Wall clock time and date at job start Tue Mar 31 2020 13:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47022 * 2 1 4 4 C 1.50693 * 109.47355 * 120.00179 * 2 1 3 5 5 C 1.38257 * 119.99781 * 293.76871 * 4 2 1 6 6 C 1.38217 * 120.00033 * 180.02562 * 5 4 2 7 7 C 1.38253 * 119.99943 * 359.97438 * 6 5 4 8 8 C 1.38214 * 120.00123 * 0.02925 * 7 6 5 9 9 C 1.38213 * 120.00326 * 113.78328 * 4 2 1 10 10 S 1.76202 * 119.99724 * 359.97438 * 9 4 2 11 11 O 1.42108 * 106.39937 * 182.95974 * 10 9 4 12 12 O 1.42093 * 106.40107 * 315.87670 * 10 9 4 13 13 N 1.65595 * 107.21948 * 69.41948 * 10 9 4 14 14 C 1.46499 * 120.00270 * 58.65477 * 13 10 9 15 15 C 1.52995 * 109.47426 * 152.82629 * 14 13 10 16 16 C 1.50701 * 115.54480 * 66.23588 * 15 14 13 17 17 H 1.07998 * 120.00069 * 268.67158 * 16 15 14 18 18 C 1.37880 * 120.00275 * 88.67653 * 16 15 14 19 19 N 1.31521 * 119.99549 * 1.64665 * 18 16 15 20 20 Si 1.86792 * 120.00418 * 181.65359 * 18 16 15 21 21 H 1.48498 * 109.47224 * 59.99626 * 20 18 16 22 22 H 1.48503 * 109.47577 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47098 * 299.99824 * 20 18 16 24 24 C 1.52993 * 117.50203 * 280.56895 * 15 14 13 25 25 C 1.52993 * 117.50156 * 211.90429 * 15 14 13 26 26 H 1.08994 * 109.47015 * 305.35884 * 1 2 3 27 27 H 1.09004 * 109.46844 * 65.35560 * 1 2 3 28 28 H 1.08999 * 109.47084 * 185.35360 * 1 2 3 29 29 H 1.08998 * 109.46947 * 240.00262 * 2 1 3 30 30 H 1.08998 * 109.47119 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47021 * 299.99921 * 3 2 1 32 32 H 1.09002 * 109.47072 * 59.99821 * 3 2 1 33 33 H 1.07999 * 120.00137 * 359.97438 * 5 4 2 34 34 H 1.07995 * 120.00091 * 180.02562 * 6 5 4 35 35 H 1.08000 * 120.00178 * 180.30164 * 7 6 5 36 36 H 1.07999 * 120.00235 * 179.97438 * 8 7 6 37 37 H 0.97002 * 120.00243 * 238.66142 * 13 10 9 38 38 H 1.09000 * 109.47349 * 272.83423 * 14 13 10 39 39 H 1.09011 * 109.47013 * 32.82750 * 14 13 10 40 40 H 0.97003 * 119.99800 * 185.00881 * 19 18 16 41 41 H 1.09002 * 117.49927 * 359.97438 * 24 15 14 42 42 H 1.08999 * 117.50096 * 145.01936 * 24 15 14 43 43 H 1.09008 * 117.50133 * 214.98203 * 25 15 14 44 44 H 1.09003 * 117.50035 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 1.8079 -0.1677 2.4820 6 6 2.2691 -0.8190 3.6105 7 6 2.9545 -2.0134 3.4877 8 6 3.1791 -2.5559 2.2365 9 6 2.7179 -1.9043 1.1076 10 16 3.0038 -2.5960 -0.4875 11 8 3.6603 -3.8382 -0.2744 12 8 1.7815 -2.4755 -1.2020 13 7 4.0945 -1.6168 -1.2582 14 6 5.4140 -1.3822 -0.6666 15 6 6.4203 -1.0641 -1.7743 16 6 6.1879 0.2295 -2.5116 17 1 5.5833 0.2399 -3.4065 18 6 6.7471 1.3998 -2.0439 19 7 7.5099 1.3818 -0.9726 20 14 6.4211 3.0107 -2.9314 21 1 4.9621 3.2871 -2.9359 22 1 7.1310 4.1128 -2.2337 23 1 6.9107 2.9132 -4.3300 24 6 6.9879 -2.2398 -2.5720 25 6 7.8698 -1.5044 -1.5598 26 1 -0.3633 0.5947 0.8381 27 1 -0.3633 0.4285 -0.9341 28 1 -0.3633 -1.0232 0.0959 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.2728 0.7655 2.5779 34 1 2.0934 -0.3953 4.5882 35 1 3.3107 -2.5248 4.3698 36 1 3.7149 -3.4886 2.1405 37 1 3.8597 -1.1985 -2.1012 38 1 5.3578 -0.5420 0.0255 39 1 5.7352 -2.2746 -0.1292 40 1 7.8439 2.2133 -0.6011 41 1 6.6448 -3.2399 -2.3075 42 1 7.1937 -2.0775 -3.6301 43 1 8.6553 -0.8585 -1.9523 44 1 8.1066 -2.0203 -0.6292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332108701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:23 Heat of formation + Delta-G solvation = -51.380881 kcal Electronic energy + Delta-G solvation = -26643.747375 eV Core-core repulsion = 23073.751859 eV Total energy + Delta-G solvation = -3569.995516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.62569 -38.82357 -38.42538 -36.97826 -36.27230 -34.89310 -33.86315 -32.28254 -30.78375 -28.00569 -27.85269 -26.68070 -24.55191 -24.22753 -22.84827 -21.27339 -21.17465 -20.40216 -18.85046 -18.46488 -17.91871 -17.43587 -16.81447 -16.60220 -16.14368 -15.84590 -15.44732 -15.42498 -15.01051 -14.71955 -14.65943 -14.56521 -13.98885 -13.76254 -13.49250 -13.42777 -13.23977 -13.14232 -13.04984 -12.98837 -12.94286 -12.84075 -12.77487 -12.33607 -12.08959 -12.08185 -11.97162 -11.73257 -11.40474 -11.29343 -10.90598 -10.49407 -10.35566 -10.13254 -9.95846 -9.78220 -8.05099 -6.17430 -0.59491 -0.13804 0.33172 1.45130 1.47287 1.52732 2.00928 2.46056 2.49444 2.76763 3.22183 3.36417 3.53110 3.55934 3.78268 3.99366 4.14797 4.18543 4.24029 4.35012 4.38364 4.45746 4.54278 4.62964 4.69233 4.76263 4.79067 4.83666 4.86334 4.94657 5.02552 5.05536 5.12522 5.16108 5.26245 5.29474 5.33073 5.40181 5.41055 5.45583 5.65041 5.76558 5.81090 5.91639 6.19993 6.44153 6.88403 7.51223 9.01879 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.005616 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.792207 B = 4984.313704 C = 5739.289284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 C -0.143 4.143 4 C 0.020 3.980 5 C -0.144 4.144 6 C -0.057 4.057 7 C -0.148 4.148 8 C -0.040 4.040 9 C -0.688 4.688 10 S 2.700 3.300 11 O -0.994 6.994 12 O -0.981 6.981 13 N -1.097 6.097 14 C 0.178 3.822 15 C 0.011 3.989 16 C -0.503 4.503 17 H 0.056 0.944 18 C 0.034 3.966 19 N -0.901 5.901 20 Si 0.939 3.061 21 H -0.268 1.268 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.195 4.195 25 C -0.148 4.148 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.141 0.859 37 H 0.421 0.579 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.259 0.741 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 -1.669 9.550 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.112 4.112 3 C -0.200 4.200 4 C 0.018 3.982 5 C -0.163 4.163 6 C -0.075 4.075 7 C -0.167 4.167 8 C -0.059 4.059 9 C -0.778 4.778 10 S 2.794 3.206 11 O -0.984 6.984 12 O -0.971 6.971 13 N -0.858 5.858 14 C 0.052 3.948 15 C 0.009 3.991 16 C -0.541 4.541 17 H 0.074 0.926 18 C -0.167 4.167 19 N -0.539 5.539 20 Si 0.765 3.235 21 H -0.192 1.192 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.232 4.232 25 C -0.187 4.187 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.171 0.829 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.158 0.842 37 H 0.258 0.742 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.999 -2.406 9.447 15.460 hybrid contribution 0.393 1.426 -0.444 1.544 sum -11.607 -0.980 9.004 14.722 Atomic orbital electron populations 1.21734 0.91760 1.02172 1.03244 1.20683 0.98655 0.97280 0.94605 1.21864 1.00804 0.93946 1.03370 1.19748 0.90777 0.90693 0.96947 1.21444 1.01961 1.01574 0.91299 1.21900 0.92192 0.93423 0.99977 1.21629 1.00341 0.97233 0.97450 1.21176 0.93981 0.98514 0.92246 1.30463 1.16247 1.09755 1.21311 1.01286 0.72348 0.73011 0.73963 1.93497 1.76034 1.42221 1.86685 1.93531 1.44434 1.86688 1.72456 1.55065 1.26293 1.68847 1.35577 1.20579 0.81177 0.98077 0.94955 1.19083 0.91427 0.92763 0.95803 1.20576 1.31359 0.91623 1.10538 0.92566 1.25533 0.93989 1.01327 0.95834 1.70091 1.33543 1.27343 1.22886 0.85917 0.78643 0.80154 0.78737 1.19249 1.21481 1.20384 1.23029 1.07020 0.96332 0.96836 1.22406 0.95463 1.02123 0.98659 0.90430 0.91210 0.93152 0.91070 0.93905 0.91255 0.90258 0.82850 0.81624 0.82217 0.84156 0.74225 0.93305 0.92590 0.93178 0.89929 0.90393 0.91687 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.01 71.98 0.65 -2.44 16 2 C -0.09 -2.64 2.49 -11.54 -0.03 -2.67 16 3 C -0.14 -3.78 8.93 71.98 0.64 -3.14 16 4 C 0.02 0.56 4.78 -19.87 -0.09 0.47 16 5 C -0.14 -3.20 8.86 22.27 0.20 -3.00 16 6 C -0.06 -1.07 10.05 22.27 0.22 -0.85 16 7 C -0.15 -3.12 10.05 22.27 0.22 -2.90 16 8 C -0.04 -1.10 9.55 22.27 0.21 -0.89 16 9 C -0.69 -21.58 5.76 22.27 0.13 -21.45 16 10 S 2.70 96.09 4.94 -56.49 -0.28 95.81 16 11 O -0.99 -39.42 16.58 -128.00 -2.12 -41.54 16 12 O -0.98 -36.78 15.58 -128.00 -1.99 -38.77 16 13 N -1.10 -41.10 5.38 -187.49 -1.01 -42.11 16 14 C 0.18 7.46 6.01 86.38 0.52 7.98 16 15 C 0.01 0.52 1.62 -52.93 -0.09 0.44 16 16 C -0.50 -25.42 8.47 25.60 0.22 -25.20 16 17 H 0.06 2.81 7.81 -2.91 -0.02 2.79 16 18 C 0.03 1.75 5.41 84.65 0.46 2.21 16 19 N -0.90 -48.24 12.48 21.45 0.27 -47.98 16 20 Si 0.94 41.03 29.54 68.60 2.03 43.05 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 C -0.19 -8.31 9.96 30.62 0.30 -8.00 16 25 C -0.15 -6.77 9.01 30.62 0.28 -6.50 16 26 H 0.08 1.40 8.00 -2.39 -0.02 1.38 16 27 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 2.30 4.37 -2.44 -0.01 2.28 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.65 7.07 -2.39 -0.02 1.64 16 33 H 0.15 2.54 7.19 -2.91 -0.02 2.52 16 34 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.14 3.75 7.34 -2.91 -0.02 3.73 16 37 H 0.42 15.57 8.43 -96.74 -0.82 14.75 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 2.23 7.70 -2.38 -0.02 2.21 16 40 H 0.26 13.42 8.32 -92.71 -0.77 12.65 16 41 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 42 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.06 3.24 8.06 -2.38 -0.02 3.22 16 44 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -63.43 371.31 0.92 -62.51 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.18 Total: 34.97 kcal Atomic # 6 Polarization: -69.78 SS G_CDS: 3.84 Total: -65.94 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -0.74 Total: -90.09 kcal Atomic # 8 Polarization: -76.20 SS G_CDS: -4.12 Total: -80.31 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: 96.09 SS G_CDS: -0.28 Total: 95.81 kcal Total: -63.43 0.92 -62.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332108701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.129 kcal (2) G-P(sol) polarization free energy of solvation -63.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds