218.60502 * 4 2 1 33 33 H 1.08998 * 109.47248 * 290.63069 * 8 5 4 34 34 H 1.09000 * 109.47685 * 50.63527 * 8 5 4 35 35 H 0.97004 * 119.99870 * 185.00857 * 13 12 10 36 36 H 1.08998 * 117.50419 * 0.02562 * 18 9 8 37 37 H 1.09005 * 117.49455 * 145.02120 * 18 9 8 38 38 H 1.08992 * 117.49903 * 214.98282 * 19 9 8 39 39 H 1.09004 * 117.50136 * 359.97438 * 19 9 8 40 40 H 1.07998 * 120.00195 * 0.26935 * 21 20 2 41 41 H 1.08001 * 120.00120 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.00004 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.99632 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.99827 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1962 5 16 1.2377 -0.4928 -2.6432 6 8 2.0283 -1.2238 -3.5706 7 8 -0.1057 -0.8672 -2.3707 8 6 1.3475 1.2868 -2.9770 9 6 0.8659 1.5690 -4.4017 10 6 -0.5474 1.1439 -4.7062 11 1 -0.7439 0.1487 -5.0769 12 6 -1.5896 2.0253 -4.5116 13 7 -1.3442 3.2599 -4.1306 14 14 -3.3502 1.4659 -4.7888 15 1 -3.6604 0.3364 -3.8760 16 1 -4.2770 2.5931 -4.5135 17 1 -3.5129 1.0233 -6.1970 18 6 1.8944 1.4619 -5.5293 19 6 1.3854 2.8355 -5.0851 20 6 2.0322 -0.7104 1.2304 21 6 2.6276 -1.9527 1.1167 22 6 3.0823 -2.6073 2.2461 23 6 2.9426 -2.0190 3.4893 24 6 2.3477 -0.7764 3.6030 25 6 1.8928 -0.1219 2.4736 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1233 1.4449 -0.1196 30 1 1.5823 1.9896 -0.8242 31 1 1.7775 1.9207 0.9437 32 1 2.7989 -1.2638 -1.1405 33 1 0.7218 1.8288 -2.2679 34 1 2.3822 1.6131 -2.8720 35 1 -2.0788 3.8587 -3.9235 36 1 2.9140 1.1900 -5.2564 37 1 1.5487 1.0842 -6.4916 38 1 0.7051 3.3609 -5.7552 39 1 2.0700 3.4679 -4.5198 40 1 2.7368 -2.4123 0.1455 41 1 3.5471 -3.5781 2.1573 42 1 3.2982 -2.5302 4.3717 43 1 2.2382 -0.3170 4.5743 44 1 1.4277 0.8487 2.5625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331859992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:31 Heat of formation + Delta-G solvation = -34.735257 kcal Electronic energy + Delta-G solvation = -26486.822993 eV Core-core repulsion = 22917.549286 eV Total energy + Delta-G solvation = -3569.273707 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81196 -38.56960 -38.25196 -37.48105 -36.74306 -34.05545 -32.61274 -31.51125 -30.70462 -29.72383 -28.17366 -27.47151 -24.29510 -23.28994 -22.92782 -21.59186 -21.05012 -20.06043 -19.06805 -18.34228 -17.61745 -17.02585 -16.88344 -16.63764 -16.05387 -15.92923 -15.63810 -15.13361 -14.95631 -14.89114 -14.69357 -14.37805 -13.94905 -13.76077 -13.64617 -13.43481 -13.16781 -13.09528 -12.93965 -12.88049 -12.82130 -12.56087 -12.44875 -12.41833 -12.16262 -12.11238 -11.84488 -11.80916 -11.50493 -11.41918 -11.01773 -10.65017 -10.43255 -9.87531 -9.78449 -9.58069 -8.18942 -6.35240 -0.50523 0.45932 0.53468 1.38276 1.40705 1.49530 2.00609 2.40218 2.89013 2.94124 3.08217 3.38829 3.48513 3.52497 3.87532 3.90772 4.08692 4.16085 4.20116 4.27565 4.31497 4.35811 4.54763 4.59996 4.64629 4.68543 4.70875 4.79707 4.88535 4.90823 5.00645 5.09994 5.13578 5.19618 5.20908 5.33478 5.39578 5.49705 5.61305 5.66131 5.67843 5.69733 5.73284 6.11332 6.15369 6.22569 6.71207 7.38013 8.86993 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.004245 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.284314 B = 6595.019368 C = 6989.955176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.218 3.782 3 C -0.184 4.184 4 N -1.111 6.111 5 S 2.622 3.378 6 O -1.002 7.002 7 O -0.983 6.983 8 C -0.553 4.553 9 C 0.007 3.993 10 C -0.538 4.538 11 H 0.044 0.956 12 C 0.051 3.949 13 N -0.886 5.886 14 Si 0.926 3.074 15 H -0.277 1.277 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.201 4.201 19 C -0.124 4.124 20 C -0.083 4.083 21 C -0.136 4.136 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.419 0.581 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.266 0.734 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.099 -4.010 16.703 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.129 3.871 3 C -0.243 4.243 4 N -0.872 5.872 5 S 2.720 3.280 6 O -0.993 6.993 7 O -0.973 6.973 8 C -0.686 4.686 9 C 0.005 3.995 10 C -0.575 4.575 11 H 0.062 0.938 12 C -0.153 4.153 13 N -0.522 5.522 14 Si 0.751 3.249 15 H -0.202 1.202 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.238 4.238 19 C -0.163 4.163 20 C -0.085 4.085 21 C -0.155 4.155 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.137 4.137 25 C -0.137 4.137 26 H 0.111 0.889 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.257 0.743 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.156 0.844 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.444 -4.428 16.173 19.245 hybrid contribution -0.705 0.063 -0.408 0.817 sum 8.739 -4.365 15.765 18.546 Atomic orbital electron populations 1.22600 0.93315 1.03621 1.03789 1.19065 0.93302 0.92119 0.82570 1.22758 1.03083 0.93670 1.04755 1.55798 1.45898 1.61951 1.23591 1.04384 0.73272 0.78260 0.72113 1.93447 1.71313 1.71293 1.63238 1.93530 1.38005 1.82109 1.83626 1.30123 1.09128 1.22693 1.06614 1.18413 0.92436 1.02187 0.86451 1.20653 0.90992 0.98853 1.47027 0.93778 1.25400 1.01636 0.94432 0.93822 1.70042 1.32860 1.04900 1.44410 0.86105 0.81291 0.78457 0.79032 1.20240 1.19562 1.19598 1.23242 0.98408 1.02305 0.99831 1.22405 1.01092 0.89720 1.03089 1.19785 0.99323 0.95366 0.94000 1.21174 0.99647 0.95091 0.99559 1.21406 0.99731 1.00583 0.92498 1.21508 0.99173 0.95887 0.97964 1.21464 0.97837 0.95343 0.99081 1.21221 1.00180 1.00914 0.91355 0.88902 0.92332 0.92228 0.90230 0.91614 0.88619 0.74281 0.85073 0.84610 0.92481 0.88537 0.90468 0.91324 0.89447 0.86220 0.84373 0.83773 0.83510 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.43 7.01 71.98 0.50 -4.93 16 2 C 0.22 5.75 0.98 2.86 0.00 5.75 16 3 C -0.18 -4.15 8.14 71.98 0.59 -3.56 16 4 N -1.11 -33.02 5.01 -155.19 -0.78 -33.80 16 5 S 2.62 106.07 4.56 -56.49 -0.26 105.81 16 6 O -1.00 -45.11 18.08 -127.65 -2.31 -47.42 16 7 O -0.98 -46.72 14.13 -127.65 -1.80 -48.52 16 8 C -0.55 -22.02 4.20 71.98 0.30 -21.72 16 9 C 0.01 0.35 1.59 -52.93 -0.08 0.26 16 10 C -0.54 -29.79 7.98 25.60 0.20 -29.58 16 11 H 0.04 2.56 7.82 -2.91 -0.02 2.54 16 12 C 0.05 2.76 5.42 84.65 0.46 3.22 16 13 N -0.89 -48.03 12.20 21.45 0.26 -47.76 16 14 Si 0.93 44.11 29.54 68.60 2.03 46.13 16 15 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 18 C -0.20 -8.73 9.94 30.62 0.30 -8.42 16 19 C -0.12 -5.58 8.95 30.62 0.27 -5.30 16 20 C -0.08 -1.90 4.77 -19.87 -0.09 -1.99 16 21 C -0.14 -3.04 9.11 22.27 0.20 -2.83 16 22 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 24 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 25 C -0.12 -2.20 8.88 22.27 0.20 -2.00 16 26 H 0.09 2.29 8.00 -2.39 -0.02 2.27 16 27 H 0.06 2.16 5.29 -2.39 -0.01 2.15 16 28 H 0.06 2.02 7.75 -2.39 -0.02 2.00 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.68 4.73 -2.39 -0.01 1.66 16 31 H 0.10 1.68 6.60 -2.39 -0.02 1.66 16 32 H 0.42 10.67 6.58 -96.74 -0.64 10.04 16 33 H 0.13 5.26 5.67 -2.39 -0.01 5.24 16 34 H 0.14 4.35 8.08 -2.39 -0.02 4.33 16 35 H 0.27 13.72 8.32 -92.71 -0.77 12.95 16 36 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 37 H 0.08 3.43 8.14 -2.38 -0.02 3.41 16 38 H 0.07 3.40 7.87 -2.39 -0.02 3.38 16 39 H 0.09 3.46 8.14 -2.38 -0.02 3.44 16 40 H 0.12 2.66 6.11 -2.91 -0.02 2.64 16 41 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.14 2.10 6.87 -2.91 -0.02 2.08 16 Total: -1.00 -69.63 358.40 1.05 -68.58 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.38 Total: 33.49 kcal Atomic # 6 Polarization: -80.04 SS G_CDS: 3.53 Total: -76.51 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -0.52 Total: -81.57 kcal Atomic # 8 Polarization: -91.83 SS G_CDS: -4.11 Total: -95.94 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 106.07 SS G_CDS: -0.26 Total: 105.81 kcal Total: -69.63 1.05 -68.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331859992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.849 kcal (2) G-P(sol) polarization free energy of solvation -69.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds