Wall clock time and date at job start Tue Mar 31 2020 13:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47022 * 2 1 4 4 C 1.50693 * 109.47355 * 120.00179 * 2 1 3 5 5 C 1.38257 * 119.99781 * 293.76871 * 4 2 1 6 6 C 1.38217 * 120.00033 * 180.02562 * 5 4 2 7 7 C 1.38253 * 119.99943 * 359.97438 * 6 5 4 8 8 C 1.38214 * 120.00123 * 0.02925 * 7 6 5 9 9 C 1.38213 * 120.00326 * 113.78328 * 4 2 1 10 10 S 1.76202 * 119.99724 * 359.97438 * 9 4 2 11 11 O 1.42108 * 106.39937 * 182.95974 * 10 9 4 12 12 O 1.42093 * 106.40107 * 315.87670 * 10 9 4 13 13 N 1.65595 * 107.21948 * 69.41948 * 10 9 4 14 14 C 1.46499 * 120.00270 * 58.65477 * 13 10 9 15 15 C 1.52995 * 109.47426 * 152.82629 * 14 13 10 16 16 C 1.50701 * 115.54480 * 66.23588 * 15 14 13 17 17 H 1.07998 * 120.00069 * 268.67158 * 16 15 14 18 18 C 1.37880 * 120.00275 * 88.67653 * 16 15 14 19 19 N 1.31521 * 119.99549 * 1.64665 * 18 16 15 20 20 Si 1.86792 * 120.00418 * 181.65359 * 18 16 15 21 21 H 1.48498 * 109.47224 * 59.99626 * 20 18 16 22 22 H 1.48503 * 109.47577 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47098 * 299.99824 * 20 18 16 24 24 C 1.52993 * 117.50203 * 280.56895 * 15 14 13 25 25 C 1.52993 * 117.50156 * 211.90429 * 15 14 13 26 26 H 1.08994 * 109.47015 * 305.35884 * 1 2 3 27 27 H 1.09004 * 109.46844 * 65.35560 * 1 2 3 28 28 H 1.08999 * 109.47084 * 185.35360 * 1 2 3 29 29 H 1.08998 * 109.46947 * 240.00262 * 2 1 3 30 30 H 1.08998 * 109.47119 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47021 * 299.99921 * 3 2 1 32 32 H 1.09002 * 109.47072 * 59.99821 * 3 2 1 33 33 H 1.07999 * 120.00137 * 359.97438 * 5 4 2 34 34 H 1.07995 * 120.00091 * 180.02562 * 6 5 4 35 35 H 1.08000 * 120.00178 * 180.30164 * 7 6 5 36 36 H 1.07999 * 120.00235 * 179.97438 * 8 7 6 37 37 H 0.97002 * 120.00243 * 238.66142 * 13 10 9 38 38 H 1.09000 * 109.47349 * 272.83423 * 14 13 10 39 39 H 1.09011 * 109.47013 * 32.82750 * 14 13 10 40 40 H 0.97003 * 119.99800 * 185.00881 * 19 18 16 41 41 H 1.09002 * 117.49927 * 359.97438 * 24 15 14 42 42 H 1.08999 * 117.50096 * 145.01936 * 24 15 14 43 43 H 1.09008 * 117.50133 * 214.98203 * 25 15 14 44 44 H 1.09003 * 117.50035 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 1.8079 -0.1677 2.4820 6 6 2.2691 -0.8190 3.6105 7 6 2.9545 -2.0134 3.4877 8 6 3.1791 -2.5559 2.2365 9 6 2.7179 -1.9043 1.1076 10 16 3.0038 -2.5960 -0.4875 11 8 3.6603 -3.8382 -0.2744 12 8 1.7815 -2.4755 -1.2020 13 7 4.0945 -1.6168 -1.2582 14 6 5.4140 -1.3822 -0.6666 15 6 6.4203 -1.0641 -1.7743 16 6 6.1879 0.2295 -2.5116 17 1 5.5833 0.2399 -3.4065 18 6 6.7471 1.3998 -2.0439 19 7 7.5099 1.3818 -0.9726 20 14 6.4211 3.0107 -2.9314 21 1 4.9621 3.2871 -2.9359 22 1 7.1310 4.1128 -2.2337 23 1 6.9107 2.9132 -4.3300 24 6 6.9879 -2.2398 -2.5720 25 6 7.8698 -1.5044 -1.5598 26 1 -0.3633 0.5947 0.8381 27 1 -0.3633 0.4285 -0.9341 28 1 -0.3633 -1.0232 0.0959 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.2728 0.7655 2.5779 34 1 2.0934 -0.3953 4.5882 35 1 3.3107 -2.5248 4.3698 36 1 3.7149 -3.4886 2.1405 37 1 3.8597 -1.1985 -2.1012 38 1 5.3578 -0.5420 0.0255 39 1 5.7352 -2.2746 -0.1292 40 1 7.8439 2.2133 -0.6011 41 1 6.6448 -3.2399 -2.3075 42 1 7.1937 -2.0775 -3.6301 43 1 8.6553 -0.8585 -1.9523 44 1 8.1066 -2.0203 -0.6292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332108701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:24 Heat of formation + Delta-G solvation = -34.581165 kcal Electronic energy + Delta-G solvation = -26643.018884 eV Core-core repulsion = 23073.751859 eV Total energy + Delta-G solvation = -3569.267026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.61153 -37.16436 -36.92820 -35.52596 -35.19229 -33.30190 -31.93264 -31.26423 -29.78461 -26.98466 -26.01047 -24.93009 -23.53862 -23.16834 -21.05153 -20.14715 -19.48599 -19.01354 -17.59630 -16.94177 -16.36445 -16.11808 -15.57612 -14.86671 -14.73601 -14.45943 -14.24861 -14.00272 -13.82385 -13.62185 -13.50625 -12.82615 -12.48957 -12.43260 -12.29948 -12.08365 -12.01593 -11.86466 -11.74822 -11.73187 -11.37883 -11.04782 -11.00869 -10.95935 -10.94238 -10.69950 -10.51934 -10.21795 -10.16065 -9.56747 -9.33789 -9.06559 -8.78208 -8.73424 -8.37689 -8.15121 -6.09516 -4.17908 0.71116 0.96776 1.32559 3.24865 3.30684 3.33055 3.34366 3.59994 4.07649 4.33947 4.53872 4.60573 4.84066 4.95535 5.11021 5.18876 5.24816 5.30122 5.33284 5.44340 5.49491 5.74604 5.75268 5.82169 5.88781 5.95969 6.00877 6.10867 6.18361 6.25674 6.26536 6.36181 6.38790 6.41065 6.46391 6.50143 6.59282 6.80952 6.86869 6.98533 7.14274 7.40607 7.60216 7.70836 7.80021 8.35897 8.84153 9.48963 10.98035 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.005616 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.792207 B = 4984.313704 C = 5739.289284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.036 3.964 5 C -0.140 4.140 6 C -0.066 4.066 7 C -0.149 4.149 8 C -0.020 4.020 9 C -0.671 4.671 10 S 2.690 3.310 11 O -0.969 6.969 12 O -0.968 6.968 13 N -1.096 6.096 14 C 0.164 3.836 15 C 0.031 3.969 16 C -0.495 4.495 17 H 0.060 0.940 18 C 0.074 3.926 19 N -0.876 5.876 20 Si 0.886 3.114 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.211 4.211 25 C -0.143 4.143 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.422 0.578 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.261 0.739 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.481 -2.488 7.827 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.204 4.204 4 C 0.035 3.965 5 C -0.158 4.158 6 C -0.084 4.084 7 C -0.168 4.168 8 C -0.039 4.039 9 C -0.757 4.757 10 S 2.779 3.221 11 O -0.959 6.959 12 O -0.958 6.958 13 N -0.859 5.859 14 C 0.038 3.962 15 C 0.029 3.971 16 C -0.532 4.532 17 H 0.078 0.922 18 C -0.130 4.130 19 N -0.513 5.513 20 Si 0.714 3.286 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.248 4.248 25 C -0.182 4.182 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.159 0.841 37 H 0.258 0.742 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.652 -3.201 7.777 13.571 hybrid contribution 0.000 1.695 0.026 1.695 sum -10.652 -1.507 7.802 13.289 Atomic orbital electron populations 1.21730 0.93260 1.02323 1.01807 1.20646 0.97333 0.97264 0.95304 1.21897 1.02716 0.93897 1.01882 1.19576 0.90340 0.90812 0.95769 1.21085 1.02113 1.00693 0.91957 1.21392 0.94184 0.94244 0.98588 1.21215 1.01137 0.96947 0.97507 1.20966 0.93336 0.98122 0.91466 1.30864 1.13890 1.08393 1.22570 1.01896 0.73046 0.73663 0.73491 1.93541 1.75575 1.40643 1.86100 1.93554 1.44317 1.86527 1.71380 1.55152 1.26646 1.68916 1.35185 1.20904 0.80782 0.98471 0.96008 1.18931 0.90770 0.92665 0.94752 1.20340 1.31785 0.90537 1.10563 0.92200 1.24959 0.93993 0.98784 0.95218 1.69993 1.32608 1.26954 1.21724 0.86762 0.78519 0.83341 0.80010 1.20087 1.21377 1.20241 1.23045 1.08481 0.96154 0.97129 1.22492 0.96058 1.01866 0.97741 0.92886 0.91804 0.92021 0.88914 0.91075 0.91753 0.92707 0.85358 0.85586 0.85342 0.84117 0.74166 0.91728 0.93285 0.92940 0.91402 0.90438 0.89473 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.01 37.16 0.33 -1.34 16 2 C -0.09 -1.26 2.49 -91.77 -0.23 -1.49 16 3 C -0.15 -2.02 8.93 37.16 0.33 -1.69 16 4 C 0.04 0.54 4.78 -104.63 -0.50 0.04 16 5 C -0.14 -1.76 8.86 -39.58 -0.35 -2.11 16 6 C -0.07 -0.75 10.05 -39.58 -0.40 -1.15 16 7 C -0.15 -1.80 10.05 -39.58 -0.40 -2.19 16 8 C -0.02 -0.28 9.55 -39.58 -0.38 -0.66 16 9 C -0.67 -10.63 5.76 -39.58 -0.23 -10.86 16 10 S 2.69 46.95 4.94 -107.50 -0.53 46.42 16 11 O -0.97 -18.88 16.58 -57.17 -0.95 -19.83 16 12 O -0.97 -17.75 15.58 -57.17 -0.89 -18.64 16 13 N -1.10 -20.08 5.38 -10.61 -0.06 -20.14 16 14 C 0.16 3.38 6.01 -4.04 -0.02 3.35 16 15 C 0.03 0.71 1.62 -155.67 -0.25 0.46 16 16 C -0.49 -12.35 8.47 -34.44 -0.29 -12.65 16 17 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 18 C 0.07 1.89 5.41 -17.82 -0.10 1.79 16 19 N -0.88 -23.19 12.48 55.43 0.69 -22.50 16 20 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 C -0.21 -4.51 9.96 -26.70 -0.27 -4.77 16 25 C -0.14 -3.25 9.01 -26.70 -0.24 -3.49 16 26 H 0.05 0.55 8.00 -51.93 -0.42 0.14 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.47 4.37 -51.85 -0.23 1.24 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.64 7.07 -51.93 -0.37 0.27 16 33 H 0.13 1.33 7.19 -52.49 -0.38 0.96 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.14 1.90 7.34 -52.49 -0.39 1.51 16 37 H 0.42 7.53 8.43 -34.47 -0.29 7.24 16 38 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.05 0.96 7.70 -51.92 -0.40 0.57 16 40 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.09 2.13 8.06 -51.92 -0.42 1.71 16 44 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -29.51 371.31 -10.80 -40.31 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.65 Total: 10.62 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: -2.98 Total: -36.75 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.63 Total: -42.64 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -1.84 Total: -38.47 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 46.95 SS G_CDS: -0.53 Total: 46.42 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.51 -10.80 -40.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332108701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.730 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds